Wall clock time and date at job start Thu Mar 26 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21287 * 1 3 3 N 1.34773 * 120.00206 * 2 1 4 4 C 1.40124 * 120.00059 * 354.46409 * 3 2 1 5 5 C 1.38720 * 120.08928 * 335.20191 * 4 3 2 6 6 C 1.38200 * 119.98330 * 180.02562 * 5 4 3 7 Xx 1.81006 * 119.91566 * 180.02562 * 6 5 4 8 7 F 6.65050 * 41.00268 * 327.38378 * 2 1 3 9 8 F 1.60997 * 89.99977 * 134.99754 * 7 6 5 10 9 F 1.61000 * 89.99702 * 314.99656 * 7 6 5 11 10 F 1.61000 * 89.99766 * 224.99858 * 7 6 5 12 11 F 1.60993 * 90.00066 * 44.99473 * 7 6 5 13 12 C 1.38271 * 120.16463 * 359.97342 * 6 5 4 14 13 C 1.38245 * 120.18061 * 0.02832 * 13 6 5 15 14 C 1.38551 * 120.01302 * 359.71916 * 14 13 6 16 15 O 1.35977 * 120.08188 * 180.02562 * 15 14 13 17 16 C 1.50703 * 119.99818 * 179.72107 * 2 1 3 18 17 O 1.42901 * 109.46975 * 359.97438 * 17 2 1 19 18 Si 1.86298 * 109.47184 * 120.00160 * 17 2 1 20 19 H 1.48500 * 109.47266 * 59.99785 * 19 17 2 21 20 H 1.48500 * 109.47182 * 180.02562 * 19 17 2 22 21 H 1.48501 * 109.47000 * 299.99771 * 19 17 2 23 22 C 1.53006 * 109.47100 * 240.00242 * 17 2 1 24 23 C 1.52992 * 117.50112 * 116.37747 * 23 17 2 25 24 C 1.53000 * 60.00227 * 107.48618 * 24 23 17 26 25 H 0.97006 * 120.00177 * 174.47481 * 3 2 1 27 26 H 1.08005 * 120.00926 * 359.97438 * 5 4 3 28 27 H 1.08002 * 119.90903 * 179.97438 * 13 6 5 29 28 H 1.07999 * 119.98889 * 179.97438 * 14 13 6 30 29 H 0.96696 * 114.00229 * 89.99807 * 16 15 14 31 30 H 1.09006 * 115.54547 * 330.66752 * 23 17 2 32 31 H 1.09004 * 117.49959 * 214.97924 * 24 23 17 33 32 H 1.08998 * 117.50055 * 359.97438 * 24 23 17 34 33 H 1.08996 * 117.49934 * 252.51089 * 25 24 23 35 34 H 1.09006 * 117.49750 * 107.48691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2129 0.0000 0.0000 3 7 1.8868 1.1671 0.0000 4 6 1.1911 2.3779 -0.1171 5 6 -0.0535 2.4085 -0.7288 6 6 -0.7375 3.6038 -0.8435 7 9 -3.8061 3.6753 -2.3519 8 9 -2.9225 4.5752 -0.4558 9 9 -1.8009 2.7079 -2.8271 10 9 -1.9254 4.9527 -2.4676 11 9 -2.7980 2.3304 -0.8154 12 6 -0.1846 4.7709 -0.3494 13 6 1.0554 4.7482 0.2615 14 6 1.7452 3.5530 0.3852 15 8 2.9647 3.5290 0.9862 16 6 1.9663 -1.3051 0.0064 17 8 1.0377 -2.3912 0.0122 18 14 3.0374 -1.4113 -1.5142 19 1 4.0025 -0.2826 -1.5198 20 1 3.7794 -2.6976 -1.5083 21 1 2.1837 -1.3385 -2.7271 22 6 2.8460 -1.3802 1.2561 23 6 2.5374 -2.4816 2.2721 24 6 3.7830 -2.5823 1.3892 25 1 2.8535 1.1691 0.0809 26 1 -0.4876 1.4984 -1.1160 27 1 -0.7225 5.7028 -0.4417 28 1 1.4845 5.6617 0.6460 29 1 2.9298 3.3792 1.9409 30 1 3.1971 -0.4230 1.6418 31 1 2.6854 -2.2493 3.3267 32 1 1.7075 -3.1526 2.0505 33 1 3.7727 -3.3198 0.5867 34 1 4.7505 -2.4162 1.8631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182668109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 06:32:03 Heat of formation + Delta-G solvation = 256.958694 kcal Electronic energy + Delta-G solvation = -29310.000603 eV Core-core repulsion = 24070.526186 eV Total energy + Delta-G solvation = -5239.474417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.072 amu Computer time = 17.04 seconds Orbital eigenvalues (eV) -43.22518 -41.55861 -41.13698 -40.16657 -40.07648 -40.02292 -39.99398 -39.80983 -37.70480 -37.22828 -36.65611 -32.37254 -30.79024 -29.32655 -25.10508 -23.87026 -23.61730 -23.25040 -21.91843 -20.38334 -19.44220 -19.04825 -18.27878 -17.64870 -17.25954 -17.05075 -16.72144 -16.28013 -15.86601 -15.15615 -14.95390 -14.90902 -14.55383 -14.10489 -13.95250 -13.58470 -13.05392 -12.82660 -12.63481 -12.44668 -12.11827 -12.05537 -12.00225 -11.90996 -11.82592 -11.58997 -11.06405 -10.91910 -10.72029 -10.67814 -10.39978 -10.26206 -10.11523 -10.00416 -9.87074 -9.60714 -9.45116 -9.18847 -8.60170 -8.48752 -4.94402 -2.76551 -1.10298 -0.97868 -0.53158 -0.11861 0.22171 0.37639 0.90287 0.96761 1.43308 1.61665 1.78243 2.01726 2.19905 2.37687 2.76785 3.05613 3.34123 3.45848 3.53591 3.68394 3.76306 3.80943 4.37407 4.42450 4.54002 4.62348 4.66756 4.82615 4.87672 5.04647 5.20155 5.30512 5.55808 6.04838 6.76670 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.004469 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.624585 B = 6263.330606 C = 7063.253058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.452 6.452 2 C 0.513 3.487 3 N -0.582 5.582 4 C 0.147 3.853 5 C -0.159 4.159 6 C 0.426 3.574 7 F -0.291 7.291 8 F -0.590 7.590 9 F -0.601 7.601 10 F -0.587 7.587 11 F -0.584 7.584 12 C -0.144 4.144 13 C -0.061 4.061 14 C 0.139 3.861 15 O -0.446 6.446 16 C -0.041 4.041 17 O -0.115 6.115 18 Si 1.071 2.929 19 H -0.016 1.016 20 H -0.095 1.095 21 H -0.263 1.263 22 C -0.191 4.191 23 C -0.148 4.148 24 C -0.107 4.107 25 H 0.465 0.535 26 H 0.135 0.865 27 H 0.124 0.876 28 H 0.224 0.776 29 H 0.427 0.573 30 H 0.228 0.772 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 55.572 -31.234 20.913 67.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.322 6.322 2 C 0.292 3.708 3 N -0.238 5.238 4 C 0.052 3.948 5 C -0.179 4.179 6 C 0.415 3.585 7 F -0.291 7.291 8 F -0.586 7.586 9 F -0.599 7.599 10 F -0.585 7.585 11 F -0.582 7.582 12 C -0.163 4.163 13 C -0.079 4.079 14 C 0.091 3.909 15 O -0.260 6.260 16 C -0.140 4.140 17 O -0.023 6.023 18 Si 0.848 3.152 19 H 0.060 0.940 20 H -0.014 1.014 21 H -0.187 1.187 22 C -0.210 4.210 23 C -0.185 4.185 24 C -0.143 4.143 25 H 0.314 0.686 26 H 0.152 0.848 27 H 0.142 0.858 28 H 0.241 0.759 29 H 0.290 0.710 30 H 0.245 0.755 31 H 0.169 0.831 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 54.920 -31.682 19.908 66.455 hybrid contribution -4.451 0.034 -0.420 4.471 sum 50.469 -31.648 19.488 62.678 Atomic orbital electron populations 1.91307 1.15324 1.79582 1.45996 1.19966 0.86898 0.84290 0.79601 1.42474 1.12399 0.99429 1.69516 1.16790 0.89295 0.86789 1.01878 1.21087 0.95572 0.98310 1.02900 1.24618 0.52087 0.95028 0.86733 1.99918 1.34359 1.95145 1.99672 1.99882 1.85633 1.86730 1.86368 1.99873 1.78175 1.89606 1.92198 1.99895 1.78507 1.93729 1.86348 1.99891 1.93190 1.66989 1.98088 1.21785 0.97369 0.97881 0.99282 1.21650 0.87317 1.02097 0.96808 1.17213 0.87790 0.87585 0.98305 1.84823 1.18291 1.94060 1.28858 1.30998 0.94527 0.89660 0.98856 1.95165 1.42084 1.42641 1.22360 0.90137 0.71758 0.97905 0.55421 0.93964 1.01367 1.18727 1.24437 1.07582 1.05037 0.83970 1.24031 1.02172 0.94040 0.98265 1.24299 0.97043 0.90251 1.02679 0.68599 0.84800 0.85760 0.75931 0.71024 0.75537 0.83060 0.88576 0.84016 0.80139 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 590. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.45 -15.69 13.67 15.98 0.22 -15.47 16 2 C 0.51 6.30 5.80 87.66 0.51 6.81 16 3 N -0.58 -4.24 4.64 -303.14 -1.41 -5.64 16 4 C 0.15 4.05 6.45 38.19 0.25 4.30 16 5 C -0.16 -9.04 7.29 22.38 0.16 -8.88 16 6 C 0.43 32.39 4.82 22.27 0.11 32.50 16 7 F -0.29 -35.44 16.66 44.97 0.75 -34.69 16 8 F -0.59 -66.36 15.30 44.97 0.69 -65.67 16 9 F -0.60 -66.62 15.30 44.97 0.69 -65.93 16 10 F -0.59 -65.73 15.30 44.97 0.69 -65.04 16 11 F -0.58 -65.27 15.31 44.97 0.69 -64.58 16 12 C -0.14 -8.48 8.61 22.28 0.19 -8.28 16 13 C -0.06 -1.86 9.98 22.35 0.22 -1.64 16 14 C 0.14 2.69 6.72 22.60 0.15 2.84 16 15 O -0.45 -0.39 12.92 -93.29 -1.21 -1.60 16 16 C -0.04 0.20 0.72 29.85 0.02 0.22 16 17 O -0.11 -0.39 15.56 -129.94 -2.02 -2.41 16 18 Si 1.07 -15.77 24.97 68.60 1.71 -14.05 16 19 H -0.02 0.44 7.11 99.48 0.71 1.15 16 20 H -0.09 2.42 6.67 99.48 0.66 3.08 16 21 H -0.26 0.12 7.11 99.48 0.71 0.83 16 22 C -0.19 3.40 4.65 -10.79 -0.05 3.35 16 23 C -0.15 2.17 9.86 30.59 0.30 2.48 16 24 C -0.11 2.56 9.25 30.59 0.28 2.84 16 25 H 0.47 -5.22 7.23 -92.70 -0.67 -5.89 16 26 H 0.13 8.96 5.12 -2.91 -0.01 8.94 16 27 H 0.12 8.46 7.38 -2.91 -0.02 8.43 16 28 H 0.22 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.43 -4.57 9.06 -74.06 -0.67 -5.24 16 30 H 0.23 -5.97 7.51 -2.38 -0.02 -5.98 16 31 H 0.15 -2.52 8.14 -2.38 -0.02 -2.54 16 32 H 0.10 -0.81 7.02 -2.39 -0.02 -0.83 16 33 H 0.14 -3.71 6.97 -2.39 -0.02 -3.72 16 34 H 0.18 -5.45 8.14 -2.38 -0.02 -5.47 16 Total: -1.00 -305.41 319.30 3.53 -301.88 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: 0.59 Total: -3.32 kcal Atomic # 6 Polarization: 34.38 SS G_CDS: 2.15 Total: 36.53 kcal Atomic # 7 Polarization: -4.24 SS G_CDS: -1.41 Total: -5.64 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -3.01 Total: -19.48 kcal Atomic # 9 Polarization: -299.41 SS G_CDS: 3.50 Total: -295.91 kcal Atomic # 14 Polarization: -15.77 SS G_CDS: 1.71 Total: -14.05 kcal Total: -305.41 3.53 -301.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182668109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 558.839 kcal (2) G-P(sol) polarization free energy of solvation -305.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 253.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -301.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 256.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.04 seconds