Wall clock time and date at job start Thu Mar 26 2020 08:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47237 * 2 1 4 4 C 1.53005 * 109.47148 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46869 * 295.49869 * 4 3 2 6 6 Si 1.86298 * 109.46998 * 55.49887 * 4 3 2 7 7 H 1.48495 * 109.47477 * 60.00625 * 6 4 3 8 8 H 1.48498 * 109.47392 * 299.99678 * 6 4 3 9 9 H 1.48512 * 109.46771 * 180.02562 * 6 4 3 10 10 C 1.50692 * 109.47122 * 175.49890 * 4 3 2 11 11 O 1.21286 * 120.00389 * 125.18193 * 10 4 3 12 12 N 1.34779 * 120.00132 * 305.18529 * 10 4 3 13 13 C 1.47329 * 135.87798 * 184.88313 * 12 10 4 14 14 C 1.52420 * 87.49026 * 154.12828 * 13 12 10 15 15 C 1.47330 * 135.88026 * 5.25375 * 12 10 4 16 16 S 1.82506 * 115.42719 * 141.19743 * 14 13 12 17 17 C 1.84188 * 95.54777 * 112.41021 * 16 14 13 18 18 C 1.55273 * 101.00875 * 34.72098 * 17 16 14 19 19 C 1.52426 * 117.39959 * 267.38911 * 14 13 12 20 20 H 1.09001 * 108.97771 * 105.72882 * 19 14 13 21 21 C 1.50704 * 108.97317 * 347.09260 * 19 14 13 22 22 O 1.21281 * 119.99931 * 265.95177 * 21 19 14 23 23 N 1.34771 * 120.00167 * 85.95710 * 21 19 14 24 24 C 1.46497 * 120.00217 * 180.02562 * 23 21 19 25 25 C 1.50705 * 109.47496 * 179.97438 * 24 23 21 26 26 N 1.29941 * 126.28514 * 90.02367 * 25 24 23 27 27 O 1.21298 * 110.24969 * 179.97438 * 26 25 24 28 28 C 1.33648 * 109.81430 * 359.97438 * 27 26 25 29 29 C 1.50699 * 126.55283 * 179.97438 * 28 27 26 30 30 N 1.31138 * 106.89239 * 359.76829 * 28 27 26 31 31 H 1.09005 * 109.46845 * 300.00770 * 1 2 3 32 32 H 1.08997 * 109.47300 * 60.00108 * 1 2 3 33 33 H 1.09002 * 109.47192 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47248 * 239.99417 * 2 1 3 35 35 H 1.09010 * 109.47053 * 119.99308 * 2 1 3 36 36 H 1.08991 * 109.47654 * 59.99809 * 3 2 1 37 37 H 1.09000 * 109.46392 * 299.99587 * 3 2 1 38 38 H 1.08998 * 113.53313 * 268.75630 * 13 12 10 39 39 H 1.09004 * 113.53126 * 39.40039 * 13 12 10 40 40 H 1.08998 * 113.52723 * 320.60340 * 15 12 10 41 41 H 1.09000 * 113.52945 * 91.24014 * 15 12 10 42 42 H 1.08997 * 111.11620 * 276.78791 * 17 16 14 43 43 H 1.08998 * 111.14903 * 152.66620 * 17 16 14 44 44 H 1.08998 * 109.59774 * 199.14263 * 18 17 16 45 45 H 1.08998 * 109.59338 * 79.03359 * 18 17 16 46 46 H 0.97000 * 120.00118 * 359.97438 * 23 21 19 47 47 H 1.09002 * 109.47441 * 299.99749 * 24 23 21 48 48 H 1.09004 * 109.47311 * 59.99731 * 24 23 21 49 49 H 1.08997 * 109.46907 * 359.97438 * 29 28 27 50 50 H 1.09005 * 109.47001 * 119.97565 * 29 28 27 51 51 H 1.08995 * 109.46586 * 239.97519 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0468 0.8623 1.2151 6 14 4.1904 0.4478 -1.4486 7 1 3.6950 1.0507 -2.7120 8 1 3.6955 -0.9480 -1.3387 9 1 5.6755 0.4473 -1.4488 10 6 4.0723 2.8589 -0.1121 11 8 4.8454 3.2951 0.7144 12 7 3.6625 3.6411 -1.1303 13 6 3.9809 4.9939 -1.6192 14 6 3.5409 4.5254 -3.0012 15 6 2.6960 3.5184 -2.2356 16 16 2.6101 5.7495 -3.9841 17 6 3.9172 5.9843 -5.2603 18 6 4.5105 4.5519 -5.3441 19 6 4.6157 3.9708 -3.9290 20 1 4.5130 2.8870 -3.9824 21 6 5.9717 4.3038 -3.3621 22 8 6.5524 5.3043 -3.7266 23 7 6.5393 3.4898 -2.4501 24 6 7.8572 3.8138 -1.8986 25 6 8.2619 2.7529 -0.9077 26 7 8.9247 1.6668 -1.1715 27 8 9.0921 1.0207 -0.1587 28 6 8.5355 1.6526 0.8790 29 6 8.5206 1.1851 2.3116 30 7 8.0088 2.7596 0.4132 31 1 -0.3633 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.6767 1.9562 -0.8901 38 1 3.3415 5.7702 -1.1989 39 1 5.0410 5.2403 -1.5585 40 1 2.6796 2.5284 -2.6913 41 1 1.7006 3.8858 -1.9860 42 1 4.6675 6.7011 -4.9266 43 1 3.4856 6.2869 -6.2143 44 1 5.5011 4.5924 -5.7970 45 1 3.8600 3.9217 -5.9504 46 1 6.0748 2.6898 -2.1584 47 1 8.5887 3.8554 -2.7057 48 1 7.8138 4.7809 -1.3975 49 1 9.0418 0.2308 2.3877 50 1 9.0197 1.9229 2.9398 51 1 7.4895 1.0634 2.6432 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269906133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 08:08:19 Heat of formation + Delta-G solvation = -40.598905 kcal Electronic energy + Delta-G solvation = -38872.843905 eV Core-core repulsion = 34095.798346 eV Total energy + Delta-G solvation = -4777.045559 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 397.155 amu Computer time = 14.17 seconds Orbital eigenvalues (eV) -46.80000 -42.40635 -40.53786 -38.71671 -37.62135 -36.40501 -36.13974 -35.58504 -34.38531 -32.58425 -31.11522 -30.14315 -29.62988 -28.66586 -27.67198 -27.23786 -24.90367 -24.81947 -23.53259 -22.98328 -22.54078 -21.63448 -20.85550 -19.64618 -19.40153 -18.88579 -18.43731 -18.02279 -17.80091 -17.31103 -16.81861 -16.53502 -16.35177 -16.08330 -15.92370 -15.67080 -15.32227 -15.24351 -14.97014 -14.84306 -14.66214 -14.31241 -14.25570 -14.08262 -14.02743 -13.96559 -13.70242 -13.48243 -13.23453 -13.10884 -13.09580 -12.88470 -12.68159 -12.59699 -12.55156 -12.48831 -12.40870 -12.17470 -12.09834 -11.80059 -11.71611 -11.47255 -11.25889 -11.10169 -11.01122 -10.87339 -10.54435 -10.43723 -9.65021 -8.74231 -8.19676 -7.70177 -0.09425 0.58798 0.88057 1.05863 1.12248 1.19905 1.27008 1.35326 1.71532 1.87287 1.95095 2.10128 2.37746 2.68020 2.77575 2.79028 3.10552 3.46236 3.52539 3.72349 3.77991 3.88032 4.03030 4.09243 4.18029 4.19920 4.21378 4.29020 4.35122 4.39057 4.40651 4.43099 4.44941 4.51475 4.53613 4.55799 4.69167 4.75353 4.80923 4.82867 4.85523 4.92748 4.93381 5.01804 5.03712 5.04334 5.08726 5.34656 5.37880 5.51788 5.65099 5.97596 6.75014 6.85388 6.93568 7.43280 8.00014 Molecular weight = 397.15amu Principal moments of inertia in cm(-1) A = 0.006676 B = 0.005253 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4193.124412 B = 5328.921039 C = 8365.185594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.027 4.027 5 O -0.894 6.894 6 Si 0.923 3.077 7 H -0.215 1.215 8 H -0.270 1.270 9 H -0.327 1.327 10 C 0.507 3.493 11 O -0.562 6.562 12 N -0.658 5.658 13 C 0.111 3.889 14 C -0.040 4.040 15 C 0.120 3.880 16 S -0.242 6.242 17 C -0.061 4.061 18 C -0.098 4.098 19 C -0.099 4.099 20 H 0.115 0.885 21 C 0.530 3.470 22 O -0.545 6.545 23 N -0.728 5.728 24 C 0.220 3.780 25 C 0.139 3.861 26 N -0.387 5.387 27 O 0.078 5.922 28 C 0.189 3.811 29 C -0.059 4.059 30 N -0.487 5.487 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.140 0.860 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.394 0.606 47 H 0.117 0.883 48 H 0.095 0.905 49 H 0.131 0.869 50 H 0.130 0.870 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 3.781 -13.320 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.129 4.129 5 O -0.841 6.841 6 Si 0.752 3.248 7 H -0.140 1.140 8 H -0.196 1.196 9 H -0.257 1.257 10 C 0.300 3.700 11 O -0.438 6.438 12 N -0.401 5.401 13 C -0.014 4.014 14 C -0.151 4.151 15 C -0.004 4.004 16 S -0.012 6.012 17 C -0.209 4.209 18 C -0.137 4.137 19 C -0.122 4.122 20 H 0.133 0.867 21 C 0.317 3.683 22 O -0.423 6.423 23 N -0.380 5.380 24 C 0.095 3.905 25 C -0.134 4.134 26 N -0.096 5.096 27 O 0.017 5.983 28 C -0.030 4.030 29 C -0.116 4.116 30 N -0.220 5.220 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.158 0.842 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.228 0.772 47 H 0.134 0.866 48 H 0.113 0.887 49 H 0.150 0.850 50 H 0.148 0.852 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.378 4.703 -14.020 14.792 hybrid contribution 1.299 -0.915 1.534 2.208 sum 0.920 3.788 -12.486 13.080 Atomic orbital electron populations 1.21723 0.93168 1.02270 1.02370 1.21475 0.97406 0.96671 1.00486 1.21977 0.97007 0.96866 0.99701 1.24054 0.94801 0.88985 1.05013 1.94961 1.84112 1.75513 1.29468 0.86826 0.76698 0.83141 0.78135 1.14013 1.19571 1.25673 1.23859 0.79854 0.89215 0.77084 1.90499 1.37377 1.75452 1.40488 1.50493 1.43352 1.16162 1.30077 1.23178 1.00994 0.87764 0.89483 1.23829 0.97597 0.98504 0.95188 1.23231 0.94164 0.99749 0.83257 1.87592 1.26999 1.54750 1.31833 1.24528 0.96863 0.99447 1.00017 1.22355 1.04484 0.95166 0.91725 1.21747 0.89233 1.04546 0.96635 0.86707 1.20745 0.87486 0.82324 0.77733 1.90670 1.64660 1.26237 1.60690 1.46265 1.19825 1.28287 1.43660 1.19401 0.85507 0.92792 0.92782 1.25946 0.99125 0.96340 0.92013 1.74490 1.20435 1.07035 1.07618 1.85207 1.57998 1.42417 1.12643 1.29758 0.89865 0.86803 0.96617 1.20688 1.05764 1.05308 0.79855 1.72065 1.20751 1.21486 1.07704 0.93262 0.90650 0.91602 0.92795 0.94802 0.95366 0.90800 0.88419 0.92524 0.87915 0.86618 0.89349 0.84161 0.88640 0.86309 0.77247 0.86563 0.88656 0.85022 0.85176 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.43 16 2 C -0.12 -5.12 5.24 30.59 0.16 -4.96 16 3 C -0.12 -5.37 4.05 30.60 0.12 -5.25 16 4 C -0.03 -1.47 0.62 29.85 0.02 -1.45 16 5 O -0.89 -63.74 16.72 -129.99 -2.17 -65.92 16 6 Si 0.92 43.83 22.26 68.60 1.53 45.36 16 7 H -0.21 -7.41 5.31 99.48 0.53 -6.89 16 8 H -0.27 -12.85 6.37 99.48 0.63 -12.22 16 9 H -0.33 -17.61 7.10 99.48 0.71 -16.90 16 10 C 0.51 26.88 6.06 87.65 0.53 27.41 16 11 O -0.56 -34.98 17.28 15.94 0.28 -34.70 16 12 N -0.66 -26.49 3.40 -858.32 -2.91 -29.40 16 13 C 0.11 3.84 7.43 83.73 0.62 4.46 16 14 C -0.04 -1.08 1.37 -11.46 -0.02 -1.09 16 15 C 0.12 3.52 5.14 83.63 0.43 3.95 16 16 S -0.24 -5.26 22.63 -56.49 -1.28 -6.54 16 17 C -0.06 -1.03 7.39 72.76 0.54 -0.50 16 18 C -0.10 -1.72 5.49 31.49 0.17 -1.54 16 19 C -0.10 -2.50 2.83 -11.62 -0.03 -2.53 16 20 H 0.11 2.78 7.68 -2.39 -0.02 2.76 16 21 C 0.53 16.75 4.64 87.66 0.41 17.16 16 22 O -0.54 -18.11 15.58 -3.03 -0.05 -18.16 16 23 N -0.73 -26.73 5.08 -466.78 -2.37 -29.10 16 24 C 0.22 7.88 6.30 85.64 0.54 8.42 16 25 C 0.14 5.68 7.58 138.47 1.05 6.73 16 26 N -0.39 -15.37 12.16 -60.33 -0.73 -16.10 16 27 O 0.08 2.94 11.31 74.79 0.85 3.79 16 28 C 0.19 7.21 8.51 88.38 0.75 7.97 16 29 C -0.06 -1.62 10.51 71.24 0.75 -0.88 16 30 N -0.49 -21.68 11.55 -303.21 -3.50 -25.18 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.14 5.36 -2.39 -0.01 2.13 16 35 H 0.03 1.65 7.81 -2.38 -0.02 1.63 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 2.70 5.34 -2.39 -0.01 2.69 16 38 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.06 2.20 6.03 -2.39 -0.01 2.18 16 40 H 0.10 2.81 4.98 -2.39 -0.01 2.80 16 41 H 0.12 2.92 8.07 -2.39 -0.02 2.90 16 42 H 0.09 1.78 7.82 -2.39 -0.02 1.77 16 43 H 0.14 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.67 7.47 -2.39 -0.02 1.65 16 45 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.39 16.38 6.91 -92.71 -0.64 15.74 16 47 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 48 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 49 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 51 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -90.82 414.98 -2.77 -93.59 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.85 Total: 27.90 kcal Atomic # 6 Polarization: 47.70 SS G_CDS: 6.76 Total: 54.46 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -9.52 Total: -99.78 kcal Atomic # 8 Polarization: -113.89 SS G_CDS: -1.10 Total: -114.99 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.53 Total: 45.36 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -1.28 Total: -6.54 kcal Total: -90.82 -2.77 -93.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269906133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.990 kcal (2) G-P(sol) polarization free energy of solvation -90.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.17 seconds