Wall clock time and date at job start Thu Mar 26 2020 09:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46897 * 2 1 4 4 C 1.53005 * 109.46948 * 240.00270 * 2 1 3 5 5 C 1.52998 * 109.47189 * 120.00315 * 2 1 3 6 6 O 1.42900 * 109.46884 * 178.15817 * 5 2 1 7 7 Si 1.86297 * 109.47066 * 298.15702 * 5 2 1 8 8 H 1.48499 * 109.47128 * 182.37822 * 7 5 2 9 9 H 1.48502 * 109.47115 * 302.37683 * 7 5 2 10 10 H 1.48506 * 109.47100 * 62.37924 * 7 5 2 11 11 C 1.50697 * 109.47115 * 58.15909 * 5 2 1 12 12 O 1.21278 * 119.99915 * 266.59894 * 11 5 2 13 13 N 1.34780 * 119.99897 * 86.88072 * 11 5 2 14 14 C 1.46500 * 119.99457 * 185.08258 * 13 11 5 15 15 C 1.53000 * 109.46849 * 185.51339 * 14 13 11 16 16 N 1.46494 * 112.85274 * 283.58307 * 15 14 13 17 17 C 1.32020 * 120.00265 * 337.85238 * 16 15 14 18 18 C 1.46952 * 121.47604 * 148.05297 * 17 16 15 19 19 C 1.34842 * 118.16474 * 193.27534 * 18 17 16 20 20 N 1.36102 * 120.94548 * 0.28341 * 19 18 17 21 21 H 0.97007 * 118.80828 * 164.89533 * 20 19 18 22 22 C 1.35859 * 122.38204 * 344.87338 * 20 19 18 23 23 C 1.36206 * 120.56894 * 14.84930 * 22 20 19 24 24 C 1.48296 * 121.15164 * 179.83508 * 23 22 20 25 25 N 1.34093 * 126.68414 * 292.29942 * 24 23 22 26 26 N 1.28985 * 107.26060 * 179.87024 * 25 24 23 27 27 N 1.28724 * 108.96455 * 0.39845 * 26 25 24 28 28 H 0.96996 * 125.33920 * 179.73040 * 27 26 25 29 29 N 1.28873 * 109.33163 * 359.74470 * 27 26 25 30 30 C 1.53785 * 113.61657 * 152.27227 * 15 14 13 31 31 C 1.53776 * 87.08330 * 220.02387 * 30 15 14 32 32 C 1.53784 * 113.61150 * 54.77626 * 15 14 13 33 33 H 1.08992 * 109.47230 * 303.29222 * 1 2 3 34 34 H 1.08999 * 109.47389 * 63.29947 * 1 2 3 35 35 H 1.09004 * 109.46378 * 183.29716 * 1 2 3 36 36 H 1.08994 * 109.47478 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47408 * 300.00711 * 3 2 1 38 38 H 1.09007 * 109.46977 * 60.00138 * 3 2 1 39 39 H 1.08992 * 109.47228 * 299.99900 * 4 2 1 40 40 H 1.09000 * 109.47203 * 59.99838 * 4 2 1 41 41 H 1.09001 * 109.47011 * 179.97438 * 4 2 1 42 42 H 0.96994 * 120.00444 * 5.07639 * 13 11 5 43 43 H 1.08998 * 109.47476 * 305.51262 * 14 13 11 44 44 H 1.08996 * 109.47743 * 65.51848 * 14 13 11 45 45 H 1.08001 * 120.91921 * 13.25821 * 18 17 16 46 46 H 1.08000 * 119.53162 * 180.26328 * 19 18 17 47 47 H 1.07995 * 119.72729 * 195.15551 * 22 20 19 48 48 H 1.09004 * 113.61263 * 334.57339 * 30 15 14 49 49 H 1.08994 * 113.61490 * 105.47044 * 30 15 14 50 50 H 1.09008 * 113.61520 * 270.88248 * 31 30 15 51 51 H 1.08999 * 113.62112 * 139.98176 * 31 30 15 52 52 H 1.09002 * 113.61648 * 254.52647 * 32 15 14 53 53 H 1.09001 * 113.61889 * 25.43559 * 32 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 8 3.4684 -0.7589 1.2277 7 14 1.4656 0.1888 2.7698 8 1 2.0084 -0.4782 3.9805 9 1 1.9491 1.5920 2.7190 10 1 -0.0185 0.1781 2.8220 11 6 1.5008 -2.1283 1.2721 12 8 0.4740 -2.3745 1.8687 13 7 2.1627 -3.1141 0.6345 14 6 1.5831 -4.4576 0.5619 15 6 2.5870 -5.4117 -0.0883 16 7 2.6675 -5.2487 -1.5419 17 6 1.6627 -4.7027 -2.2016 18 6 1.8852 -3.9034 -3.4145 19 6 0.8640 -3.1561 -3.8805 20 7 -0.3379 -3.1377 -3.2423 21 1 -0.9725 -2.4372 -3.4607 22 6 -0.6814 -4.0650 -2.3107 23 6 0.2644 -4.8733 -1.7564 24 6 -0.0955 -5.8874 -0.7359 25 7 -0.5295 -5.6504 0.5105 26 7 -0.7318 -6.7952 1.0694 27 7 -0.4361 -7.7274 0.2324 28 1 -0.4973 -8.6794 0.4082 29 7 -0.0455 -7.1978 -0.8757 30 6 2.4281 -6.8736 0.3617 31 6 3.9637 -6.9511 0.3847 32 6 3.9589 -5.4294 0.6064 33 1 -0.3633 0.5640 0.8589 34 1 -0.3634 0.4617 -0.9181 35 1 -0.3632 -1.0260 0.0591 36 1 3.1299 1.4426 -0.0005 37 1 1.6765 1.9564 -0.8899 38 1 1.6766 1.9563 0.8901 39 1 1.6767 -1.7488 -1.2494 40 1 1.6767 -0.2074 -2.1393 41 1 3.1300 -0.7208 -1.2496 42 1 3.0226 -2.9341 0.2235 43 1 1.3486 -4.8070 1.5674 44 1 0.6712 -4.4283 -0.0344 45 1 2.8403 -3.9139 -3.9186 46 1 1.0020 -2.5634 -4.7728 47 1 -1.7139 -4.1656 -2.0105 48 1 1.9707 -6.9804 1.3453 49 1 1.9697 -7.5148 -0.3911 50 1 4.4001 -7.2522 -0.5678 51 1 4.3600 -7.5142 1.2296 52 1 4.7364 -4.9047 0.0510 53 1 3.9201 -5.1414 1.6569 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589073468.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 09:26:52 Heat of formation + Delta-G solvation = 131.245233 kcal Electronic energy + Delta-G solvation = -41201.682717 eV Core-core repulsion = 36500.259525 eV Total energy + Delta-G solvation = -4701.423192 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 388.201 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -45.55012 -41.45295 -40.45407 -39.82376 -37.37539 -36.36550 -35.18562 -34.69832 -34.21406 -32.09425 -31.92472 -30.70542 -28.86319 -27.92135 -27.78654 -26.83808 -25.81983 -25.55594 -25.40602 -24.08825 -22.97945 -22.58555 -21.08746 -20.37497 -19.91863 -19.48086 -19.26859 -18.48172 -17.48863 -17.03481 -16.92516 -16.83224 -16.35319 -16.06232 -15.77149 -15.71818 -15.35981 -15.13242 -14.94813 -14.72946 -14.60426 -14.49443 -14.32273 -14.01272 -13.89967 -13.60782 -13.35924 -13.24800 -13.08722 -12.89553 -12.80759 -12.77221 -12.41411 -12.35439 -12.26492 -12.12800 -11.95121 -11.89963 -11.80769 -11.70141 -11.58208 -11.50391 -11.18011 -11.10338 -10.96619 -10.90298 -10.53158 -10.38789 -9.64907 -9.44013 -8.10426 -7.98892 -7.56119 0.14796 0.31010 0.52319 1.04735 1.36232 1.45425 1.50569 1.63255 2.13173 2.20340 2.36239 2.53763 2.87806 3.03838 3.37220 3.53126 3.62024 3.72652 3.76482 3.86906 4.10487 4.22544 4.29880 4.35390 4.37107 4.39516 4.41620 4.44087 4.50693 4.55881 4.58947 4.65220 4.78286 4.82046 4.87652 4.93537 4.96523 5.05713 5.06565 5.08851 5.11345 5.18833 5.22244 5.23976 5.30230 5.36757 5.41893 5.43364 5.67841 5.71571 5.72916 5.85200 5.96177 6.01188 6.07091 6.50227 7.00674 7.24524 7.27767 7.58530 8.09288 Molecular weight = 388.20amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.004645 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.268434 B = 6026.578525 C = 6710.566367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.097 4.097 5 C -0.010 4.010 6 O -0.894 6.894 7 Si 0.942 3.058 8 H -0.336 1.336 9 H -0.277 1.277 10 H -0.281 1.281 11 C 0.498 3.502 12 O -0.608 6.608 13 N -0.696 5.696 14 C 0.089 3.911 15 C 0.093 3.907 16 N -0.594 5.594 17 C 0.274 3.726 18 C -0.209 4.209 19 C 0.137 3.863 20 N -0.585 5.585 21 H 0.443 0.557 22 C 0.197 3.803 23 C -0.206 4.206 24 C 0.233 3.767 25 N -0.284 5.284 26 N -0.071 5.071 27 N -0.211 5.211 28 H 0.489 0.511 29 N -0.280 5.280 30 C -0.145 4.145 31 C -0.106 4.106 32 C -0.125 4.125 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.399 0.601 43 H 0.017 0.983 44 H 0.126 0.874 45 H 0.156 0.844 46 H 0.221 0.779 47 H 0.184 0.816 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.075 0.925 52 H 0.063 0.937 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 -10.053 -18.128 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.182 4.182 4 C -0.154 4.154 5 C -0.112 4.112 6 O -0.842 6.842 7 Si 0.776 3.224 8 H -0.266 1.266 9 H -0.203 1.203 10 H -0.208 1.208 11 C 0.288 3.712 12 O -0.494 6.494 13 N -0.347 5.347 14 C -0.035 4.035 15 C 0.000 4.000 16 N -0.313 5.313 17 C 0.099 3.901 18 C -0.234 4.234 19 C 0.011 3.989 20 N -0.192 5.192 21 H 0.283 0.717 22 C 0.062 3.938 23 C -0.221 4.221 24 C -0.047 4.047 25 N -0.157 5.157 26 N -0.065 5.065 27 N -0.060 5.060 28 H 0.347 0.653 29 N -0.132 5.132 30 C -0.184 4.184 31 C -0.144 4.144 32 C -0.164 4.164 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.234 0.766 43 H 0.036 0.964 44 H 0.143 0.857 45 H 0.174 0.826 46 H 0.237 0.763 47 H 0.201 0.799 48 H 0.076 0.924 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.093 0.907 52 H 0.082 0.918 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.706 -10.430 -16.497 22.261 hybrid contribution 0.132 -0.547 1.159 1.289 sum -10.575 -10.977 -15.338 21.623 Atomic orbital electron populations 1.21906 0.95122 1.01005 1.01516 1.20933 0.94189 0.95994 0.97464 1.21692 1.00632 0.95345 1.00536 1.21427 0.99822 0.98961 0.95238 1.24158 0.98810 0.89057 0.99208 1.94922 1.04664 1.92039 1.92620 0.86287 0.75195 0.78642 0.82284 1.26618 1.20315 1.20799 1.23203 0.81854 0.91006 0.75123 1.90388 1.27504 1.85089 1.46371 1.45779 1.23648 1.08573 1.56659 1.23119 0.98639 0.82908 0.98869 1.22134 0.94625 0.93834 0.89419 1.72504 1.31614 1.24639 1.02576 1.21971 0.86974 0.87205 0.93953 1.22034 1.00744 1.02164 0.98475 1.22300 0.82605 0.97966 0.96013 1.41076 1.17513 1.26597 1.34059 0.71693 1.21848 0.99247 0.86271 0.86387 1.18465 0.95413 1.04218 1.04032 1.22960 1.00966 0.88870 0.91953 1.76706 1.16772 1.16077 1.06182 1.78874 1.15980 0.92196 1.19469 1.47722 1.39958 1.13121 1.05246 0.65316 1.74938 1.18971 1.09860 1.09467 1.23443 0.98554 0.96626 0.99826 1.22548 0.94835 0.94762 1.02220 1.22790 0.97026 0.98103 0.98462 0.94672 0.89592 0.94025 0.94386 0.90278 0.95065 0.93871 0.91139 0.95246 0.76556 0.96444 0.85734 0.82640 0.76293 0.79930 0.92430 0.90005 0.89252 0.90659 0.91838 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 7.67 71.98 0.55 -4.87 16 2 C -0.08 -3.87 0.37 -52.18 -0.02 -3.89 16 3 C -0.13 -5.38 7.82 71.98 0.56 -4.82 16 4 C -0.10 -3.86 7.80 71.98 0.56 -3.30 16 5 C -0.01 -0.57 0.27 29.85 0.01 -0.56 16 6 O -0.89 -60.75 15.53 -148.98 -2.31 -63.06 16 7 Si 0.94 54.56 22.20 68.60 1.52 56.08 16 8 H -0.34 -21.54 7.11 99.48 0.71 -20.83 16 9 H -0.28 -15.11 6.25 99.48 0.62 -14.48 16 10 H -0.28 -15.34 6.55 99.48 0.65 -14.69 16 11 C 0.50 28.26 4.74 87.66 0.42 28.67 16 12 O -0.61 -36.33 14.39 -3.02 -0.04 -36.38 16 13 N -0.70 -35.71 4.01 -463.07 -1.86 -37.56 16 14 C 0.09 3.99 2.70 86.38 0.23 4.23 16 15 C 0.09 3.60 0.57 4.13 0.00 3.60 16 16 N -0.59 -21.51 10.49 -287.48 -3.02 -24.53 16 17 C 0.27 8.36 6.23 43.91 0.27 8.63 16 18 C -0.21 -4.47 10.31 23.77 0.25 -4.22 16 19 C 0.14 1.57 11.11 83.25 0.92 2.49 16 20 N -0.59 -6.31 5.24 -194.11 -1.02 -7.32 16 21 H 0.44 1.19 8.89 -92.70 -0.82 0.37 16 22 C 0.20 3.65 10.89 83.60 0.91 4.56 16 23 C -0.21 -5.77 4.11 -18.56 -0.08 -5.84 16 24 C 0.23 7.15 4.35 137.29 0.60 7.74 16 25 N -0.28 -10.06 9.12 -53.31 -0.49 -10.55 16 26 N -0.07 -2.11 13.31 37.02 0.49 -1.62 16 27 N -0.21 -4.62 7.02 37.02 0.26 -4.36 16 28 H 0.49 5.68 8.96 -347.53 -3.12 2.56 16 29 N -0.28 -7.36 9.99 -53.26 -0.53 -7.90 16 30 C -0.15 -4.92 5.15 31.12 0.16 -4.76 16 31 C -0.11 -3.42 7.99 31.12 0.25 -3.17 16 32 C -0.13 -5.02 6.75 31.12 0.21 -4.81 16 33 H 0.03 1.45 5.88 -2.39 -0.01 1.43 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.04 1.73 6.53 -2.39 -0.02 1.72 16 36 H 0.04 1.82 7.73 -2.39 -0.02 1.80 16 37 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.03 1.37 5.40 -2.38 -0.01 1.36 16 39 H 0.04 1.71 6.42 -2.39 -0.02 1.69 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.34 7.64 -2.39 -0.02 1.32 16 42 H 0.40 21.61 7.19 -92.71 -0.67 20.94 16 43 H 0.02 0.89 7.25 -2.39 -0.02 0.88 16 44 H 0.13 5.16 2.07 -4.74 -0.01 5.15 16 45 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 46 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 47 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 48 H 0.06 2.04 7.78 -2.38 -0.02 2.02 16 49 H 0.08 2.59 5.80 -2.39 -0.01 2.58 16 50 H 0.09 2.76 8.14 -2.38 -0.02 2.75 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 53 H 0.06 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -96.83 398.73 -4.17 -101.00 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -2.99 Total: 16.50 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 5.81 Total: 19.70 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -6.16 Total: -93.83 kcal Atomic # 8 Polarization: -97.08 SS G_CDS: -2.36 Total: -99.44 kcal Atomic # 14 Polarization: 54.56 SS G_CDS: 1.52 Total: 56.08 kcal Total: -96.83 -4.17 -101.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589073468.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.244 kcal (2) G-P(sol) polarization free energy of solvation -96.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds