Wall clock time and date at job start Thu Mar 26 2020 04:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34750 * 119.46855 * 2 1 4 4 C 1.47060 * 118.17152 * 180.31307 * 3 2 1 5 5 N 1.31794 * 121.51278 * 193.23574 * 4 3 2 6 6 C 1.46498 * 120.00616 * 159.94495 * 5 4 3 7 7 C 1.53006 * 109.45904 * 84.83922 * 6 5 4 8 8 C 1.53034 * 109.46585 * 204.81815 * 6 5 4 9 9 C 1.53186 * 109.31184 * 58.65256 * 8 6 5 10 10 N 1.46921 * 108.77686 * 54.64113 * 9 8 6 11 11 C 1.34775 * 120.63614 * 126.36732 * 10 9 8 12 12 O 1.21282 * 119.99690 * 6.52799 * 11 10 9 13 13 C 1.50700 * 120.00378 * 186.53045 * 11 10 9 14 14 O 1.42903 * 109.46982 * 294.90595 * 13 11 10 15 15 Si 1.86303 * 109.47098 * 54.90572 * 13 11 10 16 16 H 1.48501 * 109.47148 * 174.44894 * 15 13 11 17 17 H 1.48494 * 109.47095 * 54.44564 * 15 13 11 18 18 H 1.48506 * 109.46919 * 294.44741 * 15 13 11 19 19 C 1.53002 * 109.47378 * 174.90689 * 13 11 10 20 20 C 1.52999 * 109.46963 * 47.93475 * 19 13 11 21 21 C 1.52997 * 109.46911 * 167.93878 * 19 13 11 22 22 C 1.53005 * 109.46868 * 287.93848 * 19 13 11 23 23 C 1.46927 * 118.73494 * 306.63889 * 10 9 8 24 24 C 1.52766 * 109.00768 * 53.31204 * 23 10 9 25 25 C 1.48012 * 116.98263 * 13.50827 * 4 3 2 26 26 C 1.43192 * 121.12394 * 166.58638 * 25 4 3 27 27 N 5.35766 * 170.01239 * 251.18919 * 2 1 3 28 28 C 1.36915 * 117.67117 * 346.34619 * 25 4 3 29 29 N 1.35333 * 120.53058 * 0.05637 * 28 25 4 30 30 H 0.96996 * 118.76553 * 194.83870 * 29 28 25 31 31 H 1.09002 * 109.47360 * 89.99599 * 1 2 3 32 32 H 1.09002 * 109.47295 * 210.00269 * 1 2 3 33 33 H 1.09005 * 109.47227 * 329.99493 * 1 2 3 34 34 H 1.07998 * 120.91464 * 0.29418 * 3 2 1 35 35 H 1.08994 * 109.47364 * 207.80780 * 7 6 5 36 36 H 1.09001 * 109.47254 * 327.81255 * 7 6 5 37 37 H 1.09008 * 109.46683 * 87.80742 * 7 6 5 38 38 H 1.09010 * 109.49290 * 298.70433 * 8 6 5 39 39 H 1.09000 * 109.52750 * 178.62393 * 8 6 5 40 40 H 1.08994 * 109.58923 * 294.84639 * 9 8 6 41 41 H 1.09003 * 109.70429 * 174.49783 * 9 8 6 42 42 H 1.09007 * 109.46994 * 60.00096 * 20 19 13 43 43 H 1.08994 * 109.47104 * 179.97438 * 20 19 13 44 44 H 1.08999 * 109.47606 * 300.00671 * 20 19 13 45 45 H 1.08992 * 109.47198 * 59.99907 * 21 19 13 46 46 H 1.09004 * 109.46798 * 180.02562 * 21 19 13 47 47 H 1.09000 * 109.47177 * 299.99494 * 21 19 13 48 48 H 1.08994 * 109.47185 * 57.27630 * 22 19 13 49 49 H 1.08995 * 109.46519 * 177.27345 * 22 19 13 50 50 H 1.08995 * 109.46657 * 297.27593 * 22 19 13 51 51 H 1.09000 * 109.58654 * 173.14258 * 23 10 9 52 52 H 1.08998 * 109.58589 * 293.57058 * 23 10 9 53 53 H 1.09004 * 109.56591 * 185.55291 * 24 23 10 54 54 H 1.08996 * 109.36227 * 65.49813 * 24 23 10 55 55 H 1.07994 * 119.72154 * 179.77351 * 28 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1732 0.0000 4 6 3.6401 1.1399 -0.0071 5 7 4.3547 2.2171 0.2497 6 6 5.7530 2.0863 0.6665 7 6 6.6446 1.9642 -0.5709 8 6 6.1632 3.3222 1.4705 9 6 5.2465 3.4604 2.6900 10 7 5.2820 2.2053 3.4529 11 6 5.5753 2.2093 4.7684 12 8 5.6965 3.2614 5.3594 13 6 5.7526 0.9065 5.5048 14 8 4.5120 0.1976 5.5242 15 14 7.0432 -0.1237 4.6424 16 1 7.3150 -1.3463 5.4403 17 1 8.2938 0.6646 4.5029 18 1 6.5493 -0.5107 3.2964 19 6 6.2010 1.1889 6.9402 20 6 5.3064 2.2695 7.5506 21 6 6.0922 -0.0920 7.7697 22 6 7.6529 1.6716 6.9352 23 6 4.9975 0.9451 2.7532 24 6 5.9116 0.8356 1.5341 25 6 4.2809 -0.1567 -0.3217 26 6 5.6764 -0.2363 -0.6328 27 7 6.7834 -0.2996 -0.8796 28 6 3.4939 -1.2768 -0.2999 29 7 2.1773 -1.1862 -0.0005 30 1 1.6923 -1.9963 0.2217 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6361 2.1120 0.0048 35 1 7.5410 1.3980 -0.3185 36 1 6.0998 1.4485 -1.3618 37 1 6.9279 2.9592 -0.9142 38 1 6.0723 4.2100 0.8445 39 1 7.1960 3.2150 1.8020 40 1 4.2269 3.6589 2.3601 41 1 5.5930 4.2804 3.3192 42 1 4.2720 1.9257 7.5541 43 1 5.6255 2.4704 8.5733 44 1 5.3838 3.1821 6.9595 45 1 6.7295 -0.8618 7.3348 46 1 6.4113 0.1093 8.7924 47 1 5.0579 -0.4359 7.7733 48 1 7.7394 2.5566 6.3048 49 1 7.9569 1.9189 7.9523 50 1 8.2965 0.8832 6.5450 51 1 5.1822 0.1054 3.4232 52 1 3.9571 0.9342 2.4285 53 1 5.6416 -0.0466 0.9535 54 1 6.9467 0.7511 1.8649 55 1 3.9266 -2.2397 -0.5279 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001067247432.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 04:31:17 Heat of formation + Delta-G solvation = 64.365617 kcal Electronic energy + Delta-G solvation = -38028.106771 eV Core-core repulsion = 33648.287334 eV Total energy + Delta-G solvation = -4379.819437 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 373.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.28856 -40.98398 -40.09228 -38.13168 -36.95535 -35.78934 -34.34300 -33.92761 -32.42182 -31.67847 -30.60407 -29.27591 -28.55730 -28.09595 -27.86687 -26.08431 -25.10542 -24.20618 -23.89414 -22.88039 -21.21085 -20.93633 -19.68085 -19.06001 -18.25638 -17.84600 -17.25100 -16.94376 -16.78081 -16.53021 -15.91131 -15.77721 -15.57413 -15.53462 -15.24746 -15.10201 -15.07456 -15.02360 -14.55911 -14.29503 -14.23482 -14.04556 -13.89257 -13.81495 -13.32899 -13.20776 -13.13806 -13.00395 -12.88222 -12.76946 -12.63197 -12.60419 -12.50022 -12.22941 -12.12002 -12.04435 -11.95074 -11.80869 -11.73390 -11.45833 -11.28465 -11.13160 -11.07939 -10.79498 -10.18109 -9.97968 -9.88133 -9.31775 -8.24926 -8.03696 -7.58918 0.06483 0.49504 1.32746 1.34939 1.43680 1.64017 1.87548 1.94861 2.08574 2.34658 2.59845 2.68543 3.06306 3.34358 3.60543 3.68856 3.77563 3.86350 4.04912 4.09170 4.20198 4.29518 4.30286 4.30729 4.34748 4.37953 4.39734 4.49435 4.53553 4.60818 4.67196 4.71901 4.74680 4.81580 4.88050 4.89039 4.93685 4.94364 4.95811 4.98875 5.02528 5.05507 5.10547 5.12923 5.15895 5.19368 5.27263 5.29108 5.37007 5.41009 5.57975 5.58169 5.80302 5.88667 5.99953 6.06174 6.38738 6.58269 6.81429 7.17300 7.59760 7.85394 Molecular weight = 373.22amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.004047 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.998508 B = 6916.819165 C = 7485.229465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.148 3.852 3 C -0.194 4.194 4 C 0.257 3.743 5 N -0.582 5.582 6 C 0.113 3.887 7 C -0.153 4.153 8 C -0.095 4.095 9 C 0.119 3.881 10 N -0.611 5.611 11 C 0.494 3.506 12 O -0.583 6.583 13 C -0.006 4.006 14 O -0.876 6.876 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.302 1.302 18 H -0.243 1.243 19 C -0.084 4.084 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.123 3.877 24 C -0.167 4.167 25 C -0.238 4.238 26 C 0.285 3.715 27 N -0.472 5.472 28 C 0.240 3.760 29 N -0.582 5.582 30 H 0.443 0.557 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.013 0.987 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.032 0.968 46 H 0.060 0.940 47 H 0.041 0.959 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.090 0.910 52 H 0.054 0.946 53 H 0.115 0.885 54 H 0.040 0.960 55 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 -6.525 -15.596 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.042 3.958 3 C -0.219 4.219 4 C 0.078 3.922 5 N -0.298 5.298 6 C 0.021 3.979 7 C -0.211 4.211 8 C -0.134 4.134 9 C -0.003 4.003 10 N -0.345 5.345 11 C 0.287 3.713 12 O -0.467 6.467 13 C -0.107 4.107 14 O -0.824 6.824 15 Si 0.736 3.264 16 H -0.207 1.207 17 H -0.231 1.231 18 H -0.169 1.169 19 C -0.085 4.085 20 C -0.198 4.198 21 C -0.170 4.170 22 C -0.198 4.198 23 C 0.000 4.000 24 C -0.207 4.207 25 C -0.254 4.254 26 C -0.023 4.023 27 N -0.153 5.153 28 C 0.103 3.897 29 N -0.189 5.189 30 H 0.285 0.715 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.171 0.829 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.056 0.944 51 H 0.108 0.892 52 H 0.073 0.927 53 H 0.131 0.869 54 H 0.059 0.941 55 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.001 -5.657 -16.035 18.792 hybrid contribution 0.192 -0.474 0.515 0.726 sum -7.809 -6.132 -15.520 18.424 Atomic orbital electron populations 1.21086 0.84856 1.05787 1.05434 1.20549 0.96005 0.84440 0.94844 1.21644 0.89180 0.98728 1.12353 1.21834 0.94195 0.86355 0.89769 1.72795 1.06737 1.27443 1.22860 1.20831 0.90036 0.93689 0.93341 1.23129 0.99185 1.01584 0.97200 1.21696 0.97769 0.98072 0.95817 1.21385 1.00100 0.86723 0.92115 1.48201 1.69702 1.07843 1.08735 1.23689 0.72028 0.94154 0.81381 1.90084 1.55360 1.36033 1.65256 1.23893 1.03266 0.90392 0.93184 1.94927 1.25486 1.69218 1.92728 0.87463 0.75859 0.82422 0.80655 1.20669 1.23078 1.16889 1.20904 0.94071 0.95351 0.98200 1.22290 0.97047 1.01387 0.99065 1.21543 1.00792 0.96503 0.98157 1.21914 0.96003 0.99897 1.02006 1.21776 0.97813 0.87157 0.93214 1.23331 0.99240 1.00788 0.97302 1.17449 0.86555 0.97366 1.24064 1.24124 0.92479 0.95618 0.90057 1.81316 1.12111 1.06447 1.15386 1.22231 0.82975 0.99384 0.85143 1.41060 1.07617 1.10734 1.59535 0.71541 0.87435 0.88525 0.89228 0.82872 0.91992 0.91890 0.92845 0.89176 0.92967 0.91522 0.91175 0.96800 0.94058 0.88634 0.94862 0.92112 0.94013 0.93589 0.90902 0.94381 0.89201 0.92747 0.86863 0.94091 0.77015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.09 71.23 0.72 0.25 16 2 C 0.15 1.75 6.75 41.07 0.28 2.03 16 3 C -0.19 -4.00 9.90 23.78 0.24 -3.77 16 4 C 0.26 7.30 4.88 44.06 0.21 7.52 16 5 N -0.58 -20.14 9.07 -289.48 -2.63 -22.77 16 6 C 0.11 4.20 0.66 3.63 0.00 4.20 16 7 C -0.15 -5.30 7.11 71.98 0.51 -4.79 16 8 C -0.09 -3.64 4.94 30.67 0.15 -3.49 16 9 C 0.12 5.20 6.16 86.36 0.53 5.73 16 10 N -0.61 -30.87 2.83 -819.75 -2.32 -33.19 16 11 C 0.49 27.93 5.66 87.66 0.50 28.43 16 12 O -0.58 -33.57 10.99 -3.04 -0.03 -33.61 16 13 C -0.01 -0.35 0.14 29.85 0.00 -0.35 16 14 O -0.88 -57.98 15.06 -148.98 -2.24 -60.23 16 15 Si 0.91 47.42 19.28 68.60 1.32 48.74 16 16 H -0.28 -14.51 6.39 99.48 0.64 -13.87 16 17 H -0.30 -15.49 6.80 99.48 0.68 -14.81 16 18 H -0.24 -12.03 3.85 99.48 0.38 -11.64 16 19 C -0.08 -4.42 0.36 -52.18 -0.02 -4.44 16 20 C -0.14 -7.39 7.89 71.98 0.57 -6.82 16 21 C -0.11 -5.51 7.93 71.98 0.57 -4.94 16 22 C -0.14 -6.56 7.40 71.98 0.53 -6.03 16 23 C 0.12 5.79 4.66 86.22 0.40 6.19 16 24 C -0.17 -6.83 2.57 30.53 0.08 -6.76 16 25 C -0.24 -5.74 4.39 -19.75 -0.09 -5.83 16 26 C 0.29 8.40 8.00 88.33 0.71 9.11 16 27 N -0.47 -15.67 14.29 -7.63 -0.11 -15.78 16 28 C 0.24 3.03 10.87 83.84 0.91 3.94 16 29 N -0.58 -4.73 5.20 -182.13 -0.95 -5.67 16 30 H 0.44 -0.05 8.73 -92.71 -0.81 -0.86 16 31 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.10 0.04 8.09 -2.39 -0.02 0.02 16 33 H 0.09 0.51 8.06 -2.38 -0.02 0.49 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 35 H 0.06 2.30 6.19 -2.39 -0.01 2.28 16 36 H 0.06 2.14 4.98 -2.39 -0.01 2.12 16 37 H 0.05 1.74 7.83 -2.38 -0.02 1.72 16 38 H 0.09 3.06 8.09 -2.38 -0.02 3.04 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.86 7.74 -2.39 -0.02 2.84 16 41 H 0.07 3.15 7.05 -2.39 -0.02 3.14 16 42 H 0.01 0.74 8.04 -2.38 -0.02 0.72 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.10 5.32 4.41 -63.83 -0.28 5.03 16 45 H 0.03 1.58 6.17 -2.39 -0.01 1.57 16 46 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.04 2.21 7.42 -2.39 -0.02 2.19 16 48 H 0.04 2.23 6.74 -2.39 -0.02 2.21 16 49 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 50 H 0.04 1.71 5.52 -2.39 -0.01 1.70 16 51 H 0.09 4.78 2.65 -2.39 -0.01 4.77 16 52 H 0.05 2.51 6.53 -2.39 -0.02 2.49 16 53 H 0.11 4.20 2.55 -48.37 -0.12 4.07 16 54 H 0.04 1.84 6.57 -2.39 -0.02 1.83 16 55 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -88.23 384.33 -0.07 -88.29 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.08 Total: 14.02 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.81 Total: 20.19 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -6.00 Total: -77.41 kcal Atomic # 8 Polarization: -91.56 SS G_CDS: -2.28 Total: -93.83 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.32 Total: 48.74 kcal Total: -88.23 -0.07 -88.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001067247432.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.659 kcal (2) G-P(sol) polarization free energy of solvation -88.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds