Wall clock time and date at job start Thu Mar 26 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.03887 * 2 1 4 4 C 1.35314 * 107.74893 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.04459 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47570 * 192.11449 * 5 4 3 7 7 Si 1.86305 * 109.46994 * 312.11536 * 5 4 3 8 8 H 1.48504 * 109.46997 * 182.02615 * 7 5 4 9 9 H 1.48502 * 109.47051 * 302.02529 * 7 5 4 10 10 H 1.48496 * 109.47145 * 62.02571 * 7 5 4 11 11 C 1.50707 * 109.47220 * 72.11186 * 5 4 3 12 12 O 1.21276 * 119.99709 * 114.01425 * 11 5 4 13 13 N 1.34780 * 119.99503 * 294.01883 * 11 5 4 14 14 C 1.46507 * 119.99353 * 212.44841 * 13 11 5 15 15 C 1.50700 * 109.46696 * 270.00194 * 14 13 11 16 16 C 1.38248 * 119.97072 * 269.72506 * 15 14 13 17 17 C 1.38206 * 120.02312 * 179.73269 * 16 15 14 18 18 C 1.38456 * 119.96964 * 0.56453 * 17 16 15 19 19 F 1.35105 * 120.02385 * 179.68030 * 18 17 16 20 20 C 1.38457 * 119.95336 * 359.70959 * 18 17 16 21 21 C 1.38198 * 119.97433 * 0.02562 * 20 18 17 22 22 C 1.46492 * 120.00375 * 32.44748 * 13 11 5 23 23 C 1.36910 * 121.97498 * 343.38313 * 10 7 5 24 24 C 1.53001 * 121.63041 * 239.76087 * 23 10 7 25 25 C 1.52996 * 109.47302 * 118.87247 * 24 23 10 26 26 C 1.53006 * 109.46947 * 60.00586 * 25 24 23 27 27 C 1.52996 * 109.46773 * 299.99524 * 26 25 24 28 28 C 1.39879 * 107.91761 * 0.26511 * 4 3 2 29 29 N 1.30835 * 108.20129 * 359.55490 * 28 4 3 30 30 H 1.09004 * 109.47063 * 97.08312 * 1 2 3 31 31 H 1.09000 * 109.47015 * 217.08261 * 1 2 3 32 32 H 1.09002 * 109.46823 * 337.08012 * 1 2 3 33 33 H 1.07998 * 126.12745 * 0.04136 * 3 2 1 34 34 H 1.09002 * 109.46893 * 29.99936 * 14 13 11 35 35 H 1.09000 * 109.46881 * 150.00253 * 14 13 11 36 36 H 1.07998 * 119.98570 * 359.97438 * 16 15 14 37 37 H 1.07991 * 120.01107 * 180.25418 * 17 16 15 38 38 H 1.07997 * 120.01330 * 179.97438 * 20 18 17 39 39 H 1.08002 * 119.98783 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47068 * 167.12012 * 22 13 11 41 41 H 1.08991 * 55.77284 * 146.63294 * 23 10 7 42 42 H 1.09000 * 53.86242 * 331.76731 * 23 10 7 43 43 H 1.09006 * 109.46699 * 358.87175 * 24 23 10 44 44 H 1.09000 * 109.47224 * 238.87845 * 24 23 10 45 45 H 1.09000 * 109.47469 * 300.00448 * 25 24 23 46 46 H 1.09008 * 109.47040 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46877 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.47149 * 59.99665 * 26 25 24 49 49 H 1.08998 * 109.47761 * 300.00366 * 27 26 25 50 50 H 1.09004 * 109.47176 * 180.02562 * 27 26 25 51 51 H 1.07997 * 125.89352 * 179.73479 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5452 -0.0013 6 8 5.9230 0.7527 -0.2845 7 14 4.5851 2.8640 -1.3044 8 1 5.8122 3.6997 -1.3386 9 1 4.3839 2.2256 -2.6300 10 1 3.4134 3.7180 -0.9833 11 6 4.9224 2.1929 1.3507 12 8 5.8698 1.9111 2.0533 13 7 4.0074 3.0851 1.7788 14 6 4.4160 4.1965 2.6416 15 6 4.3118 3.7762 4.0850 16 6 3.1343 3.9799 4.7803 17 6 3.0358 3.5899 6.1025 18 6 4.1206 3.0057 6.7341 19 9 4.0275 2.6299 8.0285 20 6 5.3011 2.8074 6.0383 21 6 5.3956 3.1932 4.7147 22 6 2.6045 2.9437 1.3814 23 6 2.4512 3.3237 -0.0928 24 6 0.9859 3.1759 -0.5077 25 6 0.5425 1.7256 -0.3061 26 6 0.6958 1.3457 1.1682 27 6 2.1610 1.4933 1.5831 28 6 3.5346 -0.7322 -0.0071 29 7 2.2892 -1.1328 -0.0007 30 1 -0.3633 -0.1267 -1.0199 31 1 -0.3633 -0.8198 0.6196 32 1 -0.3633 0.9466 0.4002 33 1 1.9282 2.1193 0.0006 34 1 5.4465 4.4712 2.4166 35 1 3.7648 5.0524 2.4644 36 1 2.2900 4.4403 4.2889 37 1 2.1146 3.7453 6.6443 38 1 6.1481 2.3522 6.5301 39 1 6.3163 3.0383 4.1716 40 1 1.9858 3.6012 1.9922 41 1 2.7671 4.3568 -0.2364 42 1 3.0699 2.6662 -0.7036 43 1 0.8767 3.4466 -1.5579 44 1 0.3673 3.8333 0.1032 45 1 1.1612 1.0681 -0.9169 46 1 -0.5016 1.6205 -0.6013 47 1 0.3794 0.3125 1.3119 48 1 0.0771 2.0031 1.7790 49 1 2.7797 0.8360 0.9722 50 1 2.2703 1.2223 2.6332 51 1 4.4054 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299541981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 06:27:59 Heat of formation + Delta-G solvation = 874.148071 kcal Electronic energy + Delta-G solvation = -39287.989986 eV Core-core repulsion = 34722.106384 eV Total energy + Delta-G solvation = -4565.883602 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 374.179 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -51.34490 -49.91774 -41.50140 -40.26086 -39.81549 -38.71789 -35.64926 -33.66926 -32.98128 -32.06507 -32.04055 -30.39387 -29.55851 -28.58118 -26.92573 -25.58730 -24.23902 -23.92372 -23.59766 -22.58975 -22.26869 -21.87029 -19.90584 -19.74075 -19.10576 -18.64736 -18.01289 -17.34606 -17.15854 -16.82550 -16.61121 -16.41172 -16.18334 -15.92757 -15.45125 -15.23102 -14.85985 -14.73837 -14.64377 -14.47077 -14.34595 -14.10101 -13.94000 -13.78887 -13.62444 -13.21663 -13.07399 -13.04687 -12.85328 -12.71540 -12.40768 -12.28878 -12.08232 -11.84852 -11.76668 -11.61672 -11.34270 -10.90916 -10.64881 -10.44575 -10.19903 -10.01058 -9.79407 -9.49510 -9.38588 -9.06663 -8.89061 -8.19832 -7.71470 -7.11181 0.14577 0.33125 1.20444 1.44180 1.46275 1.56458 1.87922 2.08370 2.22974 2.30265 2.81451 2.97219 3.17974 3.30042 3.46180 3.55120 3.67205 3.69087 3.78031 3.83972 3.88515 3.96320 4.02456 4.10633 4.15725 4.23762 4.28673 4.32984 4.42486 4.44365 4.57553 4.67138 4.76097 4.84182 4.86055 4.89327 4.96013 4.99223 5.01833 5.08114 5.10589 5.13139 5.19559 5.20758 5.29226 5.33510 5.36902 5.54709 5.62176 5.66702 5.71103 5.99486 6.02962 6.08610 6.41987 6.69215 7.17277 7.57546 8.26179 Molecular weight = 374.18amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.004694 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.048019 B = 5964.221863 C = 6661.798837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.475 5.475 3 C 0.239 3.761 4 C -0.534 4.534 5 C 0.053 3.947 6 O -0.955 6.955 7 Si 0.362 3.638 8 H -0.363 1.363 9 H -0.343 1.343 10 H 0.317 0.683 11 C 0.502 3.498 12 O -0.592 6.592 13 N -0.624 5.624 14 C 0.145 3.855 15 C -0.115 4.115 16 C -0.058 4.058 17 C -0.149 4.149 18 C 0.074 3.926 19 F -0.151 7.151 20 C -0.181 4.181 21 C -0.093 4.093 22 C 0.166 3.834 23 C -0.251 4.251 24 C -0.135 4.135 25 C -0.248 4.248 26 C -0.174 4.174 27 C -0.408 4.408 28 C 0.067 3.933 29 N -0.436 5.436 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.256 0.744 33 H 0.334 0.666 34 H 0.043 0.957 35 H 0.172 0.828 36 H 0.199 0.801 37 H 0.171 0.829 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.192 0.808 41 H 0.217 0.783 42 H 0.078 0.922 43 H 0.134 0.866 44 H 0.175 0.825 45 H 0.117 0.883 46 H 0.170 0.830 47 H 0.118 0.882 48 H 0.149 0.851 49 H 0.308 0.692 50 H 0.087 0.913 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.882 20.662 7.783 37.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C 0.113 3.887 4 C -0.547 4.547 5 C -0.047 4.047 6 O -0.902 6.902 7 Si 0.239 3.761 8 H -0.296 1.296 9 H -0.274 1.274 10 H 0.351 0.649 11 C 0.295 3.705 12 O -0.470 6.470 13 N -0.361 5.361 14 C 0.024 3.976 15 C -0.116 4.116 16 C -0.076 4.076 17 C -0.168 4.168 18 C 0.054 3.946 19 F -0.130 7.130 20 C -0.200 4.200 21 C -0.112 4.112 22 C 0.064 3.936 23 C -0.283 4.283 24 C -0.172 4.172 25 C -0.286 4.286 26 C -0.211 4.211 27 C -0.440 4.440 28 C -0.114 4.114 29 N -0.256 5.256 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.270 0.730 33 H 0.344 0.656 34 H 0.061 0.939 35 H 0.189 0.811 36 H 0.216 0.784 37 H 0.189 0.811 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.209 0.791 41 H 0.231 0.769 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.193 0.807 45 H 0.133 0.867 46 H 0.187 0.813 47 H 0.135 0.865 48 H 0.166 0.834 49 H 0.317 0.683 50 H 0.105 0.895 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -30.907 19.651 7.485 37.382 hybrid contribution 5.745 -3.404 0.337 6.687 sum -25.162 16.246 7.822 30.955 Atomic orbital electron populations 1.25185 0.72233 1.11574 1.03236 1.53257 1.07213 1.00832 1.65959 1.25115 0.86551 1.03738 0.73317 1.21099 0.98002 0.95640 1.39965 1.22283 0.91319 0.99333 0.91742 1.94857 1.39173 1.67894 1.88268 0.99675 1.00831 0.93745 0.81871 1.29589 1.27432 0.64924 1.24109 0.80738 0.77116 0.88512 1.90333 1.37447 1.61923 1.57309 1.48190 1.08184 1.28523 1.51207 1.20825 1.02375 0.90165 0.84215 1.20699 0.94109 0.99415 0.97410 1.21440 0.97090 0.96761 0.92321 1.21536 0.98135 1.00383 0.96713 1.17989 0.96149 1.01649 0.78771 1.91452 1.96808 1.89721 1.35021 1.21158 0.98349 1.04728 0.95805 1.21058 1.00031 0.96729 0.93377 1.21728 0.81800 0.96424 0.93664 1.22580 1.01404 1.05536 0.98769 1.22530 0.88132 0.97527 1.08974 1.25607 1.07813 0.97991 0.97168 1.24982 0.92059 1.07031 0.96992 1.26944 1.05346 1.05019 1.06741 1.23036 0.94006 0.96691 0.97653 1.76907 1.00134 1.13714 1.34867 0.92067 0.91563 0.73021 0.65566 0.93872 0.81051 0.78373 0.81130 0.86353 0.89118 0.79120 0.76882 0.90566 0.84823 0.80699 0.86694 0.81329 0.86464 0.83398 0.68331 0.89503 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 6.44 84.37 0.54 0.63 16 2 N -0.48 -15.44 2.14 ******* -7.63 -23.07 16 3 C 0.24 7.95 1.84 10.81 0.02 7.97 16 4 C -0.53 -29.34 3.11 -20.14 -0.06 -29.40 16 5 C 0.05 3.44 0.78 29.10 0.02 3.46 16 6 O -0.95 -85.96 16.62 -130.01 -2.16 -88.12 16 7 Si 0.36 18.90 23.65 68.60 1.62 20.52 16 8 H -0.36 -23.55 7.11 99.48 0.71 -22.85 16 9 H -0.34 -21.75 7.11 99.48 0.71 -21.05 16 10 H 0.32 6.50 1.59 18.47 0.03 6.53 16 11 C 0.50 28.36 5.25 87.66 0.46 28.82 16 12 O -0.59 -40.78 15.03 15.95 0.24 -40.54 16 13 N -0.62 -20.33 2.08 -824.46 -1.71 -22.05 16 14 C 0.15 3.56 5.41 85.63 0.46 4.02 16 15 C -0.11 -2.99 5.42 -19.86 -0.11 -3.09 16 16 C -0.06 -0.89 9.70 22.26 0.22 -0.67 16 17 C -0.15 -2.72 10.03 22.31 0.22 -2.50 16 18 C 0.07 2.00 7.30 22.37 0.16 2.17 16 19 F -0.15 -4.21 17.27 44.97 0.78 -3.44 16 20 C -0.18 -5.99 10.03 22.31 0.22 -5.77 16 21 C -0.09 -3.35 8.95 22.26 0.20 -3.16 16 22 C 0.17 2.81 2.50 45.00 0.11 2.92 16 23 C -0.25 -3.01 2.31 30.60 0.07 -2.94 16 24 C -0.13 0.26 5.87 30.59 0.18 0.44 16 25 C -0.25 -1.57 3.12 -17.53 -0.05 -1.62 16 26 C -0.17 -1.78 3.46 2.43 0.01 -1.77 16 27 C -0.41 -10.69 4.22 -6.71 -0.03 -10.72 16 28 C 0.07 4.17 11.21 85.24 0.96 5.13 16 29 N -0.44 -21.89 12.56 -57.02 -0.72 -22.61 16 30 H 0.06 0.74 7.59 -2.39 -0.02 0.72 16 31 H 0.07 1.07 7.74 -2.39 -0.02 1.05 16 32 H 0.26 0.30 2.17 -162.53 -0.35 -0.06 16 33 H 0.33 6.04 0.00 0.00 0.00 6.04 16 34 H 0.04 1.40 7.92 -2.39 -0.02 1.38 16 35 H 0.17 1.20 7.98 -2.39 -0.02 1.18 16 36 H 0.20 0.33 8.06 -2.91 -0.02 0.30 16 37 H 0.17 1.80 8.06 -2.92 -0.02 1.78 16 38 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.09 4.09 7.13 -2.91 -0.02 4.06 16 40 H 0.19 -0.08 7.93 -2.39 -0.02 -0.10 16 41 H 0.22 -0.12 6.76 -2.39 -0.02 -0.14 16 42 H 0.08 2.28 0.42 -2.39 0.00 2.27 16 43 H 0.13 -0.81 8.14 -2.38 -0.02 -0.83 16 44 H 0.18 -2.68 8.14 -2.39 -0.02 -2.70 16 45 H 0.12 2.43 3.15 -287.90 -0.91 1.52 16 46 H 0.17 -0.90 5.91 -2.77 -0.02 -0.92 16 47 H 0.12 1.79 3.63 -115.06 -0.42 1.37 16 48 H 0.15 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.31 12.67 0.60 -193.73 -0.12 12.55 16 50 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 51 H 0.10 7.04 7.96 -2.91 -0.02 7.02 16 Total: -1.00 -173.52 345.71 -6.65 -180.17 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -0.67 Total: 5.19 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 3.61 Total: -6.06 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -10.07 Total: -67.73 kcal Atomic # 8 Polarization: -126.74 SS G_CDS: -1.92 Total: -128.66 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: 1.62 Total: 20.52 kcal Total: -173.52 -6.65 -180.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299541981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1054.317 kcal (2) G-P(sol) polarization free energy of solvation -173.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 880.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -180.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 874.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds