Wall clock time and date at job start Thu Mar 26 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47251 * 239.99993 * 2 1 3 5 5 C 1.52998 * 109.47279 * 120.00289 * 2 1 3 6 6 O 1.42898 * 109.47233 * 71.21034 * 5 2 1 7 7 Si 1.86304 * 109.47425 * 191.21448 * 5 2 1 8 8 H 1.48498 * 109.47035 * 299.99864 * 7 5 2 9 9 H 1.48496 * 109.47043 * 59.99961 * 7 5 2 10 10 H 1.48496 * 109.46928 * 179.97438 * 7 5 2 11 11 C 1.50702 * 109.46857 * 311.21606 * 5 2 1 12 12 O 1.21289 * 120.00425 * 114.87122 * 11 5 2 13 13 N 1.34779 * 119.99921 * 294.86581 * 11 5 2 14 14 C 1.40084 * 120.00362 * 176.13105 * 13 11 5 15 15 C 1.38873 * 119.99519 * 23.60367 * 14 13 11 16 16 C 1.38036 * 120.00084 * 179.76540 * 15 14 13 17 17 C 1.38889 * 119.99970 * 0.53747 * 16 15 14 18 18 N 1.39994 * 120.00554 * 179.69778 * 17 16 15 19 19 C 1.34767 * 119.99898 * 32.52697 * 18 17 16 20 20 O 1.21720 * 120.00226 * 6.50172 * 19 18 17 21 21 C 1.46541 * 120.00197 * 186.49868 * 19 18 17 22 22 S 1.75838 * 125.45871 * 359.69849 * 21 19 18 23 23 C 1.70615 * 91.56245 * 179.97438 * 22 21 19 24 24 C 1.33846 * 110.95740 * 0.32505 * 23 22 21 25 25 C 1.36697 * 125.46475 * 179.97438 * 21 19 18 26 26 C 1.38895 * 119.99276 * 359.72467 * 17 16 15 27 27 C 1.38042 * 119.99682 * 359.97438 * 26 17 16 28 28 H 1.08993 * 109.46835 * 300.00175 * 1 2 3 29 29 H 1.09004 * 109.46740 * 59.99646 * 1 2 3 30 30 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47063 * 177.60106 * 3 2 1 32 32 H 1.08996 * 109.47009 * 297.60285 * 3 2 1 33 33 H 1.09001 * 109.46912 * 57.60628 * 3 2 1 34 34 H 1.09001 * 109.47538 * 300.00042 * 4 2 1 35 35 H 1.09004 * 109.46954 * 60.00492 * 4 2 1 36 36 H 1.09000 * 109.47404 * 180.02562 * 4 2 1 37 37 H 0.97005 * 120.00071 * 356.13893 * 13 11 5 38 38 H 1.07998 * 119.99502 * 0.02562 * 15 14 13 39 39 H 1.08001 * 120.00225 * 180.25828 * 16 15 14 40 40 H 0.96995 * 119.99779 * 212.53197 * 18 17 16 41 41 H 1.07998 * 124.52304 * 180.02562 * 23 22 21 42 42 H 1.08004 * 122.44907 * 179.72525 * 24 23 22 43 43 H 1.08003 * 123.35215 * 359.97438 * 25 21 19 44 44 H 1.08004 * 119.99796 * 179.97438 * 26 17 16 45 45 H 1.08001 * 119.99212 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 8 1.7897 -2.1227 1.1256 7 14 3.8715 -0.4311 1.4297 8 1 4.5762 -0.9561 0.2327 9 1 4.1315 1.0253 1.5582 10 1 4.3662 -1.1307 2.6425 11 6 1.3248 -0.1886 2.4640 12 8 0.5915 -0.9135 3.1025 13 7 1.5002 1.0935 2.8410 14 6 0.7740 1.6116 3.9210 15 6 0.2689 0.7568 4.8920 16 6 -0.4425 1.2677 5.9589 17 6 -0.6628 2.6356 6.0554 18 7 -1.3897 3.1533 7.1340 19 6 -1.3231 2.5558 8.3402 20 8 -0.5426 1.6400 8.5235 21 6 -2.1905 3.0086 9.4311 22 16 -3.3601 4.3176 9.3281 23 6 -3.8229 4.0945 10.9551 24 6 -3.1253 3.1013 11.5194 25 6 -2.2163 2.4847 10.6935 26 6 -0.1622 3.4900 5.0814 27 6 0.5545 2.9794 4.0178 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1292 1.4428 0.0430 32 1 1.7122 1.9438 -0.9107 33 1 1.6421 1.9686 0.8678 34 1 1.6767 -1.7489 -1.2493 35 1 1.6768 -0.2073 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 2.1292 1.6575 2.3643 38 1 0.4364 -0.3073 4.8145 39 1 -0.8317 0.6034 6.7162 40 1 -1.9413 3.9419 7.0132 41 1 -4.5747 4.6801 11.4634 42 1 -3.2669 2.8056 12.5485 43 1 -1.5843 1.6683 11.0105 44 1 -0.3338 4.5537 5.1561 45 1 0.9441 3.6438 3.2607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733927332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 03:43:36 Heat of formation + Delta-G solvation = -48.612250 kcal Electronic energy + Delta-G solvation = -29682.812544 eV Core-core repulsion = 25565.114090 eV Total energy + Delta-G solvation = -4117.698454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.57286 -39.62308 -38.22459 -37.44125 -35.87862 -34.92026 -33.21735 -30.60290 -30.43150 -29.79783 -28.31392 -26.47720 -26.27331 -25.37966 -24.08939 -22.92198 -22.33841 -20.92553 -19.85252 -19.53059 -18.88394 -17.99299 -17.39161 -16.71805 -16.15801 -15.91625 -15.56126 -15.26716 -14.71408 -14.21863 -14.05923 -13.82804 -13.73515 -13.36085 -13.30009 -13.15556 -13.00400 -12.89147 -12.87744 -12.65927 -12.43794 -12.39304 -11.96176 -11.59869 -11.42865 -11.16452 -10.94257 -10.81300 -10.60046 -10.49375 -10.21408 -10.13738 -9.99168 -9.71225 -9.47212 -9.30588 -9.20643 -9.08123 -9.00891 -8.62076 -8.30116 -7.17315 -5.86364 -5.36898 0.10114 1.04944 1.44913 1.59976 1.76202 2.09421 2.88521 2.98051 3.23767 3.36251 3.39817 3.82927 4.03670 4.25280 4.46689 4.58758 4.60494 4.90025 5.08580 5.15555 5.24825 5.54276 5.70542 5.73038 5.74571 5.84596 5.87421 5.88114 5.93632 5.98344 6.13587 6.28804 6.34546 6.43376 6.50909 6.56712 6.62623 6.66753 6.72249 6.87394 6.89785 6.97231 7.07687 7.13331 7.28590 7.35550 7.44754 7.57766 7.64482 7.95337 8.36525 9.33018 10.01160 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.025135 B = 0.002131 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.697666 B =13138.667179 C =13432.026156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.081 4.081 3 C -0.165 4.165 4 C -0.120 4.120 5 C 0.022 3.978 6 O -0.808 6.808 7 Si 0.900 3.100 8 H -0.268 1.268 9 H -0.297 1.297 10 H -0.284 1.284 11 C 0.485 3.515 12 O -0.513 6.513 13 N -0.689 5.689 14 C 0.160 3.840 15 C -0.129 4.129 16 C -0.093 4.093 17 C 0.096 3.904 18 N -0.663 5.663 19 C 0.586 3.414 20 O -0.506 6.506 21 C -0.264 4.264 22 S 0.199 5.801 23 C -0.229 4.229 24 C -0.149 4.149 25 C -0.054 4.054 26 C -0.119 4.119 27 C -0.152 4.152 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.404 0.596 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.403 0.597 41 H 0.170 0.830 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.122 0.878 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 18.697 13.345 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.082 4.082 3 C -0.222 4.222 4 C -0.177 4.177 5 C -0.082 4.082 6 O -0.750 6.750 7 Si 0.729 3.271 8 H -0.193 1.193 9 H -0.227 1.227 10 H -0.210 1.210 11 C 0.277 3.723 12 O -0.386 6.386 13 N -0.340 5.340 14 C 0.062 3.938 15 C -0.150 4.150 16 C -0.113 4.113 17 C 0.003 3.997 18 N -0.308 5.308 19 C 0.372 3.628 20 O -0.382 6.382 21 C -0.385 4.385 22 S 0.465 5.535 23 C -0.367 4.367 24 C -0.180 4.180 25 C -0.087 4.087 26 C -0.140 4.140 27 C -0.174 4.174 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.149 0.851 40 H 0.238 0.762 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.174 0.826 44 H 0.140 0.860 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.196 18.205 12.749 24.052 hybrid contribution 0.143 0.068 1.139 1.150 sum -9.052 18.272 13.888 24.672 Atomic orbital electron populations 1.21623 0.95305 1.01886 0.98661 1.21074 0.95777 0.92632 0.98761 1.22338 1.00706 0.98168 1.00977 1.21593 0.99643 1.01709 0.94722 1.23566 0.98757 0.99174 0.86743 1.95051 1.86336 1.04063 1.89591 0.87179 0.86206 0.74627 0.79047 1.19271 1.22730 1.21049 1.24791 0.80868 0.78278 0.88318 1.90330 1.37072 1.56882 1.54335 1.45214 1.42755 1.15065 1.30929 1.18289 0.94658 0.92277 0.88562 1.21889 0.98665 1.02879 0.91528 1.21047 0.99347 0.92962 0.97976 1.17539 0.99954 0.92786 0.89422 1.43207 1.47674 1.31489 1.08413 1.16986 0.82040 0.82673 0.81057 1.90891 1.36887 1.28691 1.81728 1.24617 1.07603 1.06609 0.99626 1.82994 1.31528 1.30507 1.08443 1.25345 1.06753 1.04561 1.00004 1.20081 0.98075 0.97781 1.02079 1.20867 0.97609 0.99500 0.90709 1.20453 0.99861 0.98302 0.95350 1.20580 1.03198 0.93705 0.99900 0.94259 0.94937 0.91882 0.92839 0.93096 0.92804 0.91091 0.95024 0.94074 0.75661 0.81933 0.85116 0.76217 0.81277 0.83532 0.82641 0.86026 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 7.98 37.16 0.30 -2.33 16 2 C -0.08 -1.86 0.40 -154.51 -0.06 -1.92 16 3 C -0.16 -3.01 7.18 37.16 0.27 -2.74 16 4 C -0.12 -2.63 7.93 37.16 0.29 -2.33 16 5 C 0.02 0.61 0.33 -27.88 -0.01 0.60 16 6 O -0.81 -27.48 15.88 -55.09 -0.87 -28.36 16 7 Si 0.90 22.10 22.18 -169.99 -3.77 18.33 16 8 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 9 H -0.30 -6.09 6.18 56.52 0.35 -5.74 16 10 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 11 C 0.49 12.72 4.17 -10.98 -0.05 12.68 16 12 O -0.51 -15.15 13.34 -14.31 -0.19 -15.34 16 13 N -0.69 -14.64 4.14 -9.82 -0.04 -14.68 16 14 C 0.16 3.13 6.48 -83.62 -0.54 2.59 16 15 C -0.13 -2.70 8.82 -39.42 -0.35 -3.05 16 16 C -0.09 -1.71 8.65 -39.41 -0.34 -2.05 16 17 C 0.10 1.48 6.29 -83.65 -0.53 0.95 16 18 N -0.66 -8.20 5.33 -11.04 -0.06 -8.26 16 19 C 0.59 8.02 7.50 -12.92 -0.10 7.92 16 20 O -0.51 -8.87 14.52 5.17 0.08 -8.80 16 21 C -0.26 -2.77 6.45 -36.79 -0.24 -3.01 16 22 S 0.20 1.37 22.17 -107.50 -2.38 -1.01 16 23 C -0.23 -1.41 10.92 29.19 0.32 -1.09 16 24 C -0.15 -1.06 10.15 -41.42 -0.42 -1.48 16 25 C -0.05 -0.51 10.01 -40.43 -0.40 -0.91 16 26 C -0.12 -1.63 9.95 -39.41 -0.39 -2.03 16 27 C -0.15 -2.35 9.93 -39.42 -0.39 -2.74 16 28 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.58 8.02 -51.93 -0.42 1.17 16 31 H 0.05 0.95 5.02 -51.93 -0.26 0.69 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.91 5.16 -51.93 -0.27 0.65 16 34 H 0.07 1.74 7.43 -51.93 -0.39 1.36 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.88 6.21 -51.93 -0.32 0.56 16 37 H 0.40 7.56 4.98 -40.82 -0.20 7.36 16 38 H 0.16 3.93 5.38 -52.49 -0.28 3.65 16 39 H 0.13 2.46 6.39 -52.49 -0.34 2.13 16 40 H 0.40 3.58 7.95 -40.82 -0.32 3.26 16 41 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -37.21 368.70 -9.75 -46.95 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.42 Total: 6.53 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.64 Total: -0.93 kcal Atomic # 7 Polarization: -22.84 SS G_CDS: -0.10 Total: -22.94 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.99 Total: -52.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -3.77 Total: 18.33 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.38 Total: -1.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.21 -9.75 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733927332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.658 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds