Wall clock time and date at job start Thu Mar 26 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99825 * 2 1 4 4 C 1.38243 * 120.00070 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.07188 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47047 * 29.99988 * 6 5 4 8 8 Si 1.86296 * 109.47249 * 150.00011 * 6 5 4 9 9 H 1.48500 * 109.47022 * 59.99779 * 8 6 5 10 10 H 1.48499 * 109.47269 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47147 * 300.00095 * 8 6 5 12 12 C 1.50694 * 109.47132 * 270.00352 * 6 5 4 13 13 O 1.21285 * 120.00596 * 125.00357 * 12 6 5 14 14 N 1.34774 * 120.00022 * 304.99505 * 12 6 5 15 15 C 1.38955 * 120.00528 * 180.02562 * 14 12 6 16 16 N 1.29651 * 125.30978 * 180.02562 * 15 14 12 17 17 C 1.32565 * 117.00655 * 179.97438 * 16 15 14 18 18 C 1.48330 * 122.31116 * 180.02562 * 17 16 15 19 19 C 1.39497 * 120.05159 * 184.97863 * 18 17 16 20 20 C 1.38115 * 120.17730 * 180.02562 * 19 18 17 21 21 C 1.38055 * 120.28517 * 359.97438 * 20 19 18 22 22 C 1.39677 * 120.10253 * 0.02562 * 21 20 19 23 23 C 1.43206 * 120.09022 * 180.02562 * 22 21 20 24 24 N 9.96502 * 100.50555 * 229.74796 * 2 1 3 25 25 C 1.39110 * 120.04802 * 4.71127 * 18 17 16 26 26 C 1.34508 * 115.37692 * 0.02562 * 17 16 15 27 27 S 1.76104 * 125.30277 * 359.69558 * 15 14 12 28 28 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 29 29 C 1.38234 * 120.00292 * 180.13138 * 2 1 3 30 30 H 1.09002 * 109.47284 * 269.86794 * 1 2 3 31 31 H 1.08996 * 109.47210 * 29.86582 * 1 2 3 32 32 H 1.09002 * 109.47150 * 149.86798 * 1 2 3 33 33 H 1.08001 * 120.00367 * 0.10906 * 3 2 1 34 34 H 1.08000 * 119.99728 * 180.34119 * 4 3 2 35 35 H 0.97000 * 119.99821 * 0.02562 * 14 12 6 36 36 H 1.07995 * 119.91420 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.85558 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.94893 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.14369 * 359.97338 * 25 18 17 40 40 H 1.08004 * 125.88570 * 180.02562 * 26 17 16 41 41 H 1.08001 * 120.00350 * 179.97438 * 28 5 4 42 42 H 1.08007 * 119.99474 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0026 6 6 5.7787 0.0000 -0.0037 7 8 6.2555 1.1660 0.6710 8 14 6.4004 -1.5221 0.8721 9 1 5.9048 -2.7338 0.1709 10 1 7.8854 -1.5218 0.8715 11 1 5.9065 -1.5239 2.2726 12 6 6.2799 0.0019 -1.4249 13 8 7.0498 0.8627 -1.7954 14 7 5.8728 -0.9531 -2.2843 15 6 6.3353 -0.9518 -3.5946 16 7 6.0119 -1.8171 -4.5043 17 6 6.5518 -1.6589 -5.7047 18 6 6.2631 -2.5793 -6.8315 19 6 6.9357 -2.4310 -8.0445 20 6 6.6686 -3.2862 -9.0956 21 6 5.7353 -4.2935 -8.9536 22 6 5.0548 -4.4527 -7.7442 23 6 4.0872 -5.4981 -7.5970 24 7 3.3239 -6.3310 -7.4779 25 6 5.3252 -3.5952 -6.6783 26 6 7.3794 -0.6060 -5.8303 27 16 7.4457 0.2304 -4.2807 28 6 3.5806 -1.1971 -0.0035 29 6 2.1982 -1.1971 -0.0027 30 1 -0.3634 -0.0024 1.0277 31 1 -0.3633 0.8911 -0.5117 32 1 -0.3633 -0.8888 -0.5159 33 1 1.6581 2.1325 0.0018 34 1 4.1205 2.1325 0.0050 35 1 5.2568 -1.6414 -1.9881 36 1 7.6668 -1.6448 -8.1624 37 1 7.1927 -3.1670 -10.0323 38 1 5.5309 -4.9595 -9.7789 39 1 4.8056 -3.7165 -5.7393 40 1 7.9077 -0.3195 -6.7277 41 1 4.1206 -2.1324 -0.0055 42 1 1.6582 -2.1325 -0.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161134800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 05:17:10 Heat of formation + Delta-G solvation = 13.739776 kcal Electronic energy + Delta-G solvation = -29973.679361 eV Core-core repulsion = 25781.885510 eV Total energy + Delta-G solvation = -4191.793850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 378.082 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51884 -40.89893 -39.98134 -39.50227 -37.50271 -35.92237 -35.02473 -32.93156 -32.19788 -32.18879 -31.68817 -29.95355 -28.34690 -26.61786 -25.35901 -24.36657 -23.53455 -23.46175 -22.35907 -21.78488 -20.78667 -19.41529 -18.79608 -18.00203 -17.68390 -17.24652 -17.13798 -16.55169 -16.21021 -16.00717 -15.85169 -15.80277 -15.44453 -15.22157 -14.90905 -14.85497 -14.64882 -14.38727 -14.35480 -14.24339 -13.96621 -13.86294 -13.67545 -13.35852 -13.07850 -13.00476 -12.69404 -12.41012 -12.34096 -12.25646 -12.14169 -12.08685 -12.00856 -11.82445 -11.43211 -11.05203 -10.82847 -10.47206 -10.03603 -9.92553 -9.75898 -9.30875 -8.87845 -8.53764 -7.94684 -0.47171 -0.14271 0.08528 0.26896 0.47555 0.58571 0.93190 1.13540 1.22541 1.36159 1.53888 1.58321 1.73159 1.83855 2.17899 2.39827 2.83753 2.96087 3.00406 3.30987 3.93820 4.00738 4.01946 4.09333 4.20350 4.22788 4.28674 4.33567 4.37347 4.45655 4.58137 4.60310 4.66816 4.73860 4.89420 4.91783 4.95050 5.02820 5.04900 5.17113 5.26573 5.36618 5.37647 5.38770 5.49573 5.60371 5.75541 5.86070 5.91968 6.01308 6.24854 6.41159 6.72018 6.92506 7.60044 Molecular weight = 378.08amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.002864 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.524121 B = 9773.822876 C =11533.591017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.105 4.105 3 C -0.127 4.127 4 C -0.113 4.113 5 C -0.099 4.099 6 C -0.013 4.013 7 O -0.880 6.880 8 Si 0.959 3.041 9 H -0.219 1.219 10 H -0.297 1.297 11 H -0.264 1.264 12 C 0.486 3.514 13 O -0.532 6.532 14 N -0.624 5.624 15 C 0.271 3.729 16 N -0.517 5.517 17 C 0.105 3.895 18 C -0.031 4.031 19 C -0.064 4.064 20 C -0.106 4.106 21 C -0.055 4.055 22 C -0.044 4.044 23 C 0.279 3.721 24 N -0.466 5.466 25 C -0.053 4.053 26 C -0.276 4.276 27 S 0.151 5.849 28 C -0.157 4.157 29 C -0.112 4.112 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.425 0.575 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.219 0.781 41 H 0.137 0.863 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -8.981 -18.786 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.131 4.131 5 C -0.100 4.100 6 C -0.114 4.114 7 O -0.825 6.825 8 Si 0.781 3.219 9 H -0.144 1.144 10 H -0.224 1.224 11 H -0.188 1.188 12 C 0.276 3.724 13 O -0.407 6.407 14 N -0.278 5.278 15 C -0.098 4.098 16 N -0.241 5.241 17 C -0.025 4.025 18 C -0.034 4.034 19 C -0.084 4.084 20 C -0.123 4.123 21 C -0.075 4.075 22 C -0.047 4.047 23 C -0.036 4.036 24 N -0.142 5.142 25 C -0.075 4.075 26 C -0.416 4.416 27 S 0.401 5.599 28 C -0.175 4.175 29 C -0.130 4.130 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.266 0.734 36 H 0.177 0.823 37 H 0.195 0.805 38 H 0.178 0.822 39 H 0.140 0.860 40 H 0.236 0.764 41 H 0.154 0.846 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.761 -9.565 -17.579 20.363 hybrid contribution 0.129 0.483 0.227 0.549 sum -3.632 -9.082 -17.353 19.920 Atomic orbital electron populations 1.20766 0.88351 1.03674 1.03104 1.20276 0.97843 0.92389 1.00011 1.21255 0.92697 0.99139 1.01361 1.20949 0.94536 0.97909 0.99747 1.21000 0.96894 0.94151 0.97983 1.23416 0.91612 1.08407 0.87932 1.95027 1.83177 1.34606 1.69696 0.86077 0.78495 0.75036 0.82246 1.14404 1.22378 1.18847 1.24755 0.79607 0.78329 0.89678 1.90374 1.35819 1.37366 1.77105 1.43727 1.46880 1.31622 1.05616 1.24483 0.98809 0.95877 0.90634 1.66291 1.29159 1.27518 1.01111 1.18531 0.97181 0.96549 0.90235 1.18009 0.98579 0.94664 0.92146 1.21750 0.97207 0.99056 0.90345 1.21406 0.97360 0.93464 1.00074 1.21603 0.93322 0.97704 0.94911 1.15944 0.97661 0.94126 0.97001 1.25965 0.92593 0.92582 0.92414 1.81263 1.11885 1.12184 1.08873 1.21207 0.95863 0.92600 0.97782 1.27530 1.08417 1.01287 1.04381 1.86298 1.43454 1.28226 1.01941 1.21379 0.95852 0.96959 1.03281 1.21294 0.92916 0.98874 0.99866 0.90252 0.91047 0.89982 0.84828 0.89694 0.73406 0.82299 0.80495 0.82246 0.86044 0.76426 0.84585 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.01 71.24 0.71 -1.40 16 2 C -0.11 -3.22 5.88 -19.87 -0.12 -3.34 16 3 C -0.13 -4.69 9.70 22.27 0.22 -4.48 16 4 C -0.11 -5.46 9.35 22.27 0.21 -5.25 16 5 C -0.10 -4.77 4.39 -19.87 -0.09 -4.86 16 6 C -0.01 -0.74 0.70 29.10 0.02 -0.72 16 7 O -0.88 -62.67 16.19 -129.99 -2.10 -64.77 16 8 Si 0.96 44.83 24.29 68.60 1.67 46.50 16 9 H -0.22 -7.68 6.38 99.48 0.63 -7.04 16 10 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 11 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.49 25.58 5.91 87.66 0.52 26.10 16 13 O -0.53 -31.16 14.02 15.94 0.22 -30.93 16 14 N -0.62 -26.63 4.94 -309.75 -1.53 -28.16 16 15 C 0.27 10.59 8.39 179.21 1.50 12.10 16 16 N -0.52 -17.65 9.90 -186.84 -1.85 -19.50 16 17 C 0.10 2.87 6.60 40.87 0.27 3.14 16 18 C -0.03 -0.63 5.87 -20.08 -0.12 -0.75 16 19 C -0.06 -0.74 9.46 22.54 0.21 -0.52 16 20 C -0.11 -0.73 10.02 22.20 0.22 -0.51 16 21 C -0.05 -0.53 9.75 22.57 0.22 -0.31 16 22 C -0.04 -0.74 5.73 -21.39 -0.12 -0.87 16 23 C 0.28 6.02 15.32 88.33 1.35 7.37 16 24 N -0.47 -12.41 18.54 19.01 0.35 -12.06 16 25 C -0.05 -1.12 9.33 22.77 0.21 -0.91 16 26 C -0.28 -6.83 10.57 66.97 0.71 -6.12 16 27 S 0.15 5.41 20.54 -56.49 -1.16 4.25 16 28 C -0.16 -5.91 7.64 22.27 0.17 -5.74 16 29 C -0.11 -3.44 9.70 22.27 0.22 -3.22 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 32 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.08 4.74 7.48 -2.91 -0.02 4.72 16 35 H 0.43 15.99 7.07 -92.71 -0.66 15.33 16 36 H 0.16 1.00 6.60 -2.91 -0.02 0.98 16 37 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 38 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.12 3.03 7.67 -2.91 -0.02 3.01 16 40 H 0.22 3.18 6.82 -2.91 -0.02 3.16 16 41 H 0.14 4.47 5.26 -2.91 -0.02 4.46 16 42 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -86.98 380.77 3.06 -83.92 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.14 Total: 11.05 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.32 Total: 9.72 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -3.03 Total: -59.72 kcal Atomic # 8 Polarization: -93.82 SS G_CDS: -1.88 Total: -95.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.50 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.16 Total: 4.25 kcal Total: -86.98 3.06 -83.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161134800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.656 kcal (2) G-P(sol) polarization free energy of solvation -86.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds