Wall clock time and date at job start Thu Mar 26 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99825 * 2 1 4 4 C 1.38243 * 120.00070 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.07188 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47047 * 29.99988 * 6 5 4 8 8 Si 1.86296 * 109.47249 * 150.00011 * 6 5 4 9 9 H 1.48500 * 109.47022 * 59.99779 * 8 6 5 10 10 H 1.48499 * 109.47269 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47147 * 300.00095 * 8 6 5 12 12 C 1.50694 * 109.47132 * 270.00352 * 6 5 4 13 13 O 1.21285 * 120.00596 * 125.00357 * 12 6 5 14 14 N 1.34774 * 120.00022 * 304.99505 * 12 6 5 15 15 C 1.38955 * 120.00528 * 180.02562 * 14 12 6 16 16 N 1.29651 * 125.30978 * 180.02562 * 15 14 12 17 17 C 1.32565 * 117.00655 * 179.97438 * 16 15 14 18 18 C 1.48330 * 122.31116 * 180.02562 * 17 16 15 19 19 C 1.39497 * 120.05159 * 184.97863 * 18 17 16 20 20 C 1.38115 * 120.17730 * 180.02562 * 19 18 17 21 21 C 1.38055 * 120.28517 * 359.97438 * 20 19 18 22 22 C 1.39677 * 120.10253 * 0.02562 * 21 20 19 23 23 C 1.43206 * 120.09022 * 180.02562 * 22 21 20 24 24 N 9.96502 * 100.50555 * 229.74796 * 2 1 3 25 25 C 1.39110 * 120.04802 * 4.71127 * 18 17 16 26 26 C 1.34508 * 115.37692 * 0.02562 * 17 16 15 27 27 S 1.76104 * 125.30277 * 359.69558 * 15 14 12 28 28 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 29 29 C 1.38234 * 120.00292 * 180.13138 * 2 1 3 30 30 H 1.09002 * 109.47284 * 269.86794 * 1 2 3 31 31 H 1.08996 * 109.47210 * 29.86582 * 1 2 3 32 32 H 1.09002 * 109.47150 * 149.86798 * 1 2 3 33 33 H 1.08001 * 120.00367 * 0.10906 * 3 2 1 34 34 H 1.08000 * 119.99728 * 180.34119 * 4 3 2 35 35 H 0.97000 * 119.99821 * 0.02562 * 14 12 6 36 36 H 1.07995 * 119.91420 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.85558 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.94893 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.14369 * 359.97338 * 25 18 17 40 40 H 1.08004 * 125.88570 * 180.02562 * 26 17 16 41 41 H 1.08001 * 120.00350 * 179.97438 * 28 5 4 42 42 H 1.08007 * 119.99474 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0026 6 6 5.7787 0.0000 -0.0037 7 8 6.2555 1.1660 0.6710 8 14 6.4004 -1.5221 0.8721 9 1 5.9048 -2.7338 0.1709 10 1 7.8854 -1.5218 0.8715 11 1 5.9065 -1.5239 2.2726 12 6 6.2799 0.0019 -1.4249 13 8 7.0498 0.8627 -1.7954 14 7 5.8728 -0.9531 -2.2843 15 6 6.3353 -0.9518 -3.5946 16 7 6.0119 -1.8171 -4.5043 17 6 6.5518 -1.6589 -5.7047 18 6 6.2631 -2.5793 -6.8315 19 6 6.9357 -2.4310 -8.0445 20 6 6.6686 -3.2862 -9.0956 21 6 5.7353 -4.2935 -8.9536 22 6 5.0548 -4.4527 -7.7442 23 6 4.0872 -5.4981 -7.5970 24 7 3.3239 -6.3310 -7.4779 25 6 5.3252 -3.5952 -6.6783 26 6 7.3794 -0.6060 -5.8303 27 16 7.4457 0.2304 -4.2807 28 6 3.5806 -1.1971 -0.0035 29 6 2.1982 -1.1971 -0.0027 30 1 -0.3634 -0.0024 1.0277 31 1 -0.3633 0.8911 -0.5117 32 1 -0.3633 -0.8888 -0.5159 33 1 1.6581 2.1325 0.0018 34 1 4.1205 2.1325 0.0050 35 1 5.2568 -1.6414 -1.9881 36 1 7.6668 -1.6448 -8.1624 37 1 7.1927 -3.1670 -10.0323 38 1 5.5309 -4.9595 -9.7789 39 1 4.8056 -3.7165 -5.7393 40 1 7.9077 -0.3195 -6.7277 41 1 4.1206 -2.1324 -0.0055 42 1 1.6582 -2.1325 -0.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161134800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 05:17:11 Heat of formation + Delta-G solvation = 34.842556 kcal Electronic energy + Delta-G solvation = -29972.764275 eV Core-core repulsion = 25781.885510 eV Total energy + Delta-G solvation = -4190.878765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 378.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21635 -39.56659 -38.67835 -38.15621 -36.55678 -34.30644 -33.44958 -31.96359 -31.46335 -30.52027 -30.15536 -28.79171 -26.76799 -25.36211 -24.15173 -23.44754 -22.39178 -22.00033 -20.81164 -20.47155 -19.46387 -18.16294 -17.53858 -16.69617 -16.40895 -16.18998 -15.51350 -15.17750 -15.03907 -14.80859 -14.75972 -14.37517 -14.21087 -14.04071 -13.72561 -13.46492 -13.42149 -13.39352 -12.98181 -12.93531 -12.82073 -12.73778 -12.50201 -12.06094 -11.98879 -11.97080 -11.50727 -11.43320 -11.07689 -10.72267 -10.64189 -10.53605 -10.46136 -10.07663 -9.75577 -9.47901 -9.38565 -9.25686 -9.23028 -8.78425 -8.25394 -7.77588 -7.64376 -6.33228 -5.80405 0.41838 0.76920 1.30754 1.44273 1.97117 2.09756 2.16981 2.47918 2.55364 2.97117 3.07578 3.11800 3.25784 3.31385 3.57418 3.65031 3.82144 4.18538 4.36362 4.51844 4.60191 4.74782 4.87898 5.12071 5.29399 5.31451 5.35509 5.40026 5.45075 5.61080 5.70381 5.76302 5.82439 5.88142 5.99621 6.01619 6.06846 6.10484 6.15710 6.23421 6.30561 6.42436 6.50916 6.70975 6.74957 6.79878 7.11215 7.23083 7.28183 7.49023 7.55836 7.75623 8.11386 8.70787 9.54426 Molecular weight = 378.08amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.002864 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.524121 B = 9773.822876 C =11533.591017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.076 4.076 5 C -0.072 4.072 6 C 0.031 3.969 7 O -0.796 6.796 8 Si 0.933 3.067 9 H -0.290 1.290 10 H -0.272 1.272 11 H -0.260 1.260 12 C 0.484 3.516 13 O -0.490 6.490 14 N -0.631 5.631 15 C 0.304 3.696 16 N -0.525 5.525 17 C 0.120 3.880 18 C -0.006 4.006 19 C -0.077 4.077 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.033 4.033 23 C 0.258 3.742 24 N -0.421 5.421 25 C -0.041 4.041 26 C -0.314 4.314 27 S 0.198 5.802 28 C -0.154 4.154 29 C -0.121 4.121 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.418 0.582 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.119 0.881 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -5.868 -14.806 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.146 4.146 4 C -0.094 4.094 5 C -0.073 4.073 6 C -0.073 4.073 7 O -0.738 6.738 8 Si 0.759 3.241 9 H -0.219 1.219 10 H -0.198 1.198 11 H -0.184 1.184 12 C 0.274 3.726 13 O -0.361 6.361 14 N -0.286 5.286 15 C -0.066 4.066 16 N -0.249 5.249 17 C -0.011 4.011 18 C -0.009 4.009 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.094 4.094 22 C -0.036 4.036 23 C -0.057 4.057 24 N -0.096 5.096 25 C -0.062 4.062 26 C -0.455 4.455 27 S 0.449 5.551 28 C -0.172 4.172 29 C -0.139 4.139 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.258 0.742 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.190 0.810 41 H 0.136 0.864 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.062 -6.376 -13.528 15.097 hybrid contribution -0.344 -0.456 -0.737 0.932 sum -2.405 -6.832 -14.265 15.999 Atomic orbital electron populations 1.20687 0.92099 1.01926 1.01525 1.19739 0.95270 0.93505 1.02814 1.21047 0.94515 0.96836 1.02196 1.21100 0.92539 0.99449 0.96327 1.21288 0.98606 0.92420 0.94992 1.22674 0.89259 1.08178 0.87173 1.95130 1.81172 1.30468 1.66994 0.86493 0.80419 0.74282 0.82880 1.21871 1.19763 1.18420 1.25317 0.79957 0.77980 0.89355 1.90405 1.33987 1.35648 1.76091 1.44408 1.46852 1.32336 1.05005 1.24494 0.96853 0.94326 0.90888 1.66285 1.29784 1.28422 1.00388 1.17987 0.97223 0.95481 0.90419 1.18039 0.96660 0.94400 0.91792 1.21409 0.98052 0.98576 0.91627 1.20954 0.98403 0.95190 0.99233 1.21191 0.94847 0.97755 0.95607 1.15929 0.97081 0.94492 0.96138 1.25692 0.93210 0.93079 0.93706 1.81248 1.10323 1.10560 1.07445 1.21374 0.95307 0.91633 0.97919 1.27213 1.09534 1.03314 1.05449 1.86154 1.43096 1.26939 0.98880 1.21245 0.94478 0.98035 1.03461 1.20794 0.93924 0.96886 1.02281 0.91944 0.92192 0.92203 0.87009 0.85187 0.74237 0.84861 0.84650 0.85056 0.83854 0.81018 0.86363 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 2 C -0.11 -1.88 5.88 -104.63 -0.62 -2.49 16 3 C -0.13 -2.34 9.70 -39.58 -0.38 -2.73 16 4 C -0.08 -1.70 9.35 -39.58 -0.37 -2.07 16 5 C -0.07 -1.64 4.39 -104.63 -0.46 -2.10 16 6 C 0.03 0.81 0.70 -29.04 -0.02 0.79 16 7 O -0.80 -25.76 16.19 -55.09 -0.89 -26.65 16 8 Si 0.93 21.42 24.29 -169.99 -4.13 17.29 16 9 H -0.29 -5.53 6.38 56.52 0.36 -5.17 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.48 11.85 5.91 -10.99 -0.06 11.79 16 13 O -0.49 -13.14 14.02 -14.31 -0.20 -13.34 16 14 N -0.63 -12.92 4.94 -11.84 -0.06 -12.98 16 15 C 0.30 5.77 8.39 -87.37 -0.73 5.04 16 16 N -0.52 -9.00 9.90 -10.41 -0.10 -9.11 16 17 C 0.12 1.75 6.60 -84.72 -0.56 1.19 16 18 C -0.01 -0.07 5.87 -104.95 -0.62 -0.69 16 19 C -0.08 -0.64 9.46 -39.16 -0.37 -1.01 16 20 C -0.12 -0.79 10.02 -39.69 -0.40 -1.18 16 21 C -0.07 -0.54 9.75 -39.11 -0.38 -0.92 16 22 C -0.03 -0.32 5.73 -106.98 -0.61 -0.94 16 23 C 0.26 2.99 15.32 -22.47 -0.34 2.65 16 24 N -0.42 -5.78 18.54 41.84 0.78 -5.01 16 25 C -0.04 -0.47 9.33 -38.81 -0.36 -0.83 16 26 C -0.31 -4.23 10.57 29.41 0.31 -3.92 16 27 S 0.20 3.45 20.54 -107.50 -2.21 1.24 16 28 C -0.15 -2.97 7.64 -39.59 -0.30 -3.27 16 29 C -0.12 -2.04 9.70 -39.58 -0.38 -2.42 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.13 3.17 7.48 -52.49 -0.39 2.78 16 35 H 0.42 7.73 7.07 -40.82 -0.29 7.44 16 36 H 0.13 0.85 6.60 -52.49 -0.35 0.51 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 1.79 7.67 -52.49 -0.40 1.38 16 40 H 0.17 1.66 6.82 -52.48 -0.36 1.30 16 41 H 0.12 2.08 5.26 -52.49 -0.28 1.81 16 42 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -33.72 380.77 -11.24 -44.95 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.85 Total: 1.94 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -6.30 Total: -4.08 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.61 Total: -27.09 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.09 Total: -40.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.13 Total: 17.29 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.21 Total: 1.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.72 -11.24 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161134800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds