Wall clock time and date at job start Thu Mar 26 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.03887 * 2 1 4 4 C 1.35314 * 107.74893 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.04459 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47570 * 192.11449 * 5 4 3 7 7 Si 1.86305 * 109.46994 * 312.11536 * 5 4 3 8 8 H 1.48504 * 109.46997 * 182.02615 * 7 5 4 9 9 H 1.48502 * 109.47051 * 302.02529 * 7 5 4 10 10 H 1.48496 * 109.47145 * 62.02571 * 7 5 4 11 11 C 1.50707 * 109.47220 * 72.11186 * 5 4 3 12 12 O 1.21276 * 119.99709 * 114.01425 * 11 5 4 13 13 N 1.34780 * 119.99503 * 294.01883 * 11 5 4 14 14 C 1.46507 * 119.99353 * 212.44841 * 13 11 5 15 15 C 1.50700 * 109.46696 * 270.00194 * 14 13 11 16 16 C 1.38248 * 119.97072 * 269.72506 * 15 14 13 17 17 C 1.38206 * 120.02312 * 179.73269 * 16 15 14 18 18 C 1.38456 * 119.96964 * 0.56453 * 17 16 15 19 19 F 1.35105 * 120.02385 * 179.68030 * 18 17 16 20 20 C 1.38457 * 119.95336 * 359.70959 * 18 17 16 21 21 C 1.38198 * 119.97433 * 0.02562 * 20 18 17 22 22 C 1.46492 * 120.00375 * 32.44748 * 13 11 5 23 23 C 1.36910 * 121.97498 * 343.38313 * 10 7 5 24 24 C 1.53001 * 121.63041 * 239.76087 * 23 10 7 25 25 C 1.52996 * 109.47302 * 118.87247 * 24 23 10 26 26 C 1.53006 * 109.46947 * 60.00586 * 25 24 23 27 27 C 1.52996 * 109.46773 * 299.99524 * 26 25 24 28 28 C 1.39879 * 107.91761 * 0.26511 * 4 3 2 29 29 N 1.30835 * 108.20129 * 359.55490 * 28 4 3 30 30 H 1.09004 * 109.47063 * 97.08312 * 1 2 3 31 31 H 1.09000 * 109.47015 * 217.08261 * 1 2 3 32 32 H 1.09002 * 109.46823 * 337.08012 * 1 2 3 33 33 H 1.07998 * 126.12745 * 0.04136 * 3 2 1 34 34 H 1.09002 * 109.46893 * 29.99936 * 14 13 11 35 35 H 1.09000 * 109.46881 * 150.00253 * 14 13 11 36 36 H 1.07998 * 119.98570 * 359.97438 * 16 15 14 37 37 H 1.07991 * 120.01107 * 180.25418 * 17 16 15 38 38 H 1.07997 * 120.01330 * 179.97438 * 20 18 17 39 39 H 1.08002 * 119.98783 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47068 * 167.12012 * 22 13 11 41 41 H 1.08991 * 55.77284 * 146.63294 * 23 10 7 42 42 H 1.09000 * 53.86242 * 331.76731 * 23 10 7 43 43 H 1.09006 * 109.46699 * 358.87175 * 24 23 10 44 44 H 1.09000 * 109.47224 * 238.87845 * 24 23 10 45 45 H 1.09000 * 109.47469 * 300.00448 * 25 24 23 46 46 H 1.09008 * 109.47040 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46877 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.47149 * 59.99665 * 26 25 24 49 49 H 1.08998 * 109.47761 * 300.00366 * 27 26 25 50 50 H 1.09004 * 109.47176 * 180.02562 * 27 26 25 51 51 H 1.07997 * 125.89352 * 179.73479 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5452 -0.0013 6 8 5.9230 0.7527 -0.2845 7 14 4.5851 2.8640 -1.3044 8 1 5.8122 3.6997 -1.3386 9 1 4.3839 2.2256 -2.6300 10 1 3.4134 3.7180 -0.9833 11 6 4.9224 2.1929 1.3507 12 8 5.8698 1.9111 2.0533 13 7 4.0074 3.0851 1.7788 14 6 4.4160 4.1965 2.6416 15 6 4.3118 3.7762 4.0850 16 6 3.1343 3.9799 4.7803 17 6 3.0358 3.5899 6.1025 18 6 4.1206 3.0057 6.7341 19 9 4.0275 2.6299 8.0285 20 6 5.3011 2.8074 6.0383 21 6 5.3956 3.1932 4.7147 22 6 2.6045 2.9437 1.3814 23 6 2.4512 3.3237 -0.0928 24 6 0.9859 3.1759 -0.5077 25 6 0.5425 1.7256 -0.3061 26 6 0.6958 1.3457 1.1682 27 6 2.1610 1.4933 1.5831 28 6 3.5346 -0.7322 -0.0071 29 7 2.2892 -1.1328 -0.0007 30 1 -0.3633 -0.1267 -1.0199 31 1 -0.3633 -0.8198 0.6196 32 1 -0.3633 0.9466 0.4002 33 1 1.9282 2.1193 0.0006 34 1 5.4465 4.4712 2.4166 35 1 3.7648 5.0524 2.4644 36 1 2.2900 4.4403 4.2889 37 1 2.1146 3.7453 6.6443 38 1 6.1481 2.3522 6.5301 39 1 6.3163 3.0383 4.1716 40 1 1.9858 3.6012 1.9922 41 1 2.7671 4.3568 -0.2364 42 1 3.0699 2.6662 -0.7036 43 1 0.8767 3.4466 -1.5579 44 1 0.3673 3.8333 0.1032 45 1 1.1612 1.0681 -0.9169 46 1 -0.5016 1.6205 -0.6013 47 1 0.3794 0.3125 1.3119 48 1 0.0771 2.0031 1.7790 49 1 2.7797 0.8360 0.9722 50 1 2.2703 1.2223 2.6332 51 1 4.4054 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299541981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 06:28:00 Heat of formation + Delta-G solvation = 920.475450 kcal Electronic energy + Delta-G solvation = -39285.981080 eV Core-core repulsion = 34722.106384 eV Total energy + Delta-G solvation = -4563.874696 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 374.179 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.17601 -48.80320 -40.15255 -39.01034 -38.66180 -37.05476 -34.20732 -32.37309 -31.08183 -30.98725 -30.83802 -29.04526 -28.17524 -27.04067 -25.66756 -24.26080 -23.10644 -22.88468 -22.37693 -21.28758 -21.05246 -20.39049 -18.71376 -18.28118 -17.71767 -17.53935 -16.81868 -16.17235 -15.96498 -15.53999 -15.28256 -15.13907 -14.95778 -14.48710 -14.19126 -14.07359 -13.72940 -13.43435 -13.42940 -13.23448 -13.06943 -12.94470 -12.58765 -12.35792 -12.20144 -11.99602 -11.84112 -11.68312 -11.55778 -11.38507 -11.01308 -10.78716 -10.76512 -10.56948 -10.18215 -10.09405 -9.78649 -9.61424 -9.37852 -8.96874 -8.93577 -8.69980 -8.67121 -8.32335 -7.99929 -7.64943 -7.27241 -5.95082 -5.74106 -5.08308 1.24611 1.39233 2.71752 3.06705 3.26622 3.43642 3.48964 3.52558 3.74722 3.93910 4.04764 4.09419 4.36506 4.45614 4.48831 4.61838 4.71752 4.77412 4.81209 4.92277 4.95890 4.98413 5.05982 5.10455 5.27565 5.32762 5.34090 5.43908 5.46254 5.56426 5.62477 5.66551 5.67098 5.76261 5.78351 5.81505 5.85558 5.92808 5.94638 6.08205 6.11781 6.14402 6.20495 6.23485 6.42406 6.44975 6.49369 6.72244 6.91389 7.02997 7.04586 7.33453 7.43563 7.62651 7.80812 8.39375 8.79872 9.42198 10.26153 Molecular weight = 374.18amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.004694 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.048019 B = 5964.221863 C = 6661.798837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.481 5.481 3 C 0.196 3.804 4 C -0.478 4.478 5 C 0.113 3.887 6 O -0.815 6.815 7 Si 0.578 3.422 8 H -0.287 1.287 9 H -0.270 1.270 10 H -0.040 1.040 11 C 0.503 3.497 12 O -0.516 6.516 13 N -0.638 5.638 14 C 0.152 3.848 15 C -0.103 4.103 16 C -0.085 4.085 17 C -0.162 4.162 18 C 0.088 3.912 19 F -0.147 7.147 20 C -0.157 4.157 21 C -0.056 4.056 22 C 0.168 3.832 23 C -0.179 4.179 24 C -0.152 4.152 25 C -0.233 4.233 26 C -0.172 4.172 27 C -0.413 4.413 28 C 0.137 3.863 29 N -0.407 5.407 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.177 0.823 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.182 0.818 46 H 0.083 0.917 47 H 0.133 0.867 48 H 0.058 0.942 49 H 0.360 0.640 50 H 0.103 0.897 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.295 10.698 5.499 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.277 5.277 3 C 0.069 3.931 4 C -0.489 4.489 5 C 0.008 3.992 6 O -0.757 6.757 7 Si 0.410 3.590 8 H -0.214 1.214 9 H -0.196 1.196 10 H 0.027 0.973 11 C 0.296 3.704 12 O -0.387 6.387 13 N -0.377 5.377 14 C 0.029 3.971 15 C -0.105 4.105 16 C -0.104 4.104 17 C -0.181 4.181 18 C 0.069 3.931 19 F -0.126 7.126 20 C -0.175 4.175 21 C -0.074 4.074 22 C 0.063 3.937 23 C -0.215 4.215 24 C -0.190 4.190 25 C -0.271 4.271 26 C -0.209 4.209 27 C -0.443 4.443 28 C -0.047 4.047 29 N -0.225 5.225 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.281 0.719 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.197 0.803 46 H 0.100 0.900 47 H 0.150 0.850 48 H 0.076 0.924 49 H 0.367 0.633 50 H 0.120 0.880 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.395 9.844 5.223 19.824 hybrid contribution 1.186 -0.074 0.900 1.490 sum -15.209 9.770 6.123 19.086 Atomic orbital electron populations 1.24142 0.76550 1.07185 1.01450 1.52482 1.05581 1.03227 1.66428 1.23948 0.90429 1.01648 0.77103 1.21225 0.95073 0.97363 1.35264 1.21287 0.92631 0.96916 0.88316 1.95008 1.33226 1.62826 1.84636 0.94004 0.88988 0.88385 0.87595 1.21408 1.19562 0.97281 1.24743 0.80236 0.75905 0.89526 1.90374 1.33848 1.58717 1.55807 1.48643 1.07530 1.29880 1.51689 1.20352 1.01821 0.89631 0.85284 1.20552 0.93619 0.99341 0.97025 1.20834 0.97306 0.99161 0.93111 1.20995 0.98109 1.02846 0.96169 1.17729 0.95728 1.00869 0.78802 1.91464 1.96821 1.89530 1.34741 1.21181 0.97144 1.03465 0.95757 1.21194 0.99840 0.93729 0.92677 1.21078 0.83893 0.96284 0.92438 1.23018 0.96496 1.02636 0.99305 1.22294 0.94330 0.98458 1.03911 1.26059 1.03727 0.97716 0.99556 1.25068 0.96096 1.05055 0.94655 1.27775 1.01810 1.04905 1.09843 1.23666 0.94018 0.95155 0.91846 1.77217 1.01510 1.09722 1.34020 0.93567 0.91178 0.80700 0.71946 0.89963 0.90305 0.85546 0.85316 0.85067 0.84035 0.89799 0.87290 0.87451 0.89357 0.90123 0.80340 0.89951 0.84987 0.92408 0.63279 0.87984 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 6.44 -7.14 -0.05 0.41 16 2 N -0.48 -8.38 2.14 ******* -2.31 -10.69 16 3 C 0.20 3.61 1.84 -129.50 -0.24 3.37 16 4 C -0.48 -11.76 3.11 -105.05 -0.33 -12.09 16 5 C 0.11 3.20 0.78 -29.03 -0.02 3.18 16 6 O -0.81 -29.73 16.62 -55.07 -0.92 -30.64 16 7 Si 0.58 14.07 23.65 -169.99 -4.02 10.05 16 8 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 9 H -0.27 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.04 -0.65 1.59 -29.72 -0.05 -0.70 16 11 C 0.50 13.00 5.25 -10.98 -0.06 12.94 16 12 O -0.52 -15.15 15.03 -14.28 -0.21 -15.37 16 13 N -0.64 -11.97 2.08 -174.52 -0.36 -12.34 16 14 C 0.15 2.35 5.41 -5.19 -0.03 2.32 16 15 C -0.10 -1.58 5.42 -104.62 -0.57 -2.15 16 16 C -0.09 -1.09 9.70 -39.59 -0.38 -1.47 16 17 C -0.16 -2.10 10.03 -39.51 -0.40 -2.49 16 18 C 0.09 1.29 7.30 -39.42 -0.29 1.00 16 19 F -0.15 -2.16 17.27 2.25 0.04 -2.12 16 20 C -0.16 -2.41 10.03 -39.52 -0.40 -2.81 16 21 C -0.06 -0.94 8.95 -39.59 -0.35 -1.29 16 22 C 0.17 2.51 2.50 -67.93 -0.17 2.34 16 23 C -0.18 -2.46 2.31 -26.73 -0.06 -2.52 16 24 C -0.15 -1.42 5.87 -26.73 -0.16 -1.58 16 25 C -0.23 -2.47 3.12 -104.60 -0.33 -2.80 16 26 C -0.17 -2.04 3.46 -77.78 -0.27 -2.31 16 27 C -0.41 -6.96 4.22 -84.32 -0.36 -7.32 16 28 C 0.14 3.49 11.21 -17.36 -0.19 3.29 16 29 N -0.41 -9.03 12.56 30.63 0.38 -8.65 16 30 H 0.05 0.47 7.59 -51.93 -0.39 0.07 16 31 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16 32 H 0.18 1.44 2.17 -222.41 -0.48 0.96 16 33 H 0.27 3.93 0.00 0.00 0.00 3.93 16 34 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 35 H 0.08 0.87 7.98 -51.93 -0.41 0.46 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.14 2.63 7.13 -52.49 -0.37 2.25 16 40 H 0.08 0.94 7.93 -51.93 -0.41 0.52 16 41 H 0.11 1.22 6.76 -51.93 -0.35 0.87 16 42 H 0.11 1.96 0.42 -51.93 -0.02 1.94 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.18 2.63 3.15 -292.39 -0.92 1.70 16 46 H 0.08 0.56 5.91 -52.34 -0.31 0.25 16 47 H 0.13 1.65 3.63 -161.33 -0.59 1.06 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.36 7.46 0.60 -255.63 -0.15 7.31 16 50 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 51 H 0.17 4.65 7.96 -52.49 -0.42 4.24 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -42.91 345.71 -14.68 -57.59 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -7.85 Total: 16.92 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.64 Total: -9.97 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: -2.29 Total: -31.67 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.13 Total: -46.01 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 14.07 SS G_CDS: -4.02 Total: 10.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -42.91 -14.68 -57.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299541981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 978.067 kcal (2) G-P(sol) polarization free energy of solvation -42.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 935.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 920.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds