Wall clock time and date at job start Thu Mar 26 2020 09:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30877 * 125.87938 * 2 1 4 4 N 1.40088 * 108.21346 * 180.29127 * 3 2 1 5 5 C 1.40188 * 126.04810 * 179.69638 * 4 3 2 6 6 C 1.38853 * 120.06521 * 221.07517 * 5 4 3 7 7 C 1.38102 * 119.93360 * 180.02562 * 6 5 4 8 8 C 1.38298 * 120.06637 * 359.97438 * 7 6 5 9 9 C 1.38263 * 120.13355 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.96614 * 180.02562 * 9 8 7 11 11 F 1.39903 * 109.47372 * 359.97438 * 10 9 8 12 12 F 1.39902 * 109.47103 * 119.99852 * 10 9 8 13 13 F 1.39902 * 109.46912 * 239.99914 * 10 9 8 14 14 C 1.38147 * 120.06468 * 359.76003 * 9 8 7 15 15 C 1.35219 * 107.89476 * 359.72057 * 4 3 2 16 16 C 1.50706 * 126.14306 * 180.02562 * 15 4 3 17 17 C 1.35315 * 107.71591 * 0.02562 * 15 4 3 18 18 C 1.50702 * 126.03675 * 180.02562 * 17 15 4 19 19 O 1.42899 * 109.46945 * 318.34357 * 18 17 15 20 20 Si 1.86305 * 109.46933 * 198.34891 * 18 17 15 21 21 H 1.48490 * 109.47190 * 50.20264 * 20 18 17 22 22 H 1.48505 * 109.46788 * 290.20164 * 20 18 17 23 23 H 1.48499 * 109.46801 * 170.20629 * 20 18 17 24 24 C 1.50696 * 109.47349 * 78.34584 * 18 17 15 25 25 O 1.21280 * 119.99907 * 236.13207 * 24 18 17 26 26 N 1.34776 * 119.99878 * 56.12712 * 24 18 17 27 27 C 1.46498 * 119.99955 * 184.76331 * 26 24 18 28 Xx 1.56996 * 109.47422 * 93.76089 * 27 26 24 29 28 O 1.41997 * 120.00719 * 154.64728 * 28 27 26 30 29 O 1.42006 * 119.99545 * 334.64456 * 28 27 26 31 30 H 1.09000 * 109.46738 * 262.84863 * 1 2 3 32 31 H 1.09000 * 109.46851 * 22.84044 * 1 2 3 33 32 H 1.08997 * 109.47163 * 142.83904 * 1 2 3 34 33 H 1.08002 * 120.03989 * 359.97438 * 6 5 4 35 34 H 1.08004 * 119.96618 * 180.02562 * 7 6 5 36 35 H 1.08001 * 119.93593 * 180.02562 * 8 7 6 37 36 H 1.07997 * 120.03403 * 180.25869 * 14 9 8 38 37 H 1.09003 * 109.46819 * 265.72215 * 16 15 4 39 38 H 1.09002 * 109.46745 * 25.71491 * 16 15 4 40 39 H 1.08996 * 109.47223 * 145.71691 * 16 15 4 41 40 H 0.97004 * 120.00372 * 4.76546 * 26 24 18 42 41 H 1.09007 * 109.47325 * 213.75778 * 27 26 24 43 42 H 1.09001 * 109.47369 * 333.75918 * 27 26 24 44 43 H 0.96698 * 114.00782 * 179.97438 * 29 28 27 45 44 H 0.96703 * 114.00143 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0604 0.0000 4 7 3.6089 0.6353 -0.0068 5 6 4.7389 1.4650 -0.0150 6 6 5.8312 1.1448 -0.8101 7 6 6.9432 1.9638 -0.8157 8 6 6.9693 3.1021 -0.0307 9 6 5.8827 3.4241 0.7613 10 6 5.9150 4.6657 1.6147 11 9 7.1380 5.3216 1.4378 12 9 4.8701 5.5169 1.2393 13 9 5.7669 4.3109 2.9599 14 6 4.7654 2.6117 0.7669 15 6 3.6143 -0.7169 -0.0045 16 6 4.8349 -1.6008 -0.0094 17 6 2.3270 -1.1338 0.0028 18 6 1.8591 -2.5663 0.0081 19 8 2.6635 -3.3335 -0.8898 20 14 0.0787 -2.6400 -0.5358 21 1 -0.0852 -1.8759 -1.7984 22 1 -0.7853 -2.0478 0.5169 23 1 -0.3124 -4.0550 -0.7590 24 6 1.9829 -3.1300 1.4002 25 8 2.6339 -4.1352 1.5916 26 7 1.3702 -2.5171 2.4323 27 6 1.5749 -3.0034 3.7990 28 8 2.8024 -2.0756 5.8831 29 8 3.7498 -1.6027 3.6632 30 1 -0.3633 -0.1279 1.0197 31 1 -0.3633 0.9471 -0.3989 32 1 -0.3633 -0.8190 -0.6207 33 1 5.8117 0.2558 -1.4231 34 1 7.7930 1.7155 -1.4344 35 1 7.8398 3.7413 -0.0370 36 1 3.9153 2.8659 1.3826 37 1 5.0789 -1.8777 -1.0350 38 1 5.6745 -1.0633 0.4313 39 1 4.6341 -2.5007 0.5720 40 1 0.7936 -1.7540 2.2704 41 1 0.6608 -2.8618 4.3758 42 1 1.8279 -4.0633 3.7735 43 1 3.5591 -1.5654 6.2028 44 1 4.4282 -1.1307 4.1652 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585072924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 09:21:36 Heat of formation + Delta-G solvation = -35.314414 kcal Electronic energy + Delta-G solvation = -37886.984666 eV Core-core repulsion = 32286.574734 eV Total energy + Delta-G solvation = -5600.409932 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.120 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -50.28922 -47.82264 -47.72325 -41.36199 -39.60791 -39.13350 -34.83695 -34.39517 -32.90896 -32.04032 -31.14588 -30.72388 -30.12451 -29.89336 -27.55197 -27.28457 -26.29320 -26.14220 -23.50839 -22.79708 -22.08588 -20.79137 -19.64507 -19.23946 -18.59885 -18.44932 -18.15468 -16.82357 -16.54563 -16.40703 -16.24281 -15.61179 -15.17833 -14.75706 -14.63329 -14.55282 -14.31983 -14.18905 -14.17999 -13.89778 -13.89405 -13.63363 -13.54039 -13.33415 -13.18484 -13.07030 -12.91152 -12.79772 -12.67762 -12.64008 -12.27059 -12.03874 -11.89972 -11.71278 -11.47327 -11.26029 -10.90631 -10.67853 -10.52909 -10.19778 -9.82711 -9.63681 -9.43706 -9.37147 -8.88567 -8.73328 -8.38270 -7.76815 -7.64397 -6.50549 -5.97071 -4.21320 -0.33889 0.64175 0.90040 2.30862 2.44967 2.59911 2.69964 2.72547 2.79572 2.96544 3.23016 3.27988 3.39510 3.55584 3.88838 3.92300 4.28569 4.40591 4.59781 4.61598 4.71529 4.87123 4.92086 5.09478 5.12941 5.18029 5.42059 5.59528 5.60678 5.67491 5.74717 5.77946 5.86213 5.91121 6.00135 6.03419 6.26823 6.30878 6.34769 6.40505 6.74582 6.94712 7.04344 7.14369 7.61098 8.09674 8.20256 8.54210 8.74541 9.34269 Molecular weight = 389.12amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.003180 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.981226 B = 8803.406627 C = 9710.211442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.071 3.929 3 N -0.297 5.297 4 N -0.342 5.342 5 C 0.178 3.822 6 C -0.099 4.099 7 C -0.099 4.099 8 C -0.085 4.085 9 C -0.169 4.169 10 C 0.512 3.488 11 F -0.177 7.177 12 F -0.175 7.175 13 F -0.174 7.174 14 C -0.065 4.065 15 C 0.136 3.864 16 C -0.070 4.070 17 C -0.218 4.218 18 C 0.062 3.938 19 O -0.785 6.785 20 Si 0.951 3.049 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.281 1.281 24 C 0.470 3.530 25 O -0.453 6.453 26 N -0.619 5.619 27 C 0.495 3.505 28 O -0.791 6.791 29 O -0.718 6.718 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.420 0.580 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.307 0.693 44 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 10.308 -0.823 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.097 4.097 3 N -0.117 5.117 4 N -0.120 5.120 5 C 0.085 3.915 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.104 4.104 9 C -0.171 4.171 10 C 0.458 3.542 11 F -0.159 7.159 12 F -0.157 7.157 13 F -0.155 7.155 14 C -0.085 4.085 15 C 0.015 3.985 16 C -0.128 4.128 17 C -0.229 4.229 18 C -0.043 4.043 19 O -0.726 6.726 20 Si 0.783 3.217 21 H -0.188 1.188 22 H -0.224 1.224 23 H -0.209 1.209 24 C 0.262 3.738 25 O -0.321 6.321 26 N -0.249 5.249 27 C 0.320 3.680 28 O -0.619 6.619 29 O -0.546 6.546 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.257 0.743 41 H 0.183 0.817 42 H 0.179 0.821 43 H 0.138 0.862 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.932 9.920 -2.181 10.200 hybrid contribution 1.224 0.854 1.029 1.813 sum 0.292 10.775 -1.152 10.840 Atomic orbital electron populations 1.20980 0.87652 1.04133 1.02939 1.22244 0.96259 0.91279 0.99871 1.77262 0.85266 1.22013 1.27176 1.45540 1.03502 1.03816 1.59166 1.17197 0.85967 0.91614 0.96729 1.21471 0.92773 1.00829 0.96872 1.20986 0.98007 0.93643 0.99097 1.21017 0.97212 0.97399 0.94745 1.19744 0.97953 0.96485 1.02884 1.18188 0.73558 0.83724 0.78742 1.93156 1.44614 1.82888 1.95213 1.93228 1.58322 1.72941 1.91186 1.93246 1.95350 1.91830 1.35061 1.20670 0.97475 0.93348 0.97003 1.20869 0.98000 0.81643 0.98025 1.20371 0.90899 0.98177 1.03373 1.20958 0.91280 0.97195 1.13418 1.22118 1.06742 0.88382 0.87107 1.95140 1.61910 1.64859 1.50738 0.86661 0.76576 0.77150 0.81350 1.18775 1.22417 1.20853 1.26349 0.75563 0.83749 0.88127 1.90571 1.33544 1.23635 1.84319 1.49260 1.37343 1.31230 1.07031 1.32130 0.72034 0.86251 0.77626 1.93523 1.45240 1.76551 1.46560 1.93575 1.49651 1.77676 1.33675 0.89944 0.90003 0.90520 0.83917 0.83832 0.84036 0.84040 0.90074 0.93271 0.88635 0.74254 0.81711 0.82142 0.86168 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 8.31 36.01 0.30 -1.21 16 2 C 0.07 1.39 6.97 -82.37 -0.57 0.81 16 3 N -0.30 -5.98 12.40 33.69 0.42 -5.57 16 4 N -0.34 -6.87 3.71 -6.98 -0.03 -6.90 16 5 C 0.18 3.00 6.11 -83.59 -0.51 2.49 16 6 C -0.10 -1.38 8.29 -39.40 -0.33 -1.71 16 7 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 8 C -0.09 -0.92 9.43 -39.55 -0.37 -1.29 16 9 C -0.17 -2.18 5.37 -104.65 -0.56 -2.75 16 10 C 0.51 6.36 3.32 36.00 0.12 6.48 16 11 F -0.18 -2.00 15.97 2.25 0.04 -1.96 16 12 F -0.18 -2.27 17.23 2.25 0.04 -2.23 16 13 F -0.17 -2.36 17.24 2.25 0.04 -2.32 16 14 C -0.06 -1.00 9.38 -39.40 -0.37 -1.37 16 15 C 0.14 3.01 6.69 -82.14 -0.55 2.46 16 16 C -0.07 -1.49 7.66 36.01 0.28 -1.21 16 17 C -0.22 -4.89 4.42 -105.03 -0.46 -5.35 16 18 C 0.06 1.47 0.51 -29.04 -0.01 1.45 16 19 O -0.79 -23.39 15.80 -55.11 -0.87 -24.26 16 20 Si 0.95 18.70 21.38 -169.99 -3.63 15.07 16 21 H -0.26 -5.19 6.64 56.52 0.38 -4.81 16 22 H -0.29 -4.20 5.82 56.52 0.33 -3.87 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.47 10.24 5.72 -10.99 -0.06 10.18 16 25 O -0.45 -11.21 16.01 -14.32 -0.23 -11.44 16 26 N -0.62 -10.08 4.78 -8.53 -0.04 -10.12 16 27 C 0.50 6.84 10.66 59.85 0.64 7.48 16 28 O -0.79 -18.86 17.78 -57.73 -1.03 -19.89 16 29 O -0.72 -18.00 17.39 -57.73 -1.00 -19.00 16 30 H 0.08 1.00 7.51 -51.93 -0.39 0.61 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.22 2.31 -51.93 -0.12 1.10 16 33 H 0.14 1.96 6.80 -52.49 -0.36 1.60 16 34 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 1.16 7.15 -52.49 -0.38 0.79 16 36 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.08 1.66 8.02 -51.93 -0.42 1.24 16 38 H 0.05 0.91 6.90 -51.93 -0.36 0.55 16 39 H 0.09 2.38 7.50 -51.93 -0.39 1.99 16 40 H 0.42 5.78 7.80 -40.82 -0.32 5.46 16 41 H 0.17 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.16 1.94 7.26 -51.93 -0.38 1.56 16 43 H 0.31 6.96 8.90 45.56 0.41 7.36 16 44 H 0.31 7.36 8.90 45.56 0.41 7.76 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -41.84 393.60 -6.12 -47.96 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -2.88 Total: 19.74 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -2.87 Total: 15.02 kcal Atomic # 7 Polarization: -22.94 SS G_CDS: 0.35 Total: -22.59 kcal Atomic # 8 Polarization: -71.47 SS G_CDS: -3.13 Total: -74.60 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.51 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -3.63 Total: 15.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -41.84 -6.12 -47.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585072924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.641 kcal (2) G-P(sol) polarization free energy of solvation -41.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds