Wall clock time and date at job start Thu Mar 26 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00038 * 2 1 4 4 C 1.38215 * 120.00241 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99720 * 359.74464 * 4 3 2 6 6 C 1.38217 * 119.99933 * 0.50779 * 5 4 3 7 7 C 1.50698 * 120.00298 * 179.76518 * 6 5 4 8 8 O 1.42902 * 109.46749 * 29.72568 * 7 6 5 9 9 Si 1.86292 * 109.47368 * 149.72342 * 7 6 5 10 10 H 1.48502 * 109.47325 * 180.02562 * 9 7 6 11 11 H 1.48506 * 109.47305 * 300.00453 * 9 7 6 12 12 H 1.48509 * 109.47085 * 60.00450 * 9 7 6 13 13 C 1.50703 * 109.47112 * 269.72714 * 7 6 5 14 14 O 1.21287 * 119.99877 * 124.99953 * 13 7 6 15 15 N 1.34770 * 120.00098 * 304.99663 * 13 7 6 16 16 C 1.39846 * 120.00265 * 180.02562 * 15 13 7 17 17 N 1.31262 * 125.47122 * 0.02651 * 16 15 13 18 18 N 1.40423 * 106.94513 * 179.76258 * 17 16 15 19 19 H 0.97003 * 126.81632 * 180.22713 * 18 17 16 20 20 C 1.35197 * 106.37137 * 0.34422 * 18 17 16 21 21 C 1.47990 * 126.04298 * 179.91146 * 20 18 17 22 22 C 1.39625 * 120.05972 * 359.72217 * 21 20 18 23 23 C 1.38089 * 120.16399 * 180.02562 * 22 21 20 24 24 C 1.38066 * 120.29725 * 359.97438 * 23 22 21 25 25 C 1.39702 * 120.12904 * 0.02562 * 24 23 22 26 26 C 1.43196 * 120.08449 * 179.97438 * 25 24 23 27 27 N 9.95036 * 70.13385 * 243.46835 * 2 1 3 28 28 C 1.39223 * 120.06607 * 179.73927 * 21 20 18 29 29 N 1.31782 * 107.92261 * 359.65356 * 20 18 17 30 30 C 1.38215 * 119.99923 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47381 * 270.02542 * 1 2 3 32 32 H 1.08999 * 109.46973 * 30.02492 * 1 2 3 33 33 H 1.08995 * 109.47212 * 150.02608 * 1 2 3 34 34 H 1.08001 * 120.00279 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00417 * 180.27402 * 5 4 3 37 37 H 0.97000 * 119.99759 * 359.97438 * 15 13 7 38 38 H 1.08002 * 119.92106 * 359.74214 * 22 21 20 39 39 H 1.08001 * 119.85076 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.93823 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.15050 * 0.02562 * 28 21 20 42 42 H 1.07993 * 119.99821 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0022 8 8 5.5824 -2.3308 0.6762 9 14 3.3269 -3.7999 0.8808 10 1 4.0697 -5.0858 0.8824 11 1 3.0789 -3.3703 2.2806 12 1 2.0296 -3.9779 0.1804 13 6 4.5857 -2.9380 -1.4183 14 8 5.7161 -3.1750 -1.7886 15 7 3.5548 -3.0644 -2.2771 16 6 3.7883 -3.4694 -3.5951 17 7 4.9627 -3.7534 -4.1080 18 7 4.7473 -4.1179 -5.4469 19 1 5.4204 -4.3859 -6.0919 20 6 3.4158 -4.0185 -5.6594 21 6 2.7133 -4.3023 -6.9306 22 6 3.4365 -4.7093 -8.0536 23 6 2.7833 -4.9741 -9.2410 24 6 1.4119 -4.8392 -9.3267 25 6 0.6762 -4.4328 -8.2108 26 6 -0.7461 -4.2927 -8.3008 27 7 -1.8744 -4.1802 -8.3727 28 6 1.3303 -4.1637 -7.0093 29 7 2.8533 -3.6297 -4.5328 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6583 2.1327 -0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3516 -0.0001 0.0113 37 1 2.6508 -2.8753 -1.9808 38 1 4.5099 -4.8128 -7.9946 39 1 3.3477 -5.2882 -10.1066 40 1 0.9069 -5.0475 -10.2584 41 1 0.7666 -3.8485 -6.1436 42 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611704153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 03:14:58 Heat of formation + Delta-G solvation = 61.240540 kcal Electronic energy + Delta-G solvation = -30401.936636 eV Core-core repulsion = 26120.424645 eV Total energy + Delta-G solvation = -4281.511990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 362.117 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.26860 -40.90748 -40.32031 -39.70243 -37.54623 -35.96206 -34.76295 -33.65257 -33.32812 -32.91739 -32.20336 -31.06305 -30.47049 -27.50094 -26.89613 -25.37109 -24.69432 -23.73332 -22.86885 -22.10735 -21.69861 -20.51637 -20.28593 -18.70315 -17.71692 -17.64707 -17.27670 -17.14653 -17.00575 -16.53530 -16.37870 -15.88222 -15.76484 -15.36451 -15.17724 -15.06138 -14.72108 -14.67629 -14.34156 -14.19259 -14.00503 -13.90698 -13.72198 -13.50585 -13.27912 -13.02066 -12.73068 -12.57590 -12.42740 -12.35575 -12.32184 -12.21795 -12.05835 -11.76779 -11.42805 -11.35976 -11.28425 -10.99765 -10.17668 -10.03121 -9.61770 -9.54986 -9.32982 -8.48674 -7.90166 -0.47191 -0.09306 0.52472 0.60165 0.78618 1.12861 1.24011 1.33708 1.41027 1.53623 1.59473 1.90054 1.93939 2.14509 2.50034 2.79629 2.87705 2.98130 3.12513 3.50987 3.89956 4.02643 4.03934 4.06560 4.13153 4.26574 4.32623 4.42517 4.46740 4.55499 4.61916 4.65718 4.82056 4.93053 4.95010 4.98970 4.99581 5.09863 5.19499 5.27209 5.28791 5.30985 5.43818 5.59444 5.69249 5.71340 5.77305 5.95184 6.03416 6.26634 6.29809 6.42954 6.99653 7.24896 7.70642 Molecular weight = 362.12amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.002810 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.908631 B = 9963.598351 C =11365.135293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.121 4.121 5 C -0.129 4.129 6 C -0.086 4.086 7 C -0.020 4.020 8 O -0.888 6.888 9 Si 0.964 3.036 10 H -0.303 1.303 11 H -0.263 1.263 12 H -0.213 1.213 13 C 0.486 3.514 14 O -0.536 6.536 15 N -0.627 5.627 16 C 0.433 3.567 17 N -0.336 5.336 18 N -0.464 5.464 19 H 0.458 0.542 20 C 0.347 3.653 21 C -0.047 4.047 22 C -0.053 4.053 23 C -0.102 4.102 24 C -0.032 4.032 25 C -0.038 4.038 26 C 0.279 3.721 27 N -0.462 5.462 28 C -0.023 4.023 29 N -0.559 5.559 30 C -0.163 4.163 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.426 0.574 38 H 0.158 0.842 39 H 0.184 0.816 40 H 0.168 0.832 41 H 0.135 0.865 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 -2.376 -22.153 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.087 4.087 7 C -0.120 4.120 8 O -0.833 6.833 9 Si 0.786 3.214 10 H -0.231 1.231 11 H -0.187 1.187 12 H -0.138 1.138 13 C 0.276 3.724 14 O -0.408 6.408 15 N -0.286 5.286 16 C 0.064 3.936 17 N -0.173 5.173 18 N -0.186 5.186 19 H 0.308 0.692 20 C 0.071 3.929 21 C -0.050 4.050 22 C -0.074 4.074 23 C -0.119 4.119 24 C -0.053 4.053 25 C -0.041 4.041 26 C -0.036 4.036 27 N -0.137 5.137 28 C -0.046 4.046 29 N -0.293 5.293 30 C -0.181 4.181 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.266 0.734 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.185 0.815 41 H 0.153 0.847 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.426 -2.764 -21.266 25.301 hybrid contribution 1.685 0.110 0.287 1.713 sum -11.741 -2.653 -20.979 24.187 Atomic orbital electron populations 1.20842 0.88070 1.04073 1.03399 1.20266 0.97911 0.92057 0.97953 1.21282 0.93110 0.98696 1.01941 1.21374 0.95585 0.96852 1.00038 1.20936 0.99152 0.93435 1.01201 1.21032 0.94259 0.96840 0.96593 1.23533 1.01710 0.98424 0.88302 1.94999 1.26529 1.91755 1.70020 0.86032 0.76443 0.76831 0.82050 1.23056 1.18714 1.13776 1.24519 0.83869 0.74744 0.89280 1.90502 1.24290 1.48248 1.77714 1.43644 1.12994 1.67280 1.04681 1.20902 0.87642 0.96635 0.88446 1.78845 1.19289 1.28055 0.91153 1.47837 1.07860 1.53444 1.09452 0.69200 1.22484 0.82352 0.94206 0.93845 1.17371 0.92571 1.06927 0.88123 1.21736 1.01587 0.93128 0.90919 1.21412 0.93494 0.98815 0.98220 1.21778 0.94527 0.91826 0.97174 1.15833 0.83839 1.08524 0.95940 1.25822 0.92722 0.92446 0.92604 1.81316 1.13374 1.10324 1.08714 1.21186 0.92922 0.93454 0.97024 1.70306 1.32235 1.27833 0.98962 1.21243 0.92405 0.99648 1.04766 0.89974 0.89633 0.90630 0.82640 0.84549 0.90326 0.73394 0.82487 0.79916 0.81479 0.84740 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 10.01 71.23 0.71 -1.57 16 2 C -0.08 -2.61 5.88 -19.87 -0.12 -2.73 16 3 C -0.13 -4.16 9.70 22.27 0.22 -3.95 16 4 C -0.12 -4.64 10.05 22.27 0.22 -4.41 16 5 C -0.13 -6.57 9.35 22.27 0.21 -6.37 16 6 C -0.09 -4.39 4.39 -19.86 -0.09 -4.48 16 7 C -0.02 -1.16 0.70 29.10 0.02 -1.14 16 8 O -0.89 -67.08 16.18 -129.99 -2.10 -69.19 16 9 Si 0.96 47.56 24.29 68.60 1.67 49.23 16 10 H -0.30 -16.22 7.11 99.48 0.71 -15.52 16 11 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.21 -7.80 6.38 99.48 0.63 -7.17 16 13 C 0.49 28.32 5.91 87.66 0.52 28.84 16 14 O -0.54 -35.94 15.19 15.94 0.24 -35.70 16 15 N -0.63 -29.43 4.97 -312.99 -1.56 -30.99 16 16 C 0.43 18.85 8.81 260.88 2.30 21.15 16 17 N -0.34 -14.72 10.95 -58.99 -0.65 -15.37 16 18 N -0.46 -12.91 7.33 -51.90 -0.38 -13.29 16 19 H 0.46 8.02 8.10 -213.11 -1.73 6.30 16 20 C 0.35 9.01 7.82 136.87 1.07 10.08 16 21 C -0.05 -0.72 5.87 -20.12 -0.12 -0.84 16 22 C -0.05 -0.34 9.69 22.57 0.22 -0.12 16 23 C -0.10 -0.15 10.02 22.19 0.22 0.07 16 24 C -0.03 -0.13 9.75 22.58 0.22 0.09 16 25 C -0.04 -0.42 5.73 -21.40 -0.12 -0.55 16 26 C 0.28 4.63 15.32 88.33 1.35 5.98 16 27 N -0.46 -10.40 18.54 19.01 0.35 -10.05 16 28 C -0.02 -0.35 9.40 22.79 0.21 -0.13 16 29 N -0.56 -19.30 10.85 -190.56 -2.07 -21.37 16 30 C -0.16 -6.44 7.30 22.27 0.16 -6.28 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 33 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.08 4.67 7.48 -2.91 -0.02 4.64 16 37 H 0.43 17.23 7.07 -92.71 -0.66 16.57 16 38 H 0.16 0.23 7.18 -2.91 -0.02 0.21 16 39 H 0.18 -1.02 8.06 -2.91 -0.02 -1.05 16 40 H 0.17 -0.20 8.06 -2.91 -0.02 -0.23 16 41 H 0.13 2.49 7.84 -2.91 -0.02 2.47 16 42 H 0.14 4.69 5.26 -2.91 -0.02 4.68 16 Total: -1.00 -104.19 374.07 2.16 -102.03 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.56 Total: 11.03 kcal Atomic # 6 Polarization: 26.45 SS G_CDS: 7.22 Total: 33.66 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -4.30 Total: -91.06 kcal Atomic # 8 Polarization: -103.03 SS G_CDS: -1.86 Total: -104.89 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.67 Total: 49.23 kcal Total: -104.19 2.16 -102.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611704153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.271 kcal (2) G-P(sol) polarization free energy of solvation -104.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds