Wall clock time and date at job start Thu Mar 26 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47064 * 2 1 4 4 O 1.21294 * 120.00353 * 359.97438 * 3 2 1 5 5 C 1.46849 * 119.99732 * 180.02562 * 3 2 1 6 6 C 1.40052 * 120.10132 * 359.72768 * 5 3 2 7 7 C 1.37090 * 119.89607 * 179.72208 * 6 5 3 8 8 C 1.39213 * 120.10066 * 0.52323 * 7 6 5 9 9 N 1.39314 * 119.89839 * 179.74413 * 8 7 6 10 10 C 1.34772 * 120.00135 * 324.85949 * 9 8 7 11 11 O 1.21281 * 120.00094 * 4.58847 * 10 9 8 12 12 C 1.50702 * 120.00315 * 184.58292 * 10 9 8 13 13 O 1.42898 * 109.47592 * 180.02562 * 12 10 9 14 14 Si 1.86299 * 109.47093 * 300.00396 * 12 10 9 15 15 H 1.48498 * 109.47152 * 59.99800 * 14 12 10 16 16 H 1.48505 * 109.47050 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47441 * 299.99534 * 14 12 10 18 18 C 1.50706 * 109.47091 * 60.00350 * 12 10 9 19 19 C 1.39874 * 126.03655 * 274.69659 * 18 12 10 20 20 N 1.30839 * 108.19870 * 179.81392 * 19 18 12 21 21 N 1.40086 * 108.20200 * 0.43832 * 20 19 18 22 22 C 1.46502 * 126.03289 * 179.73985 * 21 20 19 23 23 C 1.53006 * 109.47214 * 254.97444 * 22 21 20 24 24 C 1.53001 * 109.47150 * 14.97023 * 22 21 20 25 25 C 1.52993 * 109.47222 * 134.97335 * 22 21 20 26 26 C 1.34939 * 107.93013 * 359.71621 * 21 20 19 27 27 C 1.39216 * 120.20082 * 359.77122 * 8 7 6 28 28 C 1.37078 * 120.10346 * 359.95344 * 27 8 7 29 29 H 1.08999 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46874 * 299.99932 * 1 2 3 31 31 H 1.08996 * 109.46914 * 59.99803 * 1 2 3 32 32 H 1.09004 * 109.47267 * 119.99673 * 2 1 3 33 33 H 1.08994 * 109.46999 * 239.99516 * 2 1 3 34 34 H 1.08002 * 120.05432 * 359.96964 * 6 5 3 35 35 H 1.07998 * 119.94635 * 180.27689 * 7 6 5 36 36 H 0.96998 * 120.00028 * 144.86043 * 9 8 7 37 37 H 1.07997 * 125.89862 * 359.97438 * 19 18 12 38 38 H 1.08998 * 109.46872 * 59.99537 * 23 22 21 39 39 H 1.08994 * 109.47249 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46890 * 300.00406 * 23 22 21 41 41 H 1.09000 * 109.46858 * 60.00791 * 24 22 21 42 42 H 1.09004 * 109.47037 * 179.97438 * 24 22 21 43 43 H 1.08993 * 109.47531 * 300.00271 * 24 22 21 44 44 H 1.08998 * 109.47102 * 60.00016 * 25 22 21 45 45 H 1.09004 * 109.47441 * 179.97438 * 25 22 21 46 46 H 1.09001 * 109.47332 * 300.00186 * 25 22 21 47 47 H 1.07997 * 126.12719 * 180.02562 * 26 21 20 48 48 H 1.07999 * 119.94458 * 179.97438 * 27 8 7 49 49 H 1.08001 * 120.05263 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4761 1.6891 -0.0006 6 6 4.3881 0.6262 0.0046 7 6 5.7350 0.8814 -0.0017 8 6 6.1967 2.1947 -0.0023 9 7 7.5664 2.4493 -0.0033 10 6 8.4038 1.6342 0.6680 11 8 7.9764 0.6334 1.2034 12 6 9.8713 1.9662 0.7534 13 8 10.5445 0.9586 1.5108 14 14 10.5926 2.0380 -0.9628 15 1 9.8933 3.0848 -1.7503 16 1 12.0386 2.3657 -0.8786 17 1 10.4210 0.7211 -1.6274 18 6 10.0456 3.3026 1.4279 19 6 9.9911 4.5529 0.8033 20 7 10.1842 5.4730 1.7132 21 7 10.3780 4.8358 2.9456 22 6 10.6327 5.4979 4.2274 23 6 12.1086 5.3401 4.5986 24 6 10.2926 6.9850 4.1098 25 6 9.7629 4.8601 5.3126 26 6 10.2881 3.5047 2.7437 27 6 5.2939 3.2544 -0.0012 28 6 3.9453 3.0088 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 4.0308 -0.3931 0.0096 35 1 6.4389 0.0624 -0.0022 36 1 7.9174 3.2132 -0.4872 37 1 9.8169 4.7285 -0.2480 38 1 12.7282 5.7945 3.8255 39 1 12.2980 5.8323 5.5525 40 1 12.3509 4.2807 4.6823 41 1 9.2411 7.0974 3.8456 42 1 10.4817 7.4775 5.0637 43 1 10.9122 7.4394 3.3368 44 1 10.0053 3.8007 5.3963 45 1 9.9527 5.3523 6.2664 46 1 8.7115 4.9724 5.0482 47 1 10.3910 2.7380 3.4973 48 1 5.6566 4.2717 -0.0013 49 1 3.2456 3.8315 -0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000628694851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 05:59:04 Heat of formation + Delta-G solvation = -55.625687 kcal Electronic energy + Delta-G solvation = -32016.985445 eV Core-core repulsion = 27717.093230 eV Total energy + Delta-G solvation = -4299.892215 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 16.77 seconds Orbital eigenvalues (eV) -42.21037 -41.46630 -40.53034 -38.83126 -37.68837 -35.63297 -34.00270 -33.80786 -32.00481 -31.48975 -30.96901 -30.04178 -28.38314 -28.23709 -26.94133 -25.50146 -23.84683 -23.65866 -23.08652 -21.66195 -20.61437 -20.38595 -20.10292 -18.71005 -17.99761 -17.70692 -17.36674 -16.51728 -16.35731 -16.25433 -15.94544 -15.65061 -15.51332 -15.24791 -15.11700 -14.94193 -14.77573 -14.44357 -14.30127 -14.21702 -13.84657 -13.75538 -13.59466 -13.33581 -13.18628 -13.16036 -13.09264 -13.04917 -12.76332 -12.63441 -12.37718 -12.21993 -12.19805 -12.16064 -12.00694 -11.94646 -11.85182 -11.34580 -11.26216 -10.88338 -10.63932 -10.15344 -10.03801 -9.17387 -9.09423 -8.32377 -7.70296 -0.36943 0.42622 1.04812 1.24702 1.32276 1.41795 1.52555 1.66683 1.81406 2.13350 2.33560 2.67540 2.87284 3.09667 3.50858 3.79243 3.80665 3.90965 3.95288 4.08318 4.11313 4.13725 4.28102 4.29627 4.32863 4.44006 4.52209 4.55746 4.56702 4.68811 4.74923 4.77142 4.78455 4.81374 4.83402 4.87508 4.95943 5.01684 5.04697 5.06702 5.07965 5.21444 5.21904 5.30869 5.32016 5.37053 5.38295 5.53610 5.56200 5.89148 6.00130 6.30169 6.54356 6.57862 6.87768 7.35495 7.90250 Molecular weight = 358.17amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.002830 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.720057 B = 9891.533311 C =11139.431729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.170 4.170 3 C 0.404 3.596 4 O -0.495 6.495 5 C -0.214 4.214 6 C -0.037 4.037 7 C -0.169 4.169 8 C 0.176 3.824 9 N -0.672 5.672 10 C 0.490 3.510 11 O -0.561 6.561 12 C 0.023 3.977 13 O -0.896 6.896 14 Si 0.957 3.043 15 H -0.213 1.213 16 H -0.281 1.281 17 H -0.302 1.302 18 C -0.241 4.241 19 C 0.022 3.978 20 N -0.300 5.300 21 N -0.365 5.365 22 C 0.166 3.834 23 C -0.154 4.154 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.067 3.933 27 C -0.165 4.165 28 C -0.041 4.041 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.162 0.838 35 H 0.117 0.883 36 H 0.418 0.582 37 H 0.205 0.795 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.114 0.886 46 H 0.053 0.947 47 H 0.146 0.854 48 H 0.150 0.850 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 8.657 0.155 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.286 3.714 4 O -0.374 6.374 5 C -0.216 4.216 6 C -0.056 4.056 7 C -0.189 4.189 8 C 0.079 3.921 9 N -0.321 5.321 10 C 0.282 3.718 11 O -0.438 6.438 12 C -0.079 4.079 13 O -0.842 6.842 14 Si 0.781 3.219 15 H -0.137 1.137 16 H -0.206 1.206 17 H -0.229 1.229 18 C -0.253 4.253 19 C -0.163 4.163 20 N -0.122 5.122 21 N -0.150 5.150 22 C 0.084 3.916 23 C -0.212 4.212 24 C -0.188 4.188 25 C -0.213 4.213 26 C -0.078 4.078 27 C -0.185 4.185 28 C -0.060 4.060 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.256 0.744 37 H 0.222 0.778 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.132 0.868 46 H 0.072 0.928 47 H 0.163 0.837 48 H 0.168 0.832 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.741 9.585 0.315 13.670 hybrid contribution 0.620 -1.354 0.113 1.493 sum -9.121 8.231 0.429 12.294 Atomic orbital electron populations 1.21592 0.93580 1.02775 1.01970 1.22078 0.98306 0.93791 1.06519 1.22752 0.87023 0.92331 0.69335 1.90483 1.58853 1.49045 1.38972 1.20601 0.95399 0.94335 1.11269 1.21373 0.90889 1.00063 0.93258 1.21216 0.97024 0.96092 1.04603 1.18611 0.84210 0.94556 0.94711 1.44106 1.04459 1.31449 1.52070 1.24329 0.91237 0.81722 0.74477 1.90400 1.78104 1.28476 1.46774 1.22548 0.87328 0.91198 1.06783 1.94975 1.70564 1.49886 1.68796 0.86136 0.81326 0.78321 0.76143 1.13750 1.20641 1.22928 1.21193 1.13221 0.96316 0.94605 1.24069 1.02028 0.89807 1.00415 1.76991 1.23909 1.21720 0.89572 1.49094 1.55228 1.03249 1.07464 1.21114 0.96997 0.94953 0.78508 1.22239 0.93019 1.02339 1.03558 1.21838 1.02016 0.90990 1.03929 1.22226 0.99086 1.01146 0.98832 1.21866 1.01528 0.86001 0.98423 1.20948 0.92548 0.98703 1.06335 1.21212 0.94745 0.96727 0.93312 0.89908 0.93389 0.93056 0.86655 0.86075 0.82061 0.86519 0.74420 0.77847 0.92675 0.87092 0.93539 0.92801 0.87853 0.92026 0.93222 0.86774 0.92825 0.83695 0.83198 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 71.98 0.66 -1.60 16 2 C -0.17 -2.77 5.02 29.85 0.15 -2.62 16 3 C 0.40 9.80 7.11 27.94 0.20 10.00 16 4 O -0.49 -14.68 15.96 -3.07 -0.05 -14.73 16 5 C -0.21 -5.75 5.87 -20.14 -0.12 -5.87 16 6 C -0.04 -1.03 9.44 22.44 0.21 -0.82 16 7 C -0.17 -6.17 8.64 22.23 0.19 -5.97 16 8 C 0.18 6.39 6.30 38.42 0.24 6.63 16 9 N -0.67 -26.97 4.87 -303.46 -1.48 -28.44 16 10 C 0.49 25.68 5.83 87.66 0.51 26.19 16 11 O -0.56 -33.80 13.91 16.00 0.22 -33.57 16 12 C 0.02 1.28 0.79 29.10 0.02 1.30 16 13 O -0.90 -64.12 16.76 -129.94 -2.18 -66.30 16 14 Si 0.96 44.24 24.62 68.60 1.69 45.93 16 15 H -0.21 -6.99 6.77 99.48 0.67 -6.32 16 16 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 18 C -0.24 -11.59 4.44 -20.14 -0.09 -11.68 16 19 C 0.02 0.85 10.14 85.24 0.86 1.72 16 20 N -0.30 -11.27 11.66 -57.02 -0.66 -11.94 16 21 N -0.37 -13.68 3.43 -307.85 -1.06 -14.74 16 22 C 0.17 4.51 1.24 3.60 0.00 4.52 16 23 C -0.15 -3.69 8.73 71.98 0.63 -3.07 16 24 C -0.13 -2.84 8.09 71.98 0.58 -2.26 16 25 C -0.15 -3.78 8.29 71.98 0.60 -3.18 16 26 C 0.07 3.14 10.02 83.54 0.84 3.97 16 27 C -0.16 -4.84 9.92 22.23 0.22 -4.62 16 28 C -0.04 -1.13 9.57 22.44 0.21 -0.92 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 31 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.12 1.56 8.08 -2.38 -0.02 1.54 16 33 H 0.12 1.48 8.09 -2.39 -0.02 1.46 16 34 H 0.16 3.28 7.03 -2.91 -0.02 3.26 16 35 H 0.12 5.01 6.21 -2.91 -0.02 4.99 16 36 H 0.42 13.91 7.34 -92.71 -0.68 13.23 16 37 H 0.21 6.18 6.98 -2.91 -0.02 6.16 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.05 1.39 7.37 -2.39 -0.02 1.37 16 45 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.15 7.31 7.54 -2.91 -0.02 7.28 16 48 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 49 H 0.14 3.56 7.64 -2.91 -0.02 3.54 16 Total: -1.00 -88.12 404.52 3.43 -84.69 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 1.01 Total: 27.38 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.93 Total: 11.73 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -3.20 Total: -55.12 kcal Atomic # 8 Polarization: -112.61 SS G_CDS: -2.00 Total: -114.61 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.69 Total: 45.93 kcal Total: -88.12 3.43 -84.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628694851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.064 kcal (2) G-P(sol) polarization free energy of solvation -88.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.77 seconds