Wall clock time and date at job start Thu Mar 26 2020 09:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47036 * 210.00096 * 6 5 4 8 8 Si 1.86298 * 109.47228 * 330.00200 * 6 5 4 9 9 H 1.48499 * 109.47281 * 59.99227 * 8 6 5 10 10 H 1.48498 * 109.47312 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46727 * 299.99891 * 8 6 5 12 12 C 1.50702 * 109.46901 * 90.00181 * 6 5 4 13 13 O 1.21277 * 120.00186 * 125.00587 * 12 6 5 14 14 N 1.34776 * 120.00024 * 304.99830 * 12 6 5 15 15 C 1.46500 * 120.00123 * 180.02562 * 14 12 6 16 16 H 1.09000 * 109.47145 * 324.99937 * 15 14 12 17 17 C 1.50707 * 109.46986 * 204.99897 * 15 14 12 18 18 C 1.38380 * 119.92299 * 320.00139 * 17 15 14 19 19 C 1.38343 * 120.30495 * 179.97438 * 18 17 15 20 20 C 1.37976 * 120.14808 * 359.97361 * 19 18 17 21 21 C 1.39611 * 119.84512 * 0.02562 * 20 19 18 22 22 C 1.43205 * 120.14973 * 179.97438 * 21 20 19 23 23 N 9.25296 * 103.10644 * 84.25298 * 2 1 3 24 24 C 1.37921 * 119.91819 * 139.72581 * 17 15 14 25 25 C 1.53003 * 109.46874 * 84.99946 * 15 14 12 26 26 F 1.39904 * 109.47254 * 60.00238 * 25 15 14 27 27 F 1.39904 * 109.46897 * 179.97438 * 25 15 14 28 28 F 1.39894 * 109.47282 * 299.99661 * 25 15 14 29 29 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 30 30 C 1.38234 * 120.00047 * 359.95697 * 29 5 4 31 31 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 32 32 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 33 33 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 34 34 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 36 36 H 0.97001 * 119.99883 * 0.02562 * 14 12 6 37 37 H 1.08002 * 119.85162 * 359.97438 * 18 17 15 38 38 H 1.07996 * 119.92992 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.07454 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.08412 * 359.97438 * 24 17 15 41 41 H 1.08001 * 119.99658 * 179.97438 * 29 5 4 42 42 H 1.07999 * 119.99990 * 180.02562 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 8 6.2575 -1.1655 -0.6624 8 14 6.4030 1.5227 -0.8611 9 1 5.9053 2.7339 -0.1606 10 1 7.8880 1.5230 -0.8549 11 1 5.9133 1.5255 -2.2630 12 6 6.2756 -0.0029 1.4345 13 8 7.0443 -0.8640 1.8066 14 7 5.8658 0.9515 2.2933 15 6 6.3493 0.9491 3.6762 16 1 6.4694 -0.0792 4.0173 17 6 5.3533 1.6577 4.5578 18 6 4.7245 2.8045 4.1057 19 6 3.8086 3.4610 4.9082 20 6 3.5156 2.9751 6.1659 21 6 4.1462 1.8186 6.6282 22 6 3.8474 1.3089 7.9327 23 7 3.6051 0.9024 8.9666 24 6 5.0664 1.1583 5.8110 25 6 7.6967 1.6705 3.7466 26 9 7.5425 2.9903 3.3089 27 9 8.1581 1.6687 5.0674 28 9 8.6212 1.0127 2.9283 29 6 3.5805 -1.1972 0.0000 30 6 2.1981 -1.1972 -0.0054 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1325 0.0004 35 1 4.1205 2.1324 0.0104 36 1 5.2507 1.6400 1.9958 37 1 4.9499 3.1889 3.1219 38 1 3.3218 4.3558 4.5494 39 1 2.8000 3.4883 6.7911 40 1 5.5542 0.2605 6.1608 41 1 4.1205 -2.1325 -0.0002 42 1 1.6581 -2.1325 -0.0097 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596069643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 09:46:48 Heat of formation + Delta-G solvation = -187.658390 kcal Electronic energy + Delta-G solvation = -35369.626913 eV Core-core repulsion = 30249.916083 eV Total energy + Delta-G solvation = -5119.710830 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.103 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.15134 -48.65522 -48.63108 -41.24258 -40.40674 -39.62499 -37.69302 -36.25544 -34.95151 -32.70014 -32.34113 -32.05969 -31.56476 -29.55962 -27.96082 -25.68538 -25.19661 -24.30143 -23.36808 -22.79601 -21.97774 -20.87708 -20.00252 -19.56222 -19.34615 -18.67498 -17.97914 -17.30304 -16.93361 -16.82835 -16.37164 -16.08151 -15.72634 -15.53675 -15.48715 -15.31527 -15.19592 -15.11881 -15.05074 -14.95480 -14.79212 -14.75426 -14.59720 -14.24999 -14.23741 -14.14403 -14.01422 -13.80508 -13.73117 -13.49744 -13.04358 -12.96976 -12.70208 -12.55500 -12.32418 -12.23305 -12.15185 -12.00810 -11.71077 -11.32760 -10.97042 -10.40218 -10.03375 -9.99432 -9.64884 -9.17650 -8.38075 -7.79648 -0.29371 0.13637 0.58960 0.70166 1.18066 1.25841 1.42224 1.52891 1.59174 1.84756 1.93966 2.10866 2.50853 2.64341 2.74336 2.88832 2.94239 3.07755 3.23515 3.52031 3.76163 3.98263 4.09974 4.13042 4.17194 4.19857 4.34546 4.42447 4.50567 4.64924 4.67050 4.72847 4.86941 4.88662 5.00270 5.04932 5.14554 5.17323 5.22198 5.28223 5.37612 5.40526 5.47579 5.72261 5.75645 5.86373 6.09561 6.36360 6.39261 6.47143 7.30781 7.83820 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.007830 B = 0.004602 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.048487 B = 6083.254603 C = 8227.514049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.106 4.106 3 C -0.104 4.104 4 C -0.154 4.154 5 C -0.092 4.092 6 C -0.020 4.020 7 O -0.895 6.895 8 Si 0.944 3.056 9 H -0.200 1.200 10 H -0.311 1.311 11 H -0.272 1.272 12 C 0.493 3.507 13 O -0.567 6.567 14 N -0.717 5.717 15 C 0.148 3.852 16 H 0.120 0.880 17 C -0.121 4.121 18 C -0.069 4.069 19 C -0.098 4.098 20 C -0.040 4.040 21 C -0.037 4.037 22 C 0.280 3.720 23 N -0.461 5.461 24 C -0.045 4.045 25 C 0.435 3.565 26 F -0.173 7.173 27 F -0.174 7.174 28 F -0.193 7.193 29 C -0.117 4.117 30 C -0.129 4.129 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.415 0.585 37 H 0.144 0.856 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.074 0.926 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 16.606 9.896 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.122 4.122 4 C -0.172 4.172 5 C -0.093 4.093 6 C -0.120 4.120 7 O -0.842 6.842 8 Si 0.768 3.232 9 H -0.124 1.124 10 H -0.239 1.239 11 H -0.197 1.197 12 C 0.284 3.716 13 O -0.444 6.444 14 N -0.377 5.377 15 C 0.039 3.961 16 H 0.138 0.862 17 C -0.122 4.122 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.060 4.060 21 C -0.040 4.040 22 C -0.034 4.034 23 N -0.137 5.137 24 C -0.066 4.066 25 C 0.379 3.621 26 F -0.154 7.154 27 F -0.155 7.155 28 F -0.174 7.174 29 C -0.135 4.135 30 C -0.147 4.147 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.254 0.746 37 H 0.161 0.839 38 H 0.198 0.802 39 H 0.186 0.814 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.422 15.807 11.169 22.998 hybrid contribution 1.372 -1.189 -0.674 1.937 sum -11.050 14.618 10.495 21.117 Atomic orbital electron populations 1.20754 0.88478 1.03715 1.02891 1.20232 0.97674 0.92366 1.00311 1.21298 0.92700 0.98772 0.99398 1.21362 0.95780 0.96732 1.03310 1.21006 0.96806 0.94208 0.97314 1.23369 0.91758 1.07502 0.89398 1.95003 1.83353 1.35116 1.70683 0.86361 0.78049 0.76466 0.82283 1.12428 1.23882 1.19699 1.23923 0.79126 0.78978 0.89571 1.90452 1.36641 1.38801 1.78473 1.46418 1.50384 1.32576 1.08320 1.20719 0.88315 1.01250 0.85792 0.86249 1.19140 1.00095 0.98330 0.94647 1.21570 0.94026 0.92344 1.00900 1.21459 0.96513 1.00998 0.92576 1.21673 0.96274 0.91852 0.96241 1.15881 1.02172 0.98820 0.87167 1.25832 0.92448 0.92518 0.92614 1.81333 1.09963 1.09457 1.12966 1.20990 0.94890 0.98928 0.91841 1.21341 0.88973 0.78152 0.73609 1.93147 1.95743 1.37002 1.89540 1.93170 1.90419 1.96420 1.35507 1.93241 1.69541 1.81135 1.73489 1.20877 0.94514 0.97802 1.00355 1.21203 0.92579 0.99183 1.01701 0.90658 0.91501 0.89397 0.81809 0.84195 0.74560 0.83877 0.80162 0.81448 0.84520 0.90746 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 10.01 71.23 0.71 -1.09 16 2 C -0.11 -2.92 5.88 -19.87 -0.12 -3.04 16 3 C -0.10 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.15 -5.19 7.64 22.27 0.17 -5.02 16 5 C -0.09 -4.29 4.39 -19.86 -0.09 -4.38 16 6 C -0.02 -1.12 0.70 29.10 0.02 -1.10 16 7 O -0.90 -65.87 16.19 -129.99 -2.10 -67.98 16 8 Si 0.94 44.23 24.29 68.60 1.67 45.90 16 9 H -0.20 -6.36 6.38 99.48 0.63 -5.72 16 10 H -0.31 -16.38 7.11 99.48 0.71 -15.67 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 12 C 0.49 25.62 5.48 87.66 0.48 26.10 16 13 O -0.57 -34.67 15.08 15.97 0.24 -34.43 16 14 N -0.72 -26.63 4.48 -446.09 -2.00 -28.63 16 15 C 0.15 4.62 2.29 44.25 0.10 4.72 16 16 H 0.12 4.09 7.43 -2.39 -0.02 4.08 16 17 C -0.12 -2.63 4.63 -19.90 -0.09 -2.73 16 18 C -0.07 -1.08 8.29 22.33 0.19 -0.90 16 19 C -0.10 -0.85 10.03 22.23 0.22 -0.62 16 20 C -0.04 -0.38 9.76 22.54 0.22 -0.16 16 21 C -0.04 -0.58 5.73 -21.36 -0.12 -0.70 16 22 C 0.28 5.58 15.33 88.32 1.35 6.94 16 23 N -0.46 -11.61 18.54 19.02 0.35 -11.26 16 24 C -0.05 -0.88 9.37 22.54 0.21 -0.67 16 25 C 0.44 14.20 2.82 71.98 0.20 14.40 16 26 F -0.17 -4.96 16.18 44.97 0.73 -4.24 16 27 F -0.17 -5.04 17.02 44.97 0.77 -4.28 16 28 F -0.19 -8.13 15.68 44.97 0.71 -7.42 16 29 C -0.12 -5.57 9.35 22.27 0.21 -5.36 16 30 C -0.13 -4.59 9.70 22.27 0.22 -4.38 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 33 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.14 3.89 5.26 -2.91 -0.02 3.88 16 36 H 0.41 12.54 5.11 -92.71 -0.47 12.07 16 37 H 0.14 2.00 6.77 -2.91 -0.02 1.98 16 38 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.14 2.59 8.03 -2.91 -0.02 2.57 16 41 H 0.07 4.22 7.48 -2.91 -0.02 4.20 16 42 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -92.72 375.79 5.78 -86.93 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.33 Total: 5.89 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 4.10 Total: 19.52 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -1.65 Total: -39.89 kcal Atomic # 8 Polarization: -100.55 SS G_CDS: -1.86 Total: -102.41 kcal Atomic # 9 Polarization: -18.13 SS G_CDS: 2.20 Total: -15.94 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.90 kcal Total: -92.72 5.78 -86.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596069643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.724 kcal (2) G-P(sol) polarization free energy of solvation -92.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds