Wall clock time and date at job start Thu Mar 26 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47064 * 2 1 4 4 O 1.21294 * 120.00353 * 359.97438 * 3 2 1 5 5 C 1.46849 * 119.99732 * 180.02562 * 3 2 1 6 6 C 1.40052 * 120.10132 * 359.72768 * 5 3 2 7 7 C 1.37090 * 119.89607 * 179.72208 * 6 5 3 8 8 C 1.39213 * 120.10066 * 0.52323 * 7 6 5 9 9 N 1.39314 * 119.89839 * 179.74413 * 8 7 6 10 10 C 1.34772 * 120.00135 * 324.85949 * 9 8 7 11 11 O 1.21281 * 120.00094 * 4.58847 * 10 9 8 12 12 C 1.50702 * 120.00315 * 184.58292 * 10 9 8 13 13 O 1.42898 * 109.47592 * 180.02562 * 12 10 9 14 14 Si 1.86299 * 109.47093 * 300.00396 * 12 10 9 15 15 H 1.48498 * 109.47152 * 59.99800 * 14 12 10 16 16 H 1.48505 * 109.47050 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47441 * 299.99534 * 14 12 10 18 18 C 1.50706 * 109.47091 * 60.00350 * 12 10 9 19 19 C 1.39874 * 126.03655 * 274.69659 * 18 12 10 20 20 N 1.30839 * 108.19870 * 179.81392 * 19 18 12 21 21 N 1.40086 * 108.20200 * 0.43832 * 20 19 18 22 22 C 1.46502 * 126.03289 * 179.73985 * 21 20 19 23 23 C 1.53006 * 109.47214 * 254.97444 * 22 21 20 24 24 C 1.53001 * 109.47150 * 14.97023 * 22 21 20 25 25 C 1.52993 * 109.47222 * 134.97335 * 22 21 20 26 26 C 1.34939 * 107.93013 * 359.71621 * 21 20 19 27 27 C 1.39216 * 120.20082 * 359.77122 * 8 7 6 28 28 C 1.37078 * 120.10346 * 359.95344 * 27 8 7 29 29 H 1.08999 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46874 * 299.99932 * 1 2 3 31 31 H 1.08996 * 109.46914 * 59.99803 * 1 2 3 32 32 H 1.09004 * 109.47267 * 119.99673 * 2 1 3 33 33 H 1.08994 * 109.46999 * 239.99516 * 2 1 3 34 34 H 1.08002 * 120.05432 * 359.96964 * 6 5 3 35 35 H 1.07998 * 119.94635 * 180.27689 * 7 6 5 36 36 H 0.96998 * 120.00028 * 144.86043 * 9 8 7 37 37 H 1.07997 * 125.89862 * 359.97438 * 19 18 12 38 38 H 1.08998 * 109.46872 * 59.99537 * 23 22 21 39 39 H 1.08994 * 109.47249 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46890 * 300.00406 * 23 22 21 41 41 H 1.09000 * 109.46858 * 60.00791 * 24 22 21 42 42 H 1.09004 * 109.47037 * 179.97438 * 24 22 21 43 43 H 1.08993 * 109.47531 * 300.00271 * 24 22 21 44 44 H 1.08998 * 109.47102 * 60.00016 * 25 22 21 45 45 H 1.09004 * 109.47441 * 179.97438 * 25 22 21 46 46 H 1.09001 * 109.47332 * 300.00186 * 25 22 21 47 47 H 1.07997 * 126.12719 * 180.02562 * 26 21 20 48 48 H 1.07999 * 119.94458 * 179.97438 * 27 8 7 49 49 H 1.08001 * 120.05263 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4761 1.6891 -0.0006 6 6 4.3881 0.6262 0.0046 7 6 5.7350 0.8814 -0.0017 8 6 6.1967 2.1947 -0.0023 9 7 7.5664 2.4493 -0.0033 10 6 8.4038 1.6342 0.6680 11 8 7.9764 0.6334 1.2034 12 6 9.8713 1.9662 0.7534 13 8 10.5445 0.9586 1.5108 14 14 10.5926 2.0380 -0.9628 15 1 9.8933 3.0848 -1.7503 16 1 12.0386 2.3657 -0.8786 17 1 10.4210 0.7211 -1.6274 18 6 10.0456 3.3026 1.4279 19 6 9.9911 4.5529 0.8033 20 7 10.1842 5.4730 1.7132 21 7 10.3780 4.8358 2.9456 22 6 10.6327 5.4979 4.2274 23 6 12.1086 5.3401 4.5986 24 6 10.2926 6.9850 4.1098 25 6 9.7629 4.8601 5.3126 26 6 10.2881 3.5047 2.7437 27 6 5.2939 3.2544 -0.0012 28 6 3.9453 3.0088 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 4.0308 -0.3931 0.0096 35 1 6.4389 0.0624 -0.0022 36 1 7.9174 3.2132 -0.4872 37 1 9.8169 4.7285 -0.2480 38 1 12.7282 5.7945 3.8255 39 1 12.2980 5.8323 5.5525 40 1 12.3509 4.2807 4.6823 41 1 9.2411 7.0974 3.8456 42 1 10.4817 7.4775 5.0637 43 1 10.9122 7.4394 3.3368 44 1 10.0053 3.8007 5.3963 45 1 9.9527 5.3523 6.2664 46 1 8.7115 4.9724 5.0482 47 1 10.3910 2.7380 3.4973 48 1 5.6566 4.2717 -0.0013 49 1 3.2456 3.8315 -0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628694851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 05:59:17 Heat of formation + Delta-G solvation = -31.019365 kcal Electronic energy + Delta-G solvation = -32015.918435 eV Core-core repulsion = 27717.093230 eV Total energy + Delta-G solvation = -4298.825205 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.63754 -40.10437 -39.13670 -37.36668 -36.44943 -34.00341 -32.96374 -32.06457 -30.77185 -29.99214 -29.56819 -28.27814 -27.34849 -27.09517 -25.57578 -24.11480 -22.56117 -22.29880 -21.67886 -20.04515 -19.48247 -18.73449 -18.65666 -17.33787 -16.62472 -16.35753 -15.81679 -15.45522 -15.15861 -14.82962 -14.45585 -14.25097 -14.19717 -13.87178 -13.80824 -13.46751 -13.35067 -13.27511 -13.09368 -12.73903 -12.49525 -12.31721 -12.28572 -12.20725 -12.13352 -12.03420 -11.91320 -11.83521 -11.69537 -11.50568 -11.27018 -11.07568 -10.96444 -10.90595 -10.42272 -10.28632 -10.08132 -9.71804 -9.61039 -9.51764 -8.99113 -8.71347 -8.62320 -7.67329 -7.39260 -6.05816 -5.50749 0.87045 1.68291 2.55113 2.67692 3.03939 3.17647 3.24288 3.39686 3.54955 3.82426 3.99351 4.10745 4.16063 4.50676 4.66361 4.86616 4.87745 4.97101 5.01334 5.03390 5.18107 5.22984 5.43356 5.51944 5.52939 5.54095 5.59052 5.68330 5.70113 5.73730 5.76253 5.79873 5.80639 5.82817 5.87048 6.03331 6.04982 6.05203 6.19545 6.20736 6.26183 6.49674 6.51299 6.54011 6.60059 6.70335 6.82879 6.90283 7.21075 7.43733 7.53558 7.64599 7.87796 8.19560 8.48339 9.18663 9.89459 Molecular weight = 358.17amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.002830 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.720057 B = 9891.533311 C =11139.431729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.172 4.172 3 C 0.402 3.598 4 O -0.470 6.470 5 C -0.219 4.219 6 C -0.049 4.049 7 C -0.148 4.148 8 C 0.208 3.792 9 N -0.686 5.686 10 C 0.489 3.511 11 O -0.512 6.512 12 C 0.069 3.931 13 O -0.812 6.812 14 Si 0.926 3.074 15 H -0.296 1.296 16 H -0.269 1.269 17 H -0.277 1.277 18 C -0.217 4.217 19 C 0.019 3.981 20 N -0.309 5.309 21 N -0.377 5.377 22 C 0.184 3.816 23 C -0.159 4.159 24 C -0.139 4.139 25 C -0.159 4.159 26 C 0.084 3.916 27 C -0.178 4.178 28 C -0.037 4.037 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.405 0.595 37 H 0.172 0.828 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.168 0.832 48 H 0.128 0.872 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 5.939 0.836 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.210 4.210 3 C 0.282 3.718 4 O -0.347 6.347 5 C -0.221 4.221 6 C -0.068 4.068 7 C -0.169 4.169 8 C 0.110 3.890 9 N -0.334 5.334 10 C 0.280 3.720 11 O -0.384 6.384 12 C -0.036 4.036 13 O -0.755 6.755 14 Si 0.754 3.246 15 H -0.225 1.225 16 H -0.193 1.193 17 H -0.203 1.203 18 C -0.229 4.229 19 C -0.167 4.167 20 N -0.130 5.130 21 N -0.162 5.162 22 C 0.100 3.900 23 C -0.217 4.217 24 C -0.196 4.196 25 C -0.217 4.217 26 C -0.060 4.060 27 C -0.199 4.199 28 C -0.056 4.056 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.241 0.759 37 H 0.188 0.812 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.186 0.814 48 H 0.146 0.854 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.762 6.768 1.023 10.349 hybrid contribution 0.159 -0.529 -0.190 0.584 sum -7.603 6.239 0.834 9.871 Atomic orbital electron populations 1.21581 0.93963 1.01515 1.02900 1.21993 0.97988 0.96311 1.04663 1.22353 0.88041 0.90854 0.70569 1.90481 1.58581 1.47826 1.37828 1.20270 0.94383 0.94438 1.13032 1.21153 0.92503 0.98229 0.94925 1.21288 0.95911 0.96725 1.02977 1.18423 0.85018 0.93531 0.92049 1.44702 1.03875 1.32160 1.52680 1.24800 0.90932 0.81854 0.74369 1.90438 1.77295 1.26341 1.44343 1.21777 0.86670 0.91307 1.03885 1.95070 1.67984 1.46909 1.65518 0.86657 0.82172 0.77185 0.78567 1.22549 1.19344 1.20279 1.21419 1.11243 0.96385 0.93835 1.23771 1.02303 0.91703 0.98897 1.77042 1.24686 1.21890 0.89406 1.48713 1.56829 1.04500 1.06195 1.20509 0.95615 0.93695 0.80150 1.22251 0.94465 1.03178 1.01787 1.21855 1.02883 0.92824 1.02052 1.22223 1.00142 1.01888 0.97480 1.22093 1.00478 0.84634 0.98781 1.20809 0.92773 0.98505 1.07813 1.20944 0.94832 0.95903 0.93873 0.92252 0.92259 0.92269 0.88375 0.88410 0.85356 0.83531 0.75857 0.81151 0.91855 0.91091 0.91596 0.91896 0.91658 0.91242 0.91345 0.90756 0.91740 0.81442 0.85400 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.17 -1.69 5.02 -27.88 -0.14 -1.83 16 3 C 0.40 5.39 7.11 -30.83 -0.22 5.17 16 4 O -0.47 -7.46 15.96 5.55 0.09 -7.37 16 5 C -0.22 -3.19 5.87 -105.05 -0.62 -3.81 16 6 C -0.05 -0.72 9.44 -39.32 -0.37 -1.09 16 7 C -0.15 -2.68 8.64 -39.64 -0.34 -3.02 16 8 C 0.21 3.82 6.30 -83.73 -0.53 3.29 16 9 N -0.69 -13.74 4.87 -9.85 -0.05 -13.79 16 10 C 0.49 12.25 5.83 -10.99 -0.06 12.19 16 11 O -0.51 -14.41 13.91 -14.35 -0.20 -14.61 16 12 C 0.07 1.83 0.79 -29.03 -0.02 1.80 16 13 O -0.81 -26.99 16.76 -55.14 -0.92 -27.92 16 14 Si 0.93 21.60 24.62 -169.99 -4.18 17.42 16 15 H -0.30 -5.61 6.77 56.52 0.38 -5.23 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.22 -5.08 4.44 -105.05 -0.47 -5.55 16 19 C 0.02 0.38 10.14 -17.36 -0.18 0.20 16 20 N -0.31 -6.01 11.66 30.63 0.36 -5.65 16 21 N -0.38 -7.06 3.43 -48.66 -0.17 -7.22 16 22 C 0.18 2.61 1.24 -131.82 -0.16 2.45 16 23 C -0.16 -2.01 8.73 37.16 0.32 -1.69 16 24 C -0.14 -1.70 8.09 37.16 0.30 -1.40 16 25 C -0.16 -2.01 8.29 37.15 0.31 -1.70 16 26 C 0.08 1.86 10.02 -17.23 -0.17 1.69 16 27 C -0.18 -2.78 9.92 -39.64 -0.39 -3.17 16 28 C -0.04 -0.54 9.57 -39.32 -0.38 -0.92 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.13 1.47 7.03 -52.49 -0.37 1.10 16 35 H 0.15 2.96 6.21 -52.49 -0.33 2.63 16 36 H 0.41 7.08 7.34 -40.82 -0.30 6.78 16 37 H 0.17 2.90 6.98 -52.49 -0.37 2.53 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 44 H 0.07 0.92 7.37 -51.93 -0.38 0.54 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.17 3.82 7.54 -52.49 -0.40 3.43 16 48 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 49 H 0.13 1.77 7.64 -52.49 -0.40 1.37 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -36.18 404.52 -9.02 -45.20 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.26 Total: 6.22 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.78 Total: 1.63 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.14 Total: -26.66 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -1.04 Total: -49.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.18 Total: 17.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.18 -9.02 -45.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628694851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.181 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds