Wall clock time and date at job start Thu Mar 26 2020 09:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46792 * 300.00326 * 4 3 2 6 6 Si 1.86300 * 109.46920 * 59.99915 * 4 3 2 7 7 H 1.48503 * 109.47069 * 60.00399 * 6 4 3 8 8 H 1.48506 * 109.46781 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47164 * 300.00045 * 6 4 3 10 10 C 1.50699 * 109.47240 * 180.02562 * 4 3 2 11 11 O 1.21286 * 119.99722 * 124.99987 * 10 4 3 12 12 N 1.34770 * 119.99873 * 304.99900 * 10 4 3 13 13 C 1.46500 * 119.99792 * 180.02562 * 12 10 4 14 14 C 1.50695 * 109.47249 * 180.02562 * 13 12 10 15 15 C 1.38234 * 120.00237 * 270.27478 * 14 13 12 16 16 C 1.38240 * 120.00397 * 179.97438 * 15 14 13 17 17 C 1.38226 * 119.99521 * 359.97438 * 16 15 14 18 Xx 1.81004 * 119.99749 * 179.97438 * 17 16 15 19 18 F 9.08554 * 105.26015 * 216.30204 * 7 1 2 20 19 F 1.60992 * 90.00216 * 134.99762 * 18 17 16 21 20 F 1.61005 * 89.99821 * 314.99549 * 18 17 16 22 21 F 1.60996 * 90.00094 * 224.99812 * 18 17 16 23 22 F 1.61002 * 90.00183 * 44.99736 * 18 17 16 24 23 C 1.38236 * 120.00507 * 359.95288 * 17 16 15 25 24 C 1.38230 * 120.00000 * 359.86294 * 24 17 16 26 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 29 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 32 H 0.96994 * 120.00181 * 0.02562 * 12 10 4 34 33 H 1.09000 * 109.47293 * 299.99830 * 13 12 10 35 34 H 1.09000 * 109.47626 * 59.99999 * 13 12 10 36 35 H 1.08000 * 119.99654 * 359.97438 * 15 14 13 37 36 H 1.07995 * 119.99773 * 179.97438 * 16 15 14 38 37 H 1.08001 * 120.00070 * 180.02562 * 24 17 16 39 38 H 1.08000 * 120.00331 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0458 0.7691 1.1677 6 14 4.1916 0.5642 -1.5201 7 1 3.6971 1.2641 -2.7329 8 1 5.6767 0.5638 -1.5191 9 1 3.6967 -0.8359 -1.5201 10 6 4.0723 2.8635 0.0013 11 8 4.8420 3.2341 0.8622 12 7 3.6661 3.7222 -0.9547 13 6 4.1548 5.1032 -0.9544 14 6 3.5538 5.8490 -2.1178 15 6 4.1996 5.8595 -3.3400 16 6 3.6481 6.5432 -4.4075 17 6 2.4506 7.2159 -4.2527 18 9 1.0905 8.9073 -6.8962 19 9 0.2852 7.4884 -5.3042 20 9 3.1723 8.7352 -5.9961 21 9 1.4187 9.3642 -4.6872 22 9 2.0387 6.8593 -6.6132 23 6 1.8040 7.2043 -3.0310 24 6 2.3535 6.5175 -1.9647 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.0502 3.4258 -1.6430 33 1 3.8664 5.5905 -0.0230 34 1 5.2411 5.1043 -1.0438 35 1 5.1351 5.3334 -3.4610 36 1 4.1529 6.5516 -5.3621 37 1 0.8681 7.7297 -2.9103 38 1 1.8486 6.5087 -1.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144043522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 09:50:32 Heat of formation + Delta-G solvation = 265.548266 kcal Electronic energy + Delta-G solvation = -28387.656334 eV Core-core repulsion = 23284.387484 eV Total energy + Delta-G solvation = -5103.268850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.104 amu Computer time = 18.88 seconds Orbital eigenvalues (eV) -44.31743 -44.17652 -44.12004 -44.02675 -43.46685 -41.34036 -40.07050 -36.30195 -35.89889 -32.86560 -32.78591 -32.20418 -28.68770 -27.05122 -24.41510 -24.31772 -22.53456 -21.89286 -20.50724 -18.10026 -17.30251 -17.21905 -16.57340 -16.30495 -16.21987 -15.72105 -15.23492 -15.19486 -15.11242 -15.06389 -14.74865 -14.68104 -14.43776 -14.33304 -14.12251 -14.09874 -14.07969 -13.93220 -13.83800 -13.63945 -13.56034 -13.54819 -13.34710 -13.09252 -12.94464 -12.70768 -12.47406 -12.24113 -12.20443 -11.86766 -11.80485 -11.57432 -11.49419 -11.33068 -11.03909 -10.83216 -10.73482 -10.39856 -9.88143 -8.12471 -7.61274 -5.19080 -4.73545 -3.09395 -0.79391 -0.39281 1.38194 1.46090 1.54743 1.81384 2.07796 2.62797 2.75777 2.87403 3.05864 3.22191 3.39204 3.61533 4.16569 4.25343 4.33964 4.35026 4.42938 4.46675 4.54233 4.64757 4.70308 4.89957 4.98069 5.02804 5.04461 5.05597 5.17089 5.32267 5.48133 5.63052 5.69279 5.77806 6.81118 7.59194 8.09705 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003012 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.742764 B = 9294.511305 C = 9767.827044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.052 4.052 5 O -0.913 6.913 6 Si 0.942 3.058 7 H -0.213 1.213 8 H -0.317 1.317 9 H -0.282 1.282 10 C 0.486 3.514 11 O -0.592 6.592 12 N -0.729 5.729 13 C 0.151 3.849 14 C -0.074 4.074 15 C -0.025 4.025 16 C -0.107 4.107 17 C 0.333 3.667 18 F -0.220 7.220 19 F -0.160 7.160 20 F -0.160 7.160 21 F -0.162 7.162 22 F -0.158 7.158 23 C -0.105 4.105 24 C -0.020 4.020 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.410 0.590 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.188 0.812 37 H 0.190 0.810 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 11.492 -10.006 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.153 4.153 5 O -0.860 6.860 6 Si 0.769 3.231 7 H -0.137 1.137 8 H -0.245 1.245 9 H -0.208 1.208 10 C 0.277 3.723 11 O -0.472 6.472 12 N -0.388 5.388 13 C 0.029 3.971 14 C -0.074 4.074 15 C -0.043 4.043 16 C -0.124 4.124 17 C 0.328 3.672 18 F -0.220 7.220 19 F -0.158 7.158 20 F -0.158 7.158 21 F -0.161 7.161 22 F -0.157 7.157 23 C -0.123 4.123 24 C -0.038 4.038 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.247 0.753 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.222 0.778 36 H 0.205 0.795 37 H 0.207 0.793 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.800 11.177 -9.825 15.359 hybrid contribution -0.514 0.585 -0.726 1.065 sum -4.313 11.762 -10.551 16.379 Atomic orbital electron populations 1.21730 0.93576 1.01928 1.02369 1.21461 0.96889 0.97465 1.00421 1.21891 0.96603 0.96480 1.00187 1.24374 0.95219 0.89688 1.06025 1.94984 1.84378 1.71321 1.35293 0.86389 0.77533 0.82208 0.77016 1.13720 1.24499 1.20787 1.23852 0.79466 0.89749 0.79245 1.90430 1.37848 1.79139 1.39735 1.46364 1.50522 1.10305 1.31598 1.20268 0.99743 0.81593 0.95528 1.20476 0.94989 0.96587 0.95389 1.21699 1.01120 0.94778 0.86698 1.21946 0.91251 0.95260 1.03931 1.27879 0.90080 0.91068 0.58135 2.00000 1.48675 1.91435 1.81882 1.99920 1.49312 1.99832 1.66778 1.99918 1.26481 1.96377 1.93063 1.99920 1.76758 1.87235 1.52141 1.99919 1.60203 1.71024 1.84556 1.21973 1.04345 1.01013 0.84941 1.21697 0.93601 0.91659 0.96825 0.92323 0.93123 0.90584 0.95345 0.92852 0.89828 0.94798 0.75256 0.89518 0.89655 0.77759 0.79476 0.79319 0.77578 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 595. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.12 -4.90 5.31 30.60 0.16 -4.73 16 3 C -0.11 -4.55 4.01 30.60 0.12 -4.43 16 4 C -0.05 -2.63 0.64 29.85 0.02 -2.61 16 5 O -0.91 -64.02 16.53 -129.98 -2.15 -66.17 16 6 Si 0.94 40.05 24.56 68.60 1.68 41.73 16 7 H -0.21 -6.14 7.11 99.48 0.71 -5.43 16 8 H -0.32 -15.28 7.11 99.48 0.71 -14.57 16 9 H -0.28 -12.47 6.37 99.48 0.63 -11.84 16 10 C 0.49 21.83 5.96 87.66 0.52 22.35 16 11 O -0.59 -32.79 16.51 15.95 0.26 -32.53 16 12 N -0.73 -19.54 5.09 -466.80 -2.37 -21.91 16 13 C 0.15 2.59 5.80 85.63 0.50 3.09 16 14 C -0.07 -0.59 5.25 -19.87 -0.10 -0.69 16 15 C -0.03 -0.14 9.70 22.27 0.22 0.07 16 16 C -0.11 -0.97 8.62 22.27 0.19 -0.78 16 17 C 0.33 4.88 4.82 22.27 0.11 4.99 16 18 F -0.22 -8.50 16.66 44.97 0.75 -7.75 16 19 F -0.16 -4.64 15.32 44.97 0.69 -3.95 16 20 F -0.16 -4.59 15.30 44.97 0.69 -3.90 16 21 F -0.16 -4.65 15.32 44.97 0.69 -3.96 16 22 F -0.16 -4.62 15.30 44.97 0.69 -3.93 16 23 C -0.11 -0.92 8.62 22.27 0.19 -0.73 16 24 C -0.02 -0.10 9.70 22.27 0.22 0.11 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.03 1.35 7.68 -2.39 -0.02 1.33 16 29 H 0.05 2.02 5.55 -2.39 -0.01 2.00 16 30 H 0.08 2.39 7.12 -2.39 -0.02 2.37 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 8.33 7.09 -92.71 -0.66 7.67 16 33 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 35 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.19 1.49 7.40 -2.91 -0.02 1.47 16 37 H 0.19 1.41 7.40 -2.91 -0.02 1.39 16 38 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -100.25 346.61 4.92 -95.33 By element: Atomic # 1 Polarization: -7.58 SS G_CDS: 1.13 Total: -6.44 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 2.86 Total: 13.47 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: -2.37 Total: -21.91 kcal Atomic # 8 Polarization: -96.81 SS G_CDS: -1.89 Total: -98.70 kcal Atomic # 9 Polarization: -26.99 SS G_CDS: 3.50 Total: -23.49 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.68 Total: 41.73 kcal Total: -100.25 4.92 -95.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144043522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 360.876 kcal (2) G-P(sol) polarization free energy of solvation -100.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 260.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 265.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.88 seconds