Wall clock time and date at job start Thu Mar 26 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46941 * 2 1 4 4 C 1.53005 * 109.46992 * 240.00458 * 2 1 3 5 5 C 1.52992 * 109.47526 * 119.99875 * 2 1 3 6 6 O 1.42902 * 109.47311 * 186.95687 * 5 2 1 7 7 Si 1.86302 * 109.47340 * 306.95905 * 5 2 1 8 8 H 1.48499 * 109.47200 * 174.80721 * 7 5 2 9 9 H 1.48495 * 109.47163 * 294.81197 * 7 5 2 10 10 H 1.48504 * 109.46992 * 54.81071 * 7 5 2 11 11 C 1.50706 * 109.47103 * 66.95653 * 5 2 1 12 12 O 1.21279 * 120.00013 * 322.15128 * 11 5 2 13 13 N 1.34776 * 119.99734 * 142.14442 * 11 5 2 14 14 C 1.46958 * 120.36489 * 355.26797 * 13 11 5 15 15 C 1.52344 * 109.06543 * 68.32654 * 14 13 11 16 16 C 1.53797 * 109.16026 * 72.68213 * 15 14 13 17 17 C 1.52444 * 109.43655 * 282.16078 * 16 15 14 18 18 C 1.53958 * 110.72067 * 113.72947 * 17 16 15 19 19 C 1.52932 * 109.75349 * 315.63294 * 18 17 16 20 20 H 1.08999 * 109.45964 * 47.10070 * 19 18 17 21 21 N 1.46498 * 109.54159 * 167.18516 * 19 18 17 22 22 C 1.31807 * 119.99503 * 260.41391 * 21 19 18 23 23 C 1.47054 * 121.50709 * 218.01996 * 22 21 19 24 24 C 1.34857 * 118.09725 * 166.56712 * 23 22 21 25 25 N 1.36245 * 121.08975 * 0.19165 * 24 23 22 26 26 H 0.97001 * 118.75690 * 194.91964 * 25 24 23 27 27 C 1.35330 * 122.47776 * 14.90752 * 25 24 23 28 28 C 1.36783 * 120.50411 * 344.86146 * 27 25 24 29 29 C 1.43204 * 121.12278 * 180.48454 * 28 27 25 30 30 N 8.24921 * 100.21560 * 129.79083 * 2 1 3 31 31 C 1.45329 * 120.35784 * 175.24600 * 13 11 5 32 32 H 1.08997 * 109.46931 * 302.87423 * 1 2 3 33 33 H 1.08992 * 109.47220 * 62.87678 * 1 2 3 34 34 H 1.09001 * 109.46894 * 182.87910 * 1 2 3 35 35 H 1.08998 * 109.47120 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46864 * 300.00387 * 3 2 1 37 37 H 1.09001 * 109.47107 * 59.99873 * 3 2 1 38 38 H 1.08999 * 109.46567 * 305.17295 * 4 2 1 39 39 H 1.08994 * 109.47246 * 65.17442 * 4 2 1 40 40 H 1.08995 * 109.46954 * 185.17476 * 4 2 1 41 41 H 1.08999 * 109.53337 * 188.20347 * 14 13 11 42 42 H 1.09002 * 109.53489 * 308.44676 * 14 13 11 43 43 H 1.09001 * 109.52225 * 192.58768 * 15 14 13 44 44 H 1.08997 * 109.52433 * 312.77925 * 15 14 13 45 45 H 1.09000 * 109.47576 * 42.14471 * 16 15 14 46 46 H 1.08998 * 109.47901 * 162.16295 * 16 15 14 47 47 H 1.09008 * 109.22207 * 234.04664 * 17 16 15 48 48 H 1.09000 * 109.23177 * 353.40350 * 17 16 15 49 49 H 1.09000 * 109.43262 * 75.70952 * 18 17 16 50 50 H 1.09000 * 109.42811 * 195.60523 * 18 17 16 51 51 H 1.08002 * 120.91410 * 346.78705 * 23 22 21 52 52 H 1.07995 * 119.44011 * 179.97438 * 24 23 22 53 53 H 1.08002 * 119.74684 * 164.83785 * 27 25 24 54 54 H 1.09006 * 109.67166 * 343.10023 * 31 13 11 55 55 H 1.08993 * 109.67719 * 103.60089 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 8 3.4598 -0.5815 1.3336 7 14 1.2516 0.0255 2.7629 8 1 1.6483 -0.7536 3.9632 9 1 1.7037 1.4319 2.9139 10 1 -0.2261 -0.0065 2.6182 11 6 1.6833 -2.1830 1.1662 12 8 0.6178 -2.5214 0.6958 13 7 2.5482 -3.1143 1.6146 14 6 3.8822 -2.7216 2.0899 15 6 3.7367 -1.9330 3.3852 16 6 3.3466 -2.8944 4.5205 17 6 1.8626 -3.2273 4.4159 18 6 1.6609 -4.7146 4.0728 19 6 2.6320 -5.1259 2.9653 20 1 3.6312 -4.7622 3.2050 21 7 2.6568 -6.5864 2.8529 22 6 3.6326 -7.2738 3.4121 23 6 4.2116 -8.4571 2.7586 24 6 5.3729 -8.9445 3.2407 25 7 5.9924 -8.3619 4.3052 26 1 6.9168 -8.5906 4.4896 27 6 5.3667 -7.4762 5.1147 28 6 4.1909 -6.8933 4.7289 29 6 3.5229 -5.9467 5.5705 30 7 2.9931 -5.1957 6.2381 31 6 2.1715 -4.5178 1.6339 32 1 -0.3633 0.5578 0.8631 33 1 -0.3633 0.4685 -0.9146 34 1 -0.3633 -1.0264 0.0516 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9564 0.8900 38 1 1.6030 -1.7186 -1.2969 39 1 1.7544 -0.1566 -2.1368 40 1 3.1260 -0.8021 -1.2042 41 1 4.4816 -3.6136 2.2716 42 1 4.3689 -2.1007 1.3378 43 1 4.6838 -1.4501 3.6261 44 1 2.9611 -1.1765 3.2660 45 1 3.9313 -3.8106 4.4377 46 1 3.5462 -2.4215 5.4820 47 1 1.3780 -3.0095 5.3677 48 1 1.4113 -2.6145 3.6356 49 1 1.8461 -5.3198 4.9603 50 1 0.6373 -4.8727 3.7333 51 1 3.7221 -8.9199 1.9144 52 1 5.8171 -9.8130 2.7775 53 1 5.7988 -7.2279 6.0729 54 1 1.0890 -4.6085 1.5438 55 1 2.6535 -5.0385 0.8065 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049856875.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 00:27:55 Heat of formation + Delta-G solvation = 41.120768 kcal Electronic energy + Delta-G solvation = -38079.002910 eV Core-core repulsion = 33698.175501 eV Total energy + Delta-G solvation = -4380.827409 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 373.215 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.66409 -40.92694 -39.48249 -37.82888 -37.04197 -36.32807 -34.80272 -33.88312 -32.66147 -31.75487 -30.72389 -28.66344 -28.02883 -27.95216 -27.19841 -25.91174 -25.10185 -23.65143 -23.36799 -22.59985 -21.05300 -20.80791 -19.82728 -19.10195 -18.25609 -17.80968 -17.69083 -16.87910 -16.73946 -16.44580 -16.20994 -15.82759 -15.49923 -15.26897 -15.16291 -14.98928 -14.89209 -14.69256 -14.58171 -14.32379 -14.26091 -14.14611 -13.99616 -13.73955 -13.27974 -13.22503 -13.11307 -13.04947 -12.94013 -12.79257 -12.60865 -12.51380 -12.43462 -12.20427 -12.02332 -11.81839 -11.73583 -11.64871 -11.46504 -11.33299 -11.21553 -11.09523 -10.97256 -10.43404 -10.33317 -10.20479 -9.64320 -9.13742 -8.22713 -7.63651 -7.34063 0.09042 0.43037 1.34919 1.36372 1.49399 1.63801 1.88818 1.96248 2.19250 2.48774 2.67306 2.87758 3.18824 3.56783 3.69178 3.72974 3.90256 4.07441 4.17388 4.19979 4.25553 4.30339 4.32119 4.35085 4.40984 4.42417 4.51096 4.56115 4.59873 4.73677 4.75308 4.82089 4.83577 4.88347 4.90730 4.97228 5.02075 5.02960 5.06055 5.10431 5.12129 5.18986 5.22166 5.26349 5.28907 5.29938 5.38994 5.42118 5.52053 5.64438 5.71176 5.75369 5.84883 5.87966 5.98526 6.26344 6.47332 6.63248 6.90278 7.27903 7.56473 8.06952 Molecular weight = 373.22amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.003422 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.157988 B = 8179.837335 C = 8711.617832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.114 4.114 4 C -0.104 4.104 5 C 0.004 3.996 6 O -0.843 6.843 7 Si 0.907 3.093 8 H -0.257 1.257 9 H -0.280 1.280 10 H -0.307 1.307 11 C 0.496 3.504 12 O -0.608 6.608 13 N -0.596 5.596 14 C 0.148 3.852 15 C -0.126 4.126 16 C -0.106 4.106 17 C -0.108 4.108 18 C -0.143 4.143 19 C 0.102 3.898 20 H 0.071 0.929 21 N -0.643 5.643 22 C 0.270 3.730 23 C -0.199 4.199 24 C 0.137 3.863 25 N -0.576 5.576 26 H 0.450 0.550 27 C 0.256 3.744 28 C -0.240 4.240 29 C 0.275 3.725 30 N -0.458 5.458 31 C 0.135 3.865 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.092 0.908 50 H 0.024 0.976 51 H 0.154 0.846 52 H 0.225 0.775 53 H 0.211 0.789 54 H 0.048 0.952 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.046 -20.816 6.346 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.080 4.080 3 C -0.171 4.171 4 C -0.161 4.161 5 C -0.098 4.098 6 O -0.790 6.790 7 Si 0.738 3.262 8 H -0.184 1.184 9 H -0.206 1.206 10 H -0.237 1.237 11 C 0.289 3.711 12 O -0.493 6.493 13 N -0.328 5.328 14 C 0.027 3.973 15 C -0.164 4.164 16 C -0.143 4.143 17 C -0.146 4.146 18 C -0.181 4.181 19 C -0.008 4.008 20 H 0.089 0.911 21 N -0.363 5.363 22 C 0.094 3.906 23 C -0.223 4.223 24 C 0.012 3.988 25 N -0.183 5.183 26 H 0.292 0.708 27 C 0.117 3.883 28 C -0.256 4.256 29 C -0.036 4.036 30 N -0.138 5.138 31 C 0.011 3.989 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.109 0.891 50 H 0.043 0.957 51 H 0.172 0.828 52 H 0.241 0.759 53 H 0.228 0.772 54 H 0.067 0.933 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.780 -19.501 7.256 24.419 hybrid contribution -0.230 0.470 0.351 0.630 sum 12.550 -19.031 7.607 24.032 Atomic orbital electron populations 1.22331 0.96539 1.03109 1.00002 1.20850 0.93533 0.96082 0.97501 1.21560 1.01326 0.94744 0.99483 1.21453 0.99972 0.98519 0.96134 1.23593 1.01075 0.87684 0.97406 1.94759 1.03469 1.89572 1.91208 0.87258 0.74002 0.79785 0.85125 1.18368 1.20603 1.23671 1.23443 0.81707 0.92071 0.73918 1.90307 1.26505 1.83635 1.48888 1.47813 1.16566 1.05276 1.63114 1.21838 0.82353 0.95447 0.97683 1.22348 1.02191 0.98160 0.93701 1.21781 0.94922 0.99338 0.98266 1.21602 0.97903 0.96150 0.98967 1.22833 0.98313 0.96832 1.00099 1.21747 0.98200 0.87773 0.93102 0.91134 1.71899 1.18313 1.04309 1.41749 1.22169 0.84553 0.94833 0.89056 1.22237 0.98697 0.98520 1.02886 1.22360 0.93526 0.95987 0.86977 1.41211 1.16541 1.36198 1.24325 0.70756 1.22187 0.88605 0.83132 0.94379 1.17423 1.03643 1.07685 0.96850 1.25284 0.92916 0.92307 0.93065 1.81181 1.08949 1.11949 1.11680 1.20996 0.99271 0.82046 0.96636 0.94942 0.92062 0.91115 0.92909 0.91991 0.95347 0.95408 0.92524 0.94015 0.94116 0.87611 0.92438 0.90849 0.91582 0.93488 0.94351 0.94441 0.89059 0.95707 0.82799 0.75861 0.77212 0.93294 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.94 7.51 71.98 0.54 -7.40 16 2 C -0.08 -4.02 0.35 -52.18 -0.02 -4.03 16 3 C -0.11 -5.34 7.91 71.98 0.57 -4.77 16 4 C -0.10 -5.03 7.94 71.98 0.57 -4.46 16 5 C 0.00 0.23 0.12 29.85 0.00 0.23 16 6 O -0.84 -50.17 10.36 -148.98 -1.54 -51.72 16 7 Si 0.91 50.00 19.56 68.60 1.34 51.35 16 8 H -0.26 -14.01 4.34 99.48 0.43 -13.58 16 9 H -0.28 -15.26 6.65 99.48 0.66 -14.60 16 10 H -0.31 -17.04 6.19 99.48 0.62 -16.43 16 11 C 0.50 28.01 3.56 87.66 0.31 28.33 16 12 O -0.61 -36.20 12.26 -3.03 -0.04 -36.23 16 13 N -0.60 -30.67 1.68 -823.94 -1.39 -32.06 16 14 C 0.15 7.12 4.86 86.07 0.42 7.53 16 15 C -0.13 -6.10 4.39 30.65 0.13 -5.97 16 16 C -0.11 -4.59 4.41 30.68 0.14 -4.45 16 17 C -0.11 -5.11 4.16 30.73 0.13 -4.99 16 18 C -0.14 -6.34 4.57 30.90 0.14 -6.20 16 19 C 0.10 4.20 1.57 45.12 0.07 4.27 16 20 H 0.07 2.88 2.66 -2.39 -0.01 2.87 16 21 N -0.64 -23.10 10.17 -308.42 -3.14 -26.23 16 22 C 0.27 6.70 6.57 44.05 0.29 6.99 16 23 C -0.20 -2.62 10.32 23.81 0.25 -2.38 16 24 C 0.14 0.10 11.10 83.23 0.92 1.02 16 25 N -0.58 1.30 5.22 -193.95 -1.01 0.29 16 26 H 0.45 -5.15 8.88 -92.71 -0.82 -5.98 16 27 C 0.26 1.30 10.86 83.81 0.91 2.21 16 28 C -0.24 -4.74 5.51 -19.78 -0.11 -4.85 16 29 C 0.27 7.85 10.24 88.33 0.90 8.75 16 30 N -0.46 -15.78 14.06 19.00 0.27 -15.51 16 31 C 0.13 6.40 5.59 86.75 0.48 6.89 16 32 H 0.03 1.57 5.34 -2.39 -0.01 1.56 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.07 3.77 5.19 -2.39 -0.01 3.76 16 35 H 0.05 2.61 7.52 -2.39 -0.02 2.59 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.03 1.33 6.05 -2.39 -0.01 1.31 16 38 H 0.03 1.41 6.59 -2.39 -0.02 1.39 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 40 H 0.04 2.11 7.76 -2.39 -0.02 2.09 16 41 H 0.04 1.74 6.07 -2.39 -0.01 1.73 16 42 H 0.11 5.73 5.68 -7.98 -0.05 5.68 16 43 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.07 3.97 0.97 -2.39 0.00 3.97 16 45 H 0.07 2.62 3.75 -2.39 -0.01 2.61 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 48 H 0.04 2.00 3.24 -2.39 -0.01 1.99 16 49 H 0.09 3.83 3.30 -28.52 -0.09 3.73 16 50 H 0.02 1.19 7.87 -2.39 -0.02 1.17 16 51 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 52 H 0.23 -2.13 8.06 -2.91 -0.02 -2.15 16 53 H 0.21 -0.62 8.06 -2.91 -0.02 -0.64 16 54 H 0.05 2.58 6.84 -2.38 -0.02 2.57 16 55 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -91.31 370.92 1.52 -89.79 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.37 Total: 3.60 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.66 Total: 16.73 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -5.27 Total: -73.51 kcal Atomic # 8 Polarization: -86.37 SS G_CDS: -1.58 Total: -87.95 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.34 Total: 51.35 kcal Total: -91.31 1.52 -89.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049856875.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.908 kcal (2) G-P(sol) polarization free energy of solvation -91.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds