Wall clock time and date at job start Thu Mar 26 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47261 * 120.00425 * 2 1 3 5 5 C 1.53004 * 109.46721 * 240.00146 * 2 1 3 6 6 O 1.42901 * 109.47311 * 60.78928 * 5 2 1 7 7 Si 1.86300 * 109.46828 * 180.78971 * 5 2 1 8 8 H 1.48497 * 109.47346 * 60.00128 * 7 5 2 9 9 H 1.48500 * 109.46860 * 180.02562 * 7 5 2 10 10 H 1.48498 * 109.47232 * 299.99485 * 7 5 2 11 11 C 1.50702 * 109.47166 * 300.78650 * 5 2 1 12 12 O 1.21282 * 120.00313 * 249.73358 * 11 5 2 13 13 N 1.34781 * 119.99750 * 69.73328 * 11 5 2 14 14 C 1.39924 * 119.99962 * 175.03694 * 13 11 5 15 15 C 1.38895 * 120.07059 * 35.33263 * 14 13 11 16 16 C 1.38090 * 119.92826 * 180.02562 * 15 14 13 17 17 C 1.38300 * 120.07261 * 0.02562 * 16 15 14 18 18 C 1.38261 * 120.13918 * 359.97438 * 17 16 15 19 Xx 1.81001 * 119.96062 * 179.97438 * 18 17 16 20 19 F 9.61713 * 52.62767 * 218.00118 * 2 1 3 21 20 F 1.60997 * 90.00238 * 315.00410 * 19 18 17 22 21 F 1.61000 * 89.99782 * 135.00752 * 19 18 17 23 22 F 1.61000 * 90.00271 * 45.00447 * 19 18 17 24 23 F 1.61000 * 90.00083 * 225.00477 * 19 18 17 25 24 C 1.38135 * 120.07036 * 359.69124 * 18 17 16 26 25 H 1.08996 * 109.47606 * 59.99566 * 1 2 3 27 26 H 1.08999 * 109.47226 * 180.02562 * 1 2 3 28 27 H 1.09008 * 109.46744 * 299.99966 * 1 2 3 29 28 H 1.08999 * 109.47245 * 60.00626 * 3 2 1 30 29 H 1.09003 * 109.46724 * 180.02562 * 3 2 1 31 30 H 1.09003 * 109.47344 * 299.99980 * 3 2 1 32 31 H 1.09000 * 109.47226 * 54.28177 * 4 2 1 33 32 H 1.09002 * 109.47302 * 174.28564 * 4 2 1 34 33 H 1.09004 * 109.47211 * 294.28183 * 4 2 1 35 34 H 0.96998 * 119.99951 * 355.03035 * 13 11 5 36 35 H 1.08003 * 120.03534 * 359.97438 * 15 14 13 37 36 H 1.08001 * 119.96267 * 179.97438 * 16 15 14 38 37 H 1.08005 * 119.92978 * 179.97438 * 17 16 15 39 38 H 1.07995 * 120.03268 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0399 -0.7213 -1.2493 6 8 1.5788 -0.0370 -2.4160 7 14 3.9028 -0.7423 -1.2373 8 1 4.3820 -1.4534 -0.0250 9 1 4.3977 -1.4417 -2.4501 10 1 4.4135 0.6521 -1.2277 11 6 1.5217 -2.1363 -1.2591 12 8 2.2840 -3.0626 -1.0809 13 7 0.2109 -2.3725 -1.4660 14 6 -0.2537 -3.6875 -1.5787 15 6 0.3239 -4.6972 -0.8197 16 6 -0.1367 -5.9941 -0.9337 17 6 -1.1715 -6.2881 -1.8028 18 6 -1.7485 -5.2853 -2.5597 19 9 -4.3075 -6.0225 -4.7055 20 9 -2.2910 -6.9641 -4.2198 21 9 -3.9133 -4.3873 -3.1726 22 9 -3.7982 -6.5766 -2.5578 23 9 -2.4062 -4.7748 -4.8346 24 6 -1.2971 -3.9848 -2.4452 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.5955 -1.7152 1.3018 32 1 3.1252 -0.8108 1.1995 33 1 1.7627 -0.1518 2.1363 34 1 -0.4102 -1.6309 -1.5366 35 1 1.1328 -4.4684 -0.1417 36 1 0.3123 -6.7797 -0.3440 37 1 -1.5296 -7.3033 -1.8904 38 1 -1.7485 -3.2019 -3.0365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273933331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:10:36 Heat of formation + Delta-G solvation = 311.480957 kcal Electronic energy + Delta-G solvation = -29743.406304 eV Core-core repulsion = 24642.129245 eV Total energy + Delta-G solvation = -5101.277059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.104 amu Computer time = 26.24 seconds Orbital eigenvalues (eV) -42.79714 -42.63296 -42.59099 -42.47595 -42.11649 -40.80945 -38.88280 -36.24024 -34.73836 -31.48647 -30.66027 -29.67553 -26.73796 -26.59826 -24.63867 -23.19070 -22.58749 -20.02790 -18.62103 -17.49240 -16.72125 -16.14203 -15.44048 -14.83365 -14.70201 -14.24333 -13.97519 -13.79667 -13.62232 -13.48326 -13.17516 -13.03185 -12.94773 -12.89935 -12.67730 -12.62278 -12.57048 -12.54135 -12.46229 -12.32532 -12.22999 -12.12704 -12.00978 -11.72524 -11.49297 -11.08256 -10.82776 -10.77994 -10.67694 -10.39565 -10.35524 -10.10102 -9.83790 -9.79721 -9.79095 -9.60618 -9.49097 -9.27565 -8.46678 -6.29307 -5.84429 -3.70278 -3.20837 -2.11222 0.38152 0.49793 2.80636 3.00266 3.34686 3.47606 3.50326 3.51614 3.86534 4.17099 4.27909 4.40901 4.59591 4.70111 5.07630 5.41296 5.58539 5.63935 5.64609 5.73611 5.76264 5.90725 6.10730 6.12574 6.31256 6.35961 6.43578 6.51851 6.65395 6.66499 6.75089 7.06532 7.08115 7.26125 7.67983 8.57453 9.48822 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.003668 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.719240 B = 7632.070311 C = 7911.347018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.155 4.155 5 C -0.007 4.007 6 O -0.824 6.824 7 Si 0.982 3.018 8 H -0.294 1.294 9 H -0.289 1.289 10 H -0.286 1.286 11 C 0.513 3.487 12 O -0.550 6.550 13 N -0.651 5.651 14 C 0.225 3.775 15 C -0.118 4.118 16 C -0.042 4.042 17 C -0.144 4.144 18 C 0.388 3.612 19 F -0.160 7.160 20 F -0.167 7.167 21 F -0.168 7.168 22 F -0.179 7.179 23 F -0.150 7.150 24 C -0.163 4.163 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.429 0.571 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -6.441 8.864 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 C -0.185 4.185 4 C -0.212 4.212 5 C -0.110 4.110 6 O -0.769 6.769 7 Si 0.813 3.187 8 H -0.223 1.223 9 H -0.216 1.216 10 H -0.213 1.213 11 C 0.307 3.693 12 O -0.429 6.429 13 N -0.298 5.298 14 C 0.125 3.875 15 C -0.138 4.138 16 C -0.061 4.061 17 C -0.163 4.163 18 C 0.380 3.620 19 F -0.159 7.159 20 F -0.166 7.166 21 F -0.167 7.167 22 F -0.177 7.177 23 F -0.148 7.148 24 C -0.184 4.184 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.272 0.728 35 H 0.197 0.803 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.176 -6.758 8.768 11.071 hybrid contribution -1.854 -0.076 -1.088 2.150 sum -2.029 -6.834 7.680 10.479 Atomic orbital electron populations 1.21927 0.95839 1.00186 1.01273 1.21132 0.95598 0.96431 0.95650 1.21694 1.00049 0.95838 1.00949 1.22107 1.01527 0.99752 0.97812 1.24608 1.03837 0.86299 0.96217 1.95088 1.81707 1.68811 1.31330 0.85598 0.80440 0.75914 0.76764 1.22307 1.21589 1.21289 1.25134 0.78633 0.96298 0.69190 1.90405 1.55720 1.47175 1.49579 1.44966 1.11598 1.03679 1.69554 1.17969 0.90731 0.89060 0.89737 1.22074 1.00954 0.91540 0.99216 1.21273 0.91594 0.97786 0.95414 1.21689 0.97681 1.02077 0.94857 1.26752 0.64123 0.91970 0.79107 2.00000 1.99991 1.20304 1.95656 1.99921 1.89398 1.31441 1.95830 1.99920 1.97511 1.20208 1.99050 1.99917 1.97829 1.46020 1.73933 1.99922 1.92685 1.32334 1.89888 1.21561 0.99711 0.95550 1.01601 0.91231 0.93796 0.94205 0.94421 0.93654 0.91194 0.93481 0.92425 0.93481 0.72834 0.80285 0.80463 0.80882 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 525. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 7.06 37.16 0.26 -2.01 16 2 C -0.09 -1.68 0.37 -154.51 -0.06 -1.73 16 3 C -0.13 -2.42 7.86 37.16 0.29 -2.13 16 4 C -0.15 -2.58 7.77 37.16 0.29 -2.29 16 5 C -0.01 -0.15 0.24 -27.88 -0.01 -0.16 16 6 O -0.82 -23.25 16.21 -35.23 -0.57 -23.82 16 7 Si 0.98 22.68 22.06 -169.99 -3.75 18.93 16 8 H -0.29 -6.23 6.25 56.52 0.35 -5.88 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.29 -6.47 6.37 56.52 0.36 -6.11 16 11 C 0.51 10.70 5.02 -10.98 -0.06 10.65 16 12 O -0.55 -11.56 12.37 5.56 0.07 -11.49 16 13 N -0.65 -11.24 4.08 -9.86 -0.04 -11.28 16 14 C 0.22 3.17 6.30 -83.70 -0.53 2.65 16 15 C -0.12 -1.36 8.70 -39.39 -0.34 -1.70 16 16 C -0.04 -0.35 10.04 -39.61 -0.40 -0.74 16 17 C -0.14 -1.46 8.62 -39.55 -0.34 -1.80 16 18 C 0.39 5.38 4.82 -39.61 -0.19 5.19 16 19 F -0.16 -3.52 16.66 2.25 0.04 -3.49 16 20 F -0.17 -3.12 15.31 2.25 0.03 -3.09 16 21 F -0.17 -3.24 15.29 2.25 0.03 -3.21 16 22 F -0.18 -3.25 15.30 2.25 0.03 -3.22 16 23 F -0.15 -3.00 15.32 2.25 0.03 -2.96 16 24 C -0.16 -2.26 8.54 -39.39 -0.34 -2.59 16 25 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 26 H 0.04 0.67 5.22 -51.93 -0.27 0.40 16 27 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.86 5.58 -51.93 -0.29 0.57 16 30 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 31 H 0.05 0.74 7.45 -51.93 -0.39 0.35 16 32 H 0.06 1.00 5.21 -51.93 -0.27 0.73 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.43 7.16 6.23 -40.82 -0.25 6.90 16 35 H 0.18 2.18 6.23 -52.48 -0.33 1.85 16 36 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.17 1.50 7.39 -52.48 -0.39 1.11 16 38 H 0.18 2.49 7.40 -52.49 -0.39 2.11 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -32.86 326.18 -4.56 -37.42 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.95 Total: -2.03 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.41 Total: 3.33 kcal Atomic # 7 Polarization: -11.24 SS G_CDS: -0.04 Total: -11.28 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.50 Total: -35.31 kcal Atomic # 9 Polarization: -16.14 SS G_CDS: 0.18 Total: -15.97 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -3.75 Total: 18.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.86 -4.56 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273933331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 348.902 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 316.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 311.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.24 seconds