Wall clock time and date at job start Thu Mar 26 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00038 * 2 1 4 4 C 1.38215 * 120.00241 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99720 * 359.74464 * 4 3 2 6 6 C 1.38217 * 119.99933 * 0.50779 * 5 4 3 7 7 C 1.50698 * 120.00298 * 179.76518 * 6 5 4 8 8 O 1.42902 * 109.46749 * 29.72568 * 7 6 5 9 9 Si 1.86292 * 109.47368 * 149.72342 * 7 6 5 10 10 H 1.48502 * 109.47325 * 180.02562 * 9 7 6 11 11 H 1.48506 * 109.47305 * 300.00453 * 9 7 6 12 12 H 1.48509 * 109.47085 * 60.00450 * 9 7 6 13 13 C 1.50703 * 109.47112 * 269.72714 * 7 6 5 14 14 O 1.21287 * 119.99877 * 124.99953 * 13 7 6 15 15 N 1.34770 * 120.00098 * 304.99663 * 13 7 6 16 16 C 1.39846 * 120.00265 * 180.02562 * 15 13 7 17 17 N 1.31262 * 125.47122 * 0.02651 * 16 15 13 18 18 N 1.40423 * 106.94513 * 179.76258 * 17 16 15 19 19 H 0.97003 * 126.81632 * 180.22713 * 18 17 16 20 20 C 1.35197 * 106.37137 * 0.34422 * 18 17 16 21 21 C 1.47990 * 126.04298 * 179.91146 * 20 18 17 22 22 C 1.39625 * 120.05972 * 359.72217 * 21 20 18 23 23 C 1.38089 * 120.16399 * 180.02562 * 22 21 20 24 24 C 1.38066 * 120.29725 * 359.97438 * 23 22 21 25 25 C 1.39702 * 120.12904 * 0.02562 * 24 23 22 26 26 C 1.43196 * 120.08449 * 179.97438 * 25 24 23 27 27 N 9.95036 * 70.13385 * 243.46835 * 2 1 3 28 28 C 1.39223 * 120.06607 * 179.73927 * 21 20 18 29 29 N 1.31782 * 107.92261 * 359.65356 * 20 18 17 30 30 C 1.38215 * 119.99923 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47381 * 270.02542 * 1 2 3 32 32 H 1.08999 * 109.46973 * 30.02492 * 1 2 3 33 33 H 1.08995 * 109.47212 * 150.02608 * 1 2 3 34 34 H 1.08001 * 120.00279 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00417 * 180.27402 * 5 4 3 37 37 H 0.97000 * 119.99759 * 359.97438 * 15 13 7 38 38 H 1.08002 * 119.92106 * 359.74214 * 22 21 20 39 39 H 1.08001 * 119.85076 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.93823 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.15050 * 0.02562 * 28 21 20 42 42 H 1.07993 * 119.99821 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0022 8 8 5.5824 -2.3308 0.6762 9 14 3.3269 -3.7999 0.8808 10 1 4.0697 -5.0858 0.8824 11 1 3.0789 -3.3703 2.2806 12 1 2.0296 -3.9779 0.1804 13 6 4.5857 -2.9380 -1.4183 14 8 5.7161 -3.1750 -1.7886 15 7 3.5548 -3.0644 -2.2771 16 6 3.7883 -3.4694 -3.5951 17 7 4.9627 -3.7534 -4.1080 18 7 4.7473 -4.1179 -5.4469 19 1 5.4204 -4.3859 -6.0919 20 6 3.4158 -4.0185 -5.6594 21 6 2.7133 -4.3023 -6.9306 22 6 3.4365 -4.7093 -8.0536 23 6 2.7833 -4.9741 -9.2410 24 6 1.4119 -4.8392 -9.3267 25 6 0.6762 -4.4328 -8.2108 26 6 -0.7461 -4.2927 -8.3008 27 7 -1.8744 -4.1802 -8.3727 28 6 1.3303 -4.1637 -7.0093 29 7 2.8533 -3.6297 -4.5328 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6583 2.1327 -0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3516 -0.0001 0.0113 37 1 2.6508 -2.8753 -1.9808 38 1 4.5099 -4.8128 -7.9946 39 1 3.3477 -5.2882 -10.1066 40 1 0.9069 -5.0475 -10.2584 41 1 0.7666 -3.8485 -6.1436 42 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611704153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 03:14:59 Heat of formation + Delta-G solvation = 88.609935 kcal Electronic energy + Delta-G solvation = -30400.749809 eV Core-core repulsion = 26120.424645 eV Total energy + Delta-G solvation = -4280.325164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 362.117 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95361 -39.80103 -39.02956 -37.97753 -36.77899 -34.22445 -33.04444 -32.66937 -32.18919 -31.56382 -31.27558 -29.30776 -29.12619 -26.17724 -25.03987 -24.55149 -23.95497 -22.31412 -21.47807 -20.89543 -20.09908 -19.36316 -18.76628 -17.51134 -16.84395 -16.06901 -16.04532 -15.69674 -15.65898 -15.46185 -14.91232 -14.86676 -14.41736 -14.26269 -14.08486 -13.54094 -13.50245 -13.38976 -13.23912 -13.15386 -12.84703 -12.69026 -12.40520 -12.37045 -12.01029 -11.86693 -11.80914 -11.69997 -11.22544 -10.84806 -10.56403 -10.40710 -10.31362 -10.24272 -9.91292 -9.87267 -9.61588 -9.52684 -9.09912 -8.97745 -8.13771 -8.02115 -7.68885 -6.13344 -5.60770 0.11873 0.53220 1.86230 2.11903 2.19412 2.28067 2.55872 2.61410 3.00664 3.14181 3.20057 3.35640 3.38466 3.44353 3.49128 3.92627 4.12136 4.29153 4.45103 4.46762 4.51095 4.63586 4.77157 4.99182 5.06268 5.40166 5.40898 5.45876 5.64732 5.70302 5.71975 5.72805 5.82687 5.91652 5.93524 6.12290 6.14510 6.18822 6.35935 6.38818 6.44241 6.57890 6.84971 6.90510 7.07947 7.11647 7.25278 7.28685 7.35784 7.67636 7.78694 7.88682 8.55861 9.19551 9.78741 Molecular weight = 362.12amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.002810 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.908631 B = 9963.598351 C =11365.135293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.060 4.060 7 C 0.031 3.969 8 O -0.801 6.801 9 Si 0.933 3.067 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.291 1.291 13 C 0.483 3.517 14 O -0.480 6.480 15 N -0.637 5.637 16 C 0.454 3.546 17 N -0.281 5.281 18 N -0.479 5.479 19 H 0.438 0.562 20 C 0.320 3.680 21 C -0.019 4.019 22 C -0.071 4.071 23 C -0.116 4.116 24 C -0.057 4.057 25 C -0.027 4.027 26 C 0.255 3.745 27 N -0.411 5.411 28 C -0.020 4.020 29 N -0.543 5.543 30 C -0.156 4.156 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.416 0.584 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 -2.425 -18.458 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.061 4.061 7 C -0.073 4.073 8 O -0.743 6.743 9 Si 0.760 3.240 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.220 1.220 13 C 0.272 3.728 14 O -0.347 6.347 15 N -0.297 5.297 16 C 0.085 3.915 17 N -0.118 5.118 18 N -0.199 5.199 19 H 0.284 0.716 20 C 0.044 3.956 21 C -0.022 4.022 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.078 4.078 25 C -0.031 4.031 26 C -0.061 4.061 27 N -0.085 5.085 28 C -0.043 4.043 29 N -0.277 5.277 30 C -0.174 4.174 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.253 0.747 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.329 -2.816 -17.487 20.019 hybrid contribution 0.465 0.103 -0.550 0.728 sum -8.864 -2.713 -18.038 20.280 Atomic orbital electron populations 1.20724 0.92082 1.02068 1.01644 1.19696 0.95189 0.93277 1.01245 1.20766 0.94208 0.96662 1.04495 1.21137 0.94154 0.97800 1.01461 1.21099 1.01124 0.90966 0.97048 1.21375 0.92475 0.98703 0.93576 1.22649 1.02470 0.94331 0.87881 1.95106 1.22207 1.89569 1.67429 0.86522 0.74208 0.80726 0.82541 1.20069 1.18809 1.21977 1.24799 0.83906 0.75426 0.88661 1.90561 1.22136 1.45448 1.76517 1.44372 1.13712 1.67722 1.03902 1.20973 0.86550 0.95295 0.88657 1.79010 1.18003 1.26863 0.87914 1.48128 1.06794 1.53820 1.11208 0.71628 1.21731 0.82873 0.97615 0.93412 1.17414 0.92526 1.03174 0.89053 1.21370 1.00322 0.95672 0.91795 1.20965 0.93854 1.00682 0.97900 1.21343 0.94103 0.95098 0.97288 1.15858 0.84943 1.06826 0.95452 1.25552 0.92505 0.93951 0.94068 1.81292 1.11875 1.08297 1.07066 1.21336 0.92981 0.93184 0.96794 1.70319 1.32696 1.26106 0.98553 1.21131 0.94409 0.97405 1.04489 0.91837 0.92202 0.91878 0.87316 0.87100 0.85353 0.74676 0.84978 0.84027 0.84434 0.83024 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 36.00 0.36 -1.09 16 2 C -0.09 -1.66 5.88 -104.62 -0.62 -2.28 16 3 C -0.14 -2.49 9.70 -39.58 -0.38 -2.87 16 4 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 5 C -0.08 -2.00 9.35 -39.58 -0.37 -2.37 16 6 C -0.06 -1.46 4.39 -104.62 -0.46 -1.92 16 7 C 0.03 0.86 0.70 -29.03 -0.02 0.84 16 8 O -0.80 -27.51 16.18 -55.09 -0.89 -28.40 16 9 Si 0.93 22.75 24.29 -169.99 -4.13 18.62 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -5.87 6.38 56.52 0.36 -5.51 16 13 C 0.48 13.10 5.91 -10.99 -0.06 13.04 16 14 O -0.48 -14.74 15.19 -14.31 -0.22 -14.95 16 15 N -0.64 -14.33 4.97 -12.86 -0.06 -14.40 16 16 C 0.45 9.53 8.81 -321.08 -2.83 6.70 16 17 N -0.28 -5.88 10.95 30.00 0.33 -5.55 16 18 N -0.48 -6.74 7.33 32.24 0.24 -6.51 16 19 H 0.44 4.12 8.10 -182.35 -1.48 2.64 16 20 C 0.32 4.31 7.82 -155.47 -1.22 3.09 16 21 C -0.02 -0.17 5.87 -105.02 -0.62 -0.78 16 22 C -0.07 -0.39 9.69 -39.12 -0.38 -0.77 16 23 C -0.12 -0.44 10.02 -39.70 -0.40 -0.84 16 24 C -0.06 -0.26 9.75 -39.10 -0.38 -0.64 16 25 C -0.03 -0.19 5.73 -106.99 -0.61 -0.81 16 26 C 0.25 2.35 15.32 -22.47 -0.34 2.01 16 27 N -0.41 -4.83 18.54 41.84 0.78 -4.06 16 28 C -0.02 -0.17 9.40 -38.78 -0.36 -0.54 16 29 N -0.54 -9.33 10.85 -11.58 -0.13 -9.46 16 30 C -0.16 -3.19 7.30 -39.58 -0.29 -3.48 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.13 3.34 7.48 -52.49 -0.39 2.95 16 37 H 0.42 8.29 7.07 -40.82 -0.29 8.00 16 38 H 0.13 0.43 7.18 -52.49 -0.38 0.06 16 39 H 0.14 0.16 8.06 -52.49 -0.42 -0.27 16 40 H 0.14 0.35 8.06 -52.48 -0.42 -0.08 16 41 H 0.15 1.44 7.84 -52.49 -0.41 1.03 16 42 H 0.12 2.21 5.26 -52.49 -0.28 1.93 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -40.15 374.07 -12.84 -52.99 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.01 Total: 1.64 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -9.38 Total: 4.44 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 1.15 Total: -39.97 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.11 Total: -43.35 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.13 Total: 18.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.15 -12.84 -52.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611704153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.601 kcal (2) G-P(sol) polarization free energy of solvation -40.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds