Wall clock time and date at job start Thu Mar 26 2020 04:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34560 * 119.18155 * 2 1 4 4 C 1.46898 * 118.64174 * 180.24989 * 3 2 1 5 5 N 1.31803 * 121.29065 * 179.78423 * 4 3 2 6 6 C 1.46503 * 119.99856 * 138.92005 * 5 4 3 7 7 C 1.53000 * 109.46128 * 99.83194 * 6 5 4 8 8 C 1.53041 * 109.44845 * 219.79857 * 6 5 4 9 9 C 1.53199 * 109.31212 * 58.65050 * 8 6 5 10 10 N 1.46919 * 108.77875 * 54.63519 * 9 8 6 11 11 C 1.34769 * 120.63460 * 126.36873 * 10 9 8 12 12 O 1.21280 * 120.00247 * 172.98681 * 11 10 9 13 13 C 1.50702 * 119.99751 * 352.98710 * 11 10 9 14 14 O 1.42901 * 109.47127 * 54.70669 * 13 11 10 15 15 Si 1.86299 * 109.47277 * 294.70295 * 13 11 10 16 16 H 1.48500 * 109.46920 * 59.99716 * 15 13 11 17 17 H 1.48500 * 109.47208 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47078 * 300.00213 * 15 13 11 19 19 C 1.53000 * 109.46841 * 174.70332 * 13 11 10 20 20 C 1.52997 * 109.47581 * 64.45711 * 19 13 11 21 21 C 1.53003 * 109.46915 * 184.45801 * 19 13 11 22 22 C 1.53000 * 109.47217 * 304.45254 * 19 13 11 23 23 C 1.46931 * 118.73985 * 306.39196 * 10 9 8 24 24 C 1.53049 * 109.46082 * 339.85919 * 6 5 4 25 25 C 1.47845 * 117.41391 * 359.51213 * 4 3 2 26 26 C 1.43204 * 120.88678 * 180.27237 * 25 4 3 27 27 N 4.93630 * 133.65382 * 359.97060 * 3 1 2 28 28 C 1.36596 * 118.22628 * 0.24939 * 25 4 3 29 29 N 1.35139 * 121.06769 * 359.97438 * 28 25 4 30 30 H 0.96998 * 118.49434 * 179.97438 * 29 28 25 31 31 H 1.08995 * 109.47208 * 270.25005 * 1 2 3 32 32 H 1.09000 * 109.47017 * 30.25319 * 1 2 3 33 33 H 1.09001 * 109.46703 * 150.25453 * 1 2 3 34 34 H 1.07996 * 120.67626 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.46958 * 339.46365 * 7 6 5 36 36 H 1.08999 * 109.47012 * 99.46705 * 7 6 5 37 37 H 1.08994 * 109.46981 * 219.46736 * 7 6 5 38 38 H 1.09000 * 109.49434 * 178.59997 * 8 6 5 39 39 H 1.08993 * 109.49711 * 298.69703 * 8 6 5 40 40 H 1.09003 * 109.58132 * 294.84408 * 9 8 6 41 41 H 1.09003 * 109.58170 * 174.42127 * 9 8 6 42 42 H 1.09006 * 109.47090 * 63.55497 * 20 19 13 43 43 H 1.08995 * 109.47601 * 183.55555 * 20 19 13 44 44 H 1.08998 * 109.47114 * 303.56153 * 20 19 13 45 45 H 1.08996 * 109.47539 * 59.99819 * 21 19 13 46 46 H 1.09002 * 109.47039 * 179.97438 * 21 19 13 47 47 H 1.09007 * 109.46975 * 299.99997 * 21 19 13 48 48 H 1.09001 * 109.46780 * 60.00611 * 22 19 13 49 49 H 1.09002 * 109.47207 * 180.02562 * 22 19 13 50 50 H 1.08996 * 109.47165 * 300.00137 * 22 19 13 51 51 H 1.08998 * 109.58558 * 293.82599 * 23 10 9 52 52 H 1.08990 * 109.59280 * 173.39312 * 23 10 9 53 53 H 1.08998 * 109.49284 * 61.30575 * 24 6 5 54 54 H 1.08998 * 109.49801 * 181.40909 * 24 6 5 55 55 H 1.08000 * 119.46537 * 179.97438 * 28 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1631 1.1748 0.0000 4 6 3.6320 1.1610 -0.0056 5 7 4.3272 2.2808 -0.0101 6 6 5.5292 2.4001 0.8188 7 6 6.7702 2.1773 -0.0479 8 6 5.5843 3.7984 1.4383 9 6 4.3238 4.0308 2.2774 10 7 4.1995 2.9419 3.2558 11 6 4.0637 3.2111 4.5694 12 8 3.8348 2.3132 5.3519 13 6 4.1961 4.6278 5.0658 14 8 3.2882 5.4695 4.3520 15 14 5.9403 5.2217 4.7908 16 1 6.2568 5.1736 3.3407 17 1 6.0707 6.6180 5.2794 18 1 6.8838 4.3471 5.5325 19 6 3.8701 4.6772 6.5598 20 6 4.9090 3.8653 7.3358 21 6 3.8959 6.1298 7.0396 22 6 2.4791 4.0861 6.7981 23 6 4.2268 1.5537 2.7752 24 6 5.4884 1.3490 1.9305 25 6 4.3004 -0.1578 0.0002 26 6 5.7289 -0.2579 0.0011 27 7 6.8621 -0.3374 0.0018 28 6 3.5189 -1.2781 0.0052 29 7 2.1705 -1.1878 0.0053 30 1 1.6518 -2.0074 0.0085 31 1 -0.3633 0.0045 1.0276 32 1 -0.3633 0.8877 -0.5178 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6208 2.1087 0.0004 35 1 6.4894 1.6386 -0.9529 36 1 7.2026 3.1408 -0.3179 37 1 7.5028 1.5938 0.5097 38 1 6.4653 3.8798 2.0750 39 1 5.6370 4.5454 0.6463 40 1 3.4488 4.0398 1.6274 41 1 4.4033 4.9842 2.7998 42 1 5.8909 4.3236 7.2171 43 1 4.6416 3.8479 8.3922 44 1 4.9350 2.8459 6.9507 45 1 3.1557 6.7083 6.4869 46 1 3.6631 6.1651 8.1039 47 1 4.8868 6.5510 6.8698 48 1 2.4607 3.0513 6.4563 49 1 2.2466 4.1217 7.8624 50 1 1.7389 4.6646 6.2454 51 1 3.3439 1.3606 2.1658 52 1 4.2422 0.8726 3.6259 53 1 5.4727 0.3527 1.4887 54 1 6.3702 1.4535 2.5626 55 1 3.9862 -2.2517 0.0090 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001067247432.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 04:31:06 Heat of formation + Delta-G solvation = 25.299777 kcal Electronic energy + Delta-G solvation = -37861.401227 eV Core-core repulsion = 33479.887768 eV Total energy + Delta-G solvation = -4381.513459 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 373.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08777 -40.93552 -39.87621 -37.94345 -36.97762 -35.73210 -34.23437 -34.00897 -32.59532 -31.39386 -30.55271 -29.23728 -28.59098 -28.02044 -27.90386 -26.04975 -25.00659 -24.12393 -23.89475 -22.82689 -21.16282 -20.88429 -19.68777 -18.94774 -18.25426 -17.58936 -17.20477 -16.81978 -16.62265 -16.45260 -16.09123 -15.55057 -15.41073 -15.36991 -15.30134 -15.03786 -14.91809 -14.83551 -14.44257 -14.33856 -14.25143 -14.04235 -13.88982 -13.73096 -13.35003 -13.26250 -13.13128 -13.05885 -12.85655 -12.76303 -12.72593 -12.59541 -12.37785 -12.25323 -12.16165 -12.02404 -11.97819 -11.80696 -11.69945 -11.45472 -11.38710 -11.25099 -11.07583 -10.86637 -10.28073 -10.25117 -9.63723 -9.18971 -8.16030 -7.91770 -7.53899 0.03831 0.32111 1.37084 1.42321 1.48898 1.64453 1.84828 1.98774 2.01446 2.43126 2.63504 2.76646 3.06142 3.43441 3.65808 3.68083 3.85747 3.90828 4.03487 4.14431 4.24275 4.28612 4.33728 4.36892 4.38409 4.41310 4.42488 4.50066 4.58206 4.66244 4.67908 4.75345 4.76983 4.85221 4.86563 4.91799 4.96069 4.97603 4.99240 5.00797 5.06747 5.13002 5.15976 5.22794 5.27613 5.29566 5.32139 5.33688 5.37777 5.40767 5.61965 5.64654 5.84282 5.89938 5.93750 6.05742 6.34876 6.59945 6.85607 7.34978 7.58999 7.93458 Molecular weight = 373.22amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.003866 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.757037 B = 7240.966840 C = 8291.036790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.159 3.841 3 C -0.202 4.202 4 C 0.280 3.720 5 N -0.636 5.636 6 C 0.135 3.865 7 C -0.143 4.143 8 C -0.109 4.109 9 C 0.123 3.877 10 N -0.606 5.606 11 C 0.496 3.504 12 O -0.589 6.589 13 C -0.005 4.005 14 O -0.870 6.870 15 Si 0.900 3.100 16 H -0.256 1.256 17 H -0.279 1.279 18 H -0.293 1.293 19 C -0.080 4.080 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.111 4.111 23 C 0.117 3.883 24 C -0.162 4.162 25 C -0.235 4.235 26 C 0.289 3.711 27 N -0.473 5.473 28 C 0.247 3.753 29 N -0.564 5.564 30 H 0.447 0.553 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.057 0.943 49 H 0.048 0.952 50 H 0.023 0.977 51 H 0.075 0.925 52 H 0.069 0.931 53 H 0.113 0.887 54 H 0.043 0.957 55 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 -19.065 -11.244 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.227 4.227 4 C 0.105 3.895 5 N -0.357 5.357 6 C 0.044 3.956 7 C -0.201 4.201 8 C -0.148 4.148 9 C 0.001 3.999 10 N -0.339 5.339 11 C 0.289 3.711 12 O -0.473 6.473 13 C -0.106 4.106 14 O -0.818 6.818 15 Si 0.729 3.271 16 H -0.181 1.181 17 H -0.205 1.205 18 H -0.221 1.221 19 C -0.081 4.081 20 C -0.205 4.205 21 C -0.177 4.177 22 C -0.168 4.168 23 C -0.005 4.005 24 C -0.202 4.202 25 C -0.251 4.251 26 C -0.020 4.020 27 N -0.153 5.153 28 C 0.108 3.892 29 N -0.170 5.170 30 H 0.289 0.711 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.042 0.958 51 H 0.093 0.907 52 H 0.088 0.912 53 H 0.130 0.870 54 H 0.062 0.938 55 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.299 -18.188 -11.468 22.145 hybrid contribution 0.157 -0.122 0.259 0.327 sum -5.142 -18.310 -11.209 22.076 Atomic orbital electron populations 1.21147 0.85067 1.06420 1.05099 1.20416 0.96055 0.84507 0.93956 1.21695 0.90197 0.98452 1.12324 1.21593 0.93276 0.87436 0.87155 1.72147 1.15233 1.28541 1.19762 1.20589 0.90483 0.93905 0.90635 1.22553 0.97233 1.01059 0.99263 1.22037 0.97718 0.96710 0.98328 1.21782 0.96316 0.91819 0.90024 1.48071 1.72502 1.06550 1.06749 1.23429 0.72506 0.94087 0.81029 1.90263 1.51877 1.49871 1.55315 1.23794 1.04756 0.88907 0.93181 1.94909 1.55741 1.60913 1.70214 0.87215 0.80632 0.79871 0.79416 1.18096 1.20479 1.22131 1.20833 0.95917 0.94448 0.96888 1.22082 0.97322 1.01044 1.00069 1.21633 1.00097 0.96327 0.99681 1.21632 0.95680 1.00827 0.98709 1.21505 0.97672 0.83892 0.97456 1.23178 0.97949 1.01603 0.97436 1.17534 0.84971 0.96153 1.26491 1.24544 0.92465 0.94144 0.90877 1.81303 1.12499 1.07546 1.13974 1.22149 0.82835 0.99651 0.84525 1.41009 1.04938 1.09623 1.61398 0.71080 0.88994 0.88972 0.86974 0.84278 0.92955 0.93285 0.92472 0.93214 0.91072 0.92910 0.88569 0.94618 0.91638 0.92082 0.93967 0.91707 0.94838 0.92453 0.93267 0.95795 0.90693 0.91244 0.86956 0.93782 0.76240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 10.03 71.24 0.71 0.30 16 2 C 0.16 1.58 6.80 41.06 0.28 1.85 16 3 C -0.20 -4.30 9.01 23.70 0.21 -4.08 16 4 C 0.28 7.80 4.10 43.96 0.18 7.98 16 5 N -0.64 -23.17 9.15 -289.77 -2.65 -25.82 16 6 C 0.14 5.25 0.66 3.63 0.00 5.25 16 7 C -0.14 -5.24 7.47 71.98 0.54 -4.71 16 8 C -0.11 -4.85 4.29 30.67 0.13 -4.72 16 9 C 0.12 6.19 4.69 86.37 0.40 6.60 16 10 N -0.61 -30.38 2.85 -818.90 -2.34 -32.72 16 11 C 0.50 27.50 5.49 87.66 0.48 27.98 16 12 O -0.59 -32.58 10.84 -3.03 -0.03 -32.62 16 13 C -0.01 -0.29 0.12 29.85 0.00 -0.29 16 14 O -0.87 -57.55 14.06 -148.98 -2.09 -59.65 16 15 Si 0.90 47.99 20.84 68.60 1.43 49.42 16 16 H -0.26 -13.25 4.02 99.48 0.40 -12.85 16 17 H -0.28 -14.86 6.40 99.48 0.64 -14.22 16 18 H -0.29 -14.98 6.46 99.48 0.64 -14.34 16 19 C -0.08 -4.12 0.35 -52.18 -0.02 -4.14 16 20 C -0.15 -6.86 7.56 71.98 0.54 -6.32 16 21 C -0.12 -5.79 7.90 71.98 0.57 -5.22 16 22 C -0.11 -5.60 8.00 71.98 0.58 -5.02 16 23 C 0.12 4.84 6.01 86.36 0.52 5.36 16 24 C -0.16 -6.14 3.72 30.68 0.11 -6.03 16 25 C -0.24 -4.92 4.68 -19.87 -0.09 -5.01 16 26 C 0.29 7.74 8.81 88.33 0.78 8.51 16 27 N -0.47 -14.70 14.98 -2.57 -0.04 -14.74 16 28 C 0.25 1.87 10.86 83.80 0.91 2.78 16 29 N -0.56 -1.81 5.18 -182.76 -0.95 -2.76 16 30 H 0.45 -2.90 8.69 -92.71 -0.81 -3.71 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.45 8.06 -2.39 -0.02 0.43 16 33 H 0.11 -0.40 8.12 -2.39 -0.02 -0.42 16 34 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.05 1.88 6.13 -2.39 -0.01 1.87 16 36 H 0.05 1.77 7.69 -2.39 -0.02 1.75 16 37 H 0.06 2.13 6.18 -2.39 -0.01 2.11 16 38 H 0.05 2.30 6.45 -2.39 -0.02 2.28 16 39 H 0.07 3.05 8.11 -2.39 -0.02 3.03 16 40 H 0.05 2.68 7.74 -2.39 -0.02 2.67 16 41 H 0.10 5.54 3.20 -2.39 -0.01 5.53 16 42 H 0.03 1.61 5.59 -2.38 -0.01 1.59 16 43 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.06 3.00 5.66 -2.39 -0.01 2.99 16 45 H 0.04 2.20 7.57 -2.39 -0.02 2.18 16 46 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.03 1.58 5.78 -2.38 -0.01 1.57 16 48 H 0.06 3.03 5.33 -2.39 -0.01 3.01 16 49 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.02 1.27 7.81 -2.39 -0.02 1.25 16 51 H 0.08 2.83 5.07 -2.39 -0.01 2.82 16 52 H 0.07 2.94 7.05 -2.39 -0.02 2.93 16 53 H 0.11 3.66 2.55 -41.45 -0.11 3.56 16 54 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 55 H 0.22 -0.48 8.06 -2.91 -0.02 -0.50 16 Total: -1.00 -90.11 384.92 0.53 -89.58 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.36 Total: 8.23 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.85 Total: 21.08 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -5.98 Total: -76.04 kcal Atomic # 8 Polarization: -90.13 SS G_CDS: -2.13 Total: -92.26 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.43 Total: 49.42 kcal Total: -90.11 0.53 -89.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001067247432.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.876 kcal (2) G-P(sol) polarization free energy of solvation -90.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds