Wall clock time and date at job start Thu Mar 26 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.70852 * 2 1 4 4 C 1.53199 * 109.58425 * 120.35797 * 2 1 3 5 5 C 1.53043 * 109.30799 * 174.41870 * 4 2 1 6 6 H 1.08994 * 109.45896 * 58.65317 * 5 4 2 7 7 N 1.46504 * 109.45456 * 178.61679 * 5 4 2 8 8 C 1.34774 * 119.99446 * 205.00323 * 7 5 4 9 9 O 1.21285 * 120.00235 * 355.29800 * 8 7 5 10 10 C 1.50700 * 119.99926 * 175.30646 * 8 7 5 11 11 O 1.42908 * 109.47241 * 188.97721 * 10 8 7 12 12 Si 1.86300 * 109.47211 * 308.97667 * 10 8 7 13 13 H 1.48498 * 109.46760 * 60.00148 * 12 10 8 14 14 H 1.48494 * 109.47105 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47019 * 300.00365 * 12 10 8 16 16 C 1.52999 * 109.47122 * 68.97650 * 10 8 7 17 17 C 1.53001 * 109.47152 * 64.30190 * 16 10 8 18 18 C 1.53001 * 109.47364 * 184.29647 * 16 10 8 19 19 C 1.53000 * 109.47256 * 304.29729 * 16 10 8 20 20 C 1.53044 * 109.53734 * 298.62849 * 5 4 2 21 21 C 1.53198 * 109.31007 * 61.37084 * 20 5 4 22 22 N 1.46923 * 108.77446 * 305.36118 * 21 20 5 23 23 C 1.34771 * 120.63292 * 233.60627 * 22 21 20 24 24 O 1.21550 * 120.00265 * 186.07579 * 23 22 21 25 25 C 1.47858 * 119.99755 * 6.08374 * 23 22 21 26 26 C 1.39595 * 120.12888 * 213.90512 * 25 23 22 27 27 C 1.37949 * 119.90022 * 180.02562 * 26 25 23 28 28 C 1.38343 * 120.17555 * 0.02562 * 27 26 25 29 29 C 1.38549 * 120.26641 * 359.97438 * 28 27 26 30 30 F 1.35102 * 119.95154 * 180.02562 * 29 28 27 31 31 C 1.38208 * 120.09216 * 359.72899 * 29 28 27 32 32 H 1.09004 * 109.46841 * 292.35683 * 1 2 3 33 33 H 1.09000 * 109.46765 * 52.34790 * 1 2 3 34 34 H 1.08994 * 109.47263 * 172.35611 * 1 2 3 35 35 H 1.08993 * 109.49317 * 294.36892 * 4 2 1 36 36 H 1.08996 * 109.49602 * 54.43557 * 4 2 1 37 37 H 0.96999 * 120.00464 * 24.98923 * 7 5 4 38 38 H 1.08997 * 109.47275 * 59.99643 * 17 16 10 39 39 H 1.09001 * 109.47316 * 180.02562 * 17 16 10 40 40 H 1.09008 * 109.47006 * 299.99672 * 17 16 10 41 41 H 1.09005 * 109.46814 * 59.99915 * 18 16 10 42 42 H 1.08991 * 109.47617 * 180.02562 * 18 16 10 43 43 H 1.09006 * 109.47125 * 300.00327 * 18 16 10 44 44 H 1.08998 * 109.46571 * 67.16354 * 19 16 10 45 45 H 1.08998 * 109.46785 * 187.16015 * 19 16 10 46 46 H 1.08989 * 109.46948 * 307.16406 * 19 16 10 47 47 H 1.08994 * 109.49453 * 181.32012 * 20 5 4 48 48 H 1.08998 * 109.50013 * 301.42034 * 20 5 4 49 49 H 1.09002 * 109.58549 * 65.15237 * 21 20 5 50 50 H 1.08994 * 109.58135 * 185.43190 * 21 20 5 51 51 H 1.07995 * 120.05055 * 0.02562 * 26 25 23 52 52 H 1.08000 * 119.90959 * 180.02562 * 27 26 25 53 53 H 1.07999 * 119.86508 * 180.02562 * 28 27 26 54 54 H 1.08004 * 120.08655 * 180.29554 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 1.2455 5 6 3.5675 -0.8481 1.1701 6 1 4.0061 0.1471 1.0992 7 7 4.0652 -1.5160 2.3753 8 6 5.3294 -1.3024 2.7907 9 8 6.0814 -0.6258 2.1216 10 6 5.8086 -1.9044 4.0864 11 8 7.0943 -1.3723 4.4122 12 14 4.6033 -1.4924 5.4459 13 1 3.2674 -2.0455 5.1074 14 1 5.0753 -2.0862 6.7226 15 1 4.5063 -0.0178 5.5912 16 6 5.9086 -3.4238 3.9367 17 6 6.9765 -3.7645 2.8953 18 6 6.2915 -4.0448 5.2815 19 6 4.5579 -3.9816 3.4835 20 6 3.9568 -1.6660 -0.0635 21 6 3.4649 -0.9472 -1.3238 22 7 2.0225 -0.6997 -1.1945 23 6 1.1673 -1.1066 -2.1534 24 8 -0.0073 -0.8004 -2.0899 25 6 1.6578 -1.9256 -3.2824 26 6 1.0914 -1.7823 -4.5501 27 6 1.5523 -2.5492 -5.6000 28 6 2.5740 -3.4603 -5.3996 29 6 3.1413 -3.6083 -4.1443 30 9 4.1390 -4.4996 -3.9559 31 6 2.6922 -2.8412 -3.0860 32 1 -0.3633 0.3909 0.9505 33 1 -0.3633 0.6278 -0.8137 34 1 -0.3633 -1.0185 -0.1367 35 1 1.7661 -0.1669 2.1368 36 1 1.6025 -1.7251 1.2916 37 1 3.4848 -2.1118 2.8744 38 1 7.9387 -3.3671 3.2181 39 1 7.0474 -4.8469 2.7882 40 1 6.7037 -3.3221 1.9370 41 1 5.5308 -3.8021 6.0235 42 1 6.3632 -5.1271 5.1748 43 1 7.2539 -3.6474 5.6044 44 1 4.3447 -3.6391 2.4710 45 1 4.5910 -5.0710 3.4992 46 1 3.7759 -3.6321 4.1575 47 1 5.0410 -1.7699 -0.1037 48 1 3.4981 -2.6530 -0.0053 49 1 3.9903 0.0018 -1.4318 50 1 3.6540 -1.5709 -2.1974 51 1 0.2935 -1.0720 -4.7088 52 1 1.1145 -2.4382 -6.5810 53 1 2.9313 -4.0578 -6.2252 54 1 3.1378 -2.9534 -2.1086 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074893411.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:01:59 Heat of formation + Delta-G solvation = -139.480540 kcal Electronic energy + Delta-G solvation = -37586.695852 eV Core-core repulsion = 32824.516397 eV Total energy + Delta-G solvation = -4762.179456 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 379.199 amu Computer time = 20.66 seconds Orbital eigenvalues (eV) -49.95934 -42.11247 -40.80669 -39.54667 -38.49182 -37.46802 -35.63031 -34.46431 -32.37645 -31.85376 -31.72678 -31.54129 -28.76859 -28.05484 -27.87436 -26.35897 -25.45846 -24.63726 -23.98416 -22.92225 -22.10532 -21.24193 -20.59347 -19.52524 -18.65479 -18.03042 -17.48401 -17.31022 -17.24270 -16.94846 -16.79706 -16.64279 -16.37814 -15.95662 -15.59607 -15.52331 -15.24557 -15.03339 -14.87046 -14.66004 -14.59561 -14.41123 -14.11594 -14.00981 -13.87812 -13.59493 -13.32665 -13.26655 -13.14774 -13.01905 -12.90687 -12.82559 -12.75103 -12.52917 -12.40482 -12.37199 -12.12059 -12.02474 -11.89435 -11.69206 -11.64738 -11.51106 -11.29818 -11.01893 -10.52096 -10.36173 -10.09623 -9.85218 -9.74959 -9.70772 -8.07575 -7.56574 -0.30190 0.07363 1.28223 1.40880 1.45892 1.59931 1.78354 2.07853 2.51510 2.56261 2.72549 3.06110 3.36430 3.59606 3.69917 3.73174 3.88425 3.96388 4.00955 4.02982 4.18134 4.19566 4.23654 4.24691 4.31349 4.32319 4.35017 4.44917 4.58573 4.59944 4.74413 4.77486 4.81404 4.84779 4.86548 4.89028 4.89682 4.96037 4.99289 5.00484 5.07861 5.10667 5.14968 5.17670 5.21165 5.24564 5.25705 5.31184 5.33821 5.58183 5.59446 5.70672 5.75535 5.78264 5.87348 6.25843 6.82271 7.00220 7.61230 8.10552 Molecular weight = 379.20amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.002927 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.160049 B = 9563.326901 C =11054.296585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.130 4.130 5 C 0.137 3.863 6 H 0.057 0.943 7 N -0.733 5.733 8 C 0.491 3.509 9 O -0.591 6.591 10 C -0.030 4.030 11 O -0.901 6.901 12 Si 0.927 3.073 13 H -0.221 1.221 14 H -0.276 1.276 15 H -0.321 1.321 16 C -0.085 4.085 17 C -0.102 4.102 18 C -0.129 4.129 19 C -0.159 4.159 20 C -0.137 4.137 21 C 0.089 3.911 22 N -0.597 5.597 23 C 0.561 3.439 24 O -0.547 6.547 25 C -0.117 4.117 26 C -0.078 4.078 27 C -0.084 4.084 28 C -0.125 4.125 29 C 0.077 3.923 30 F -0.145 7.145 31 C -0.142 4.142 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.406 0.594 38 H 0.018 0.982 39 H 0.066 0.934 40 H 0.023 0.977 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.122 0.878 51 H 0.146 0.854 52 H 0.176 0.824 53 H 0.164 0.836 54 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.442 -6.391 -19.310 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.032 3.968 6 H 0.076 0.924 7 N -0.393 5.393 8 C 0.282 3.718 9 O -0.470 6.470 10 C -0.132 4.132 11 O -0.847 6.847 12 Si 0.755 3.245 13 H -0.147 1.147 14 H -0.202 1.202 15 H -0.250 1.250 16 C -0.087 4.087 17 C -0.159 4.159 18 C -0.186 4.186 19 C -0.216 4.216 20 C -0.176 4.176 21 C -0.033 4.033 22 N -0.329 5.329 23 C 0.351 3.649 24 O -0.427 6.427 25 C -0.120 4.120 26 C -0.097 4.097 27 C -0.102 4.102 28 C -0.144 4.144 29 C 0.058 3.942 30 F -0.124 7.124 31 C -0.161 4.161 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.245 0.755 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.140 0.860 51 H 0.164 0.836 52 H 0.193 0.807 53 H 0.182 0.818 54 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.771 -5.477 -18.970 26.564 hybrid contribution 1.265 0.173 0.617 1.418 sum -16.506 -5.304 -18.352 25.246 Atomic orbital electron populations 1.22040 0.91589 1.03031 1.01522 1.21323 0.96175 0.95434 0.82604 0.90213 1.22281 0.92712 1.03070 0.98811 1.20916 0.94473 0.96201 0.85192 0.92449 1.46901 1.13977 1.49806 1.28579 1.23832 0.80418 0.79032 0.88517 1.90388 1.56638 1.41926 1.58038 1.24366 1.02527 0.93457 0.92814 1.94953 1.22301 1.81470 1.86015 0.86720 0.77449 0.76793 0.83530 1.14651 1.20163 1.25048 1.20977 0.95746 0.96411 0.95518 1.21403 0.98464 0.99111 0.96909 1.21733 1.00378 1.00108 0.96362 1.22291 0.95575 1.02136 1.01627 1.22220 1.01268 0.99999 0.94157 1.22435 0.79361 1.02083 0.99439 1.48107 1.07419 1.57119 1.20232 1.18440 0.85328 0.79220 0.81938 1.90829 1.17468 1.57567 1.76842 1.19794 0.98062 0.98934 0.95224 1.21507 0.98517 0.99000 0.90671 1.21386 0.94955 0.93377 1.00489 1.21720 0.96999 0.99897 0.95744 1.17802 0.89588 0.91356 0.95472 1.91527 1.58794 1.66011 1.96040 1.21626 0.97306 0.96878 1.00244 0.91834 0.91504 0.92527 0.89056 0.89530 0.75527 0.96235 0.91557 0.95754 0.93215 0.90480 0.95481 0.91622 0.90100 0.91649 0.92187 0.90007 0.90802 0.86023 0.83636 0.80711 0.81800 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 7.61 71.98 0.55 -2.12 16 2 C 0.15 3.27 3.49 44.98 0.16 3.43 16 3 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.13 -3.06 4.84 30.68 0.15 -2.91 16 5 C 0.14 4.32 2.38 45.02 0.11 4.43 16 6 H 0.06 2.12 7.65 -2.39 -0.02 2.10 16 7 N -0.73 -27.99 3.29 -442.39 -1.46 -29.45 16 8 C 0.49 25.67 4.74 87.66 0.42 26.08 16 9 O -0.59 -36.46 16.20 15.84 0.26 -36.21 16 10 C -0.03 -1.66 0.31 29.85 0.01 -1.65 16 11 O -0.90 -65.80 15.87 -130.10 -2.07 -67.86 16 12 Si 0.93 44.33 22.24 68.60 1.53 45.86 16 13 H -0.22 -7.78 6.06 99.48 0.60 -7.17 16 14 H -0.28 -13.26 6.37 99.48 0.63 -12.63 16 15 H -0.32 -17.21 7.11 99.48 0.71 -16.50 16 16 C -0.09 -3.85 0.38 -52.18 -0.02 -3.87 16 17 C -0.10 -4.72 8.09 71.98 0.58 -4.14 16 18 C -0.13 -5.46 7.78 71.98 0.56 -4.90 16 19 C -0.16 -5.22 6.75 71.98 0.49 -4.74 16 20 C -0.14 -3.78 5.31 30.68 0.16 -3.62 16 21 C 0.09 1.99 5.52 86.36 0.48 2.47 16 22 N -0.60 -13.27 2.97 -798.38 -2.37 -15.64 16 23 C 0.56 12.83 7.20 86.79 0.62 13.46 16 24 O -0.55 -14.61 12.38 -3.87 -0.05 -14.66 16 25 C -0.12 -2.22 5.44 -20.09 -0.11 -2.32 16 26 C -0.08 -1.13 9.61 22.53 0.22 -0.91 16 27 C -0.08 -0.81 10.03 22.23 0.22 -0.59 16 28 C -0.12 -1.46 10.02 22.37 0.22 -1.24 16 29 C 0.08 1.34 7.29 22.34 0.16 1.50 16 30 F -0.15 -2.99 17.26 44.97 0.78 -2.21 16 31 C -0.14 -2.63 7.38 22.57 0.17 -2.46 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.58 6.69 -2.39 -0.02 1.56 16 34 H 0.06 1.34 6.80 -2.39 -0.02 1.33 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 13.29 4.79 -92.71 -0.44 12.84 16 38 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.02 1.14 7.36 -2.38 -0.02 1.12 16 41 H 0.05 1.99 5.37 -2.38 -0.01 1.97 16 42 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.03 1.32 7.80 -2.38 -0.02 1.30 16 44 H 0.06 2.08 5.91 -2.39 -0.01 2.06 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 1.95 5.02 -2.39 -0.01 1.93 16 47 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 48 H 0.08 1.99 7.63 -2.39 -0.02 1.97 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.12 2.39 3.53 -2.39 -0.01 2.38 16 51 H 0.15 1.91 7.98 -2.91 -0.02 1.89 16 52 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 53 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 54 H 0.15 2.86 5.01 -2.91 -0.01 2.84 16 Total: -1.00 -88.06 402.36 2.83 -85.23 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.07 Total: 19.02 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.14 Total: 15.91 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -3.83 Total: -45.09 kcal Atomic # 8 Polarization: -116.87 SS G_CDS: -1.86 Total: -118.73 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.53 Total: 45.86 kcal Total: -88.06 2.83 -85.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074893411.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.249 kcal (2) G-P(sol) polarization free energy of solvation -88.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.66 seconds