Wall clock time and date at job start Thu Mar 26 2020 09:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30877 * 125.87938 * 2 1 4 4 N 1.40088 * 108.21346 * 180.29127 * 3 2 1 5 5 C 1.40188 * 126.04810 * 179.69638 * 4 3 2 6 6 C 1.38853 * 120.06521 * 221.07517 * 5 4 3 7 7 C 1.38102 * 119.93360 * 180.02562 * 6 5 4 8 8 C 1.38298 * 120.06637 * 359.97438 * 7 6 5 9 9 C 1.38263 * 120.13355 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.96614 * 180.02562 * 9 8 7 11 11 F 1.39903 * 109.47372 * 359.97438 * 10 9 8 12 12 F 1.39902 * 109.47103 * 119.99852 * 10 9 8 13 13 F 1.39902 * 109.46912 * 239.99914 * 10 9 8 14 14 C 1.38147 * 120.06468 * 359.76003 * 9 8 7 15 15 C 1.35219 * 107.89476 * 359.72057 * 4 3 2 16 16 C 1.50706 * 126.14306 * 180.02562 * 15 4 3 17 17 C 1.35315 * 107.71591 * 0.02562 * 15 4 3 18 18 C 1.50702 * 126.03675 * 180.02562 * 17 15 4 19 19 O 1.42899 * 109.46945 * 318.34357 * 18 17 15 20 20 Si 1.86305 * 109.46933 * 198.34891 * 18 17 15 21 21 H 1.48490 * 109.47190 * 50.20264 * 20 18 17 22 22 H 1.48505 * 109.46788 * 290.20164 * 20 18 17 23 23 H 1.48499 * 109.46801 * 170.20629 * 20 18 17 24 24 C 1.50696 * 109.47349 * 78.34584 * 18 17 15 25 25 O 1.21280 * 119.99907 * 236.13207 * 24 18 17 26 26 N 1.34776 * 119.99878 * 56.12712 * 24 18 17 27 27 C 1.46498 * 119.99955 * 184.76331 * 26 24 18 28 Xx 1.56996 * 109.47422 * 93.76089 * 27 26 24 29 28 O 1.41997 * 120.00719 * 154.64728 * 28 27 26 30 29 O 1.42006 * 119.99545 * 334.64456 * 28 27 26 31 30 H 1.09000 * 109.46738 * 262.84863 * 1 2 3 32 31 H 1.09000 * 109.46851 * 22.84044 * 1 2 3 33 32 H 1.08997 * 109.47163 * 142.83904 * 1 2 3 34 33 H 1.08002 * 120.03989 * 359.97438 * 6 5 4 35 34 H 1.08004 * 119.96618 * 180.02562 * 7 6 5 36 35 H 1.08001 * 119.93593 * 180.02562 * 8 7 6 37 36 H 1.07997 * 120.03403 * 180.25869 * 14 9 8 38 37 H 1.09003 * 109.46819 * 265.72215 * 16 15 4 39 38 H 1.09002 * 109.46745 * 25.71491 * 16 15 4 40 39 H 1.08996 * 109.47223 * 145.71691 * 16 15 4 41 40 H 0.97004 * 120.00372 * 4.76546 * 26 24 18 42 41 H 1.09007 * 109.47325 * 213.75778 * 27 26 24 43 42 H 1.09001 * 109.47369 * 333.75918 * 27 26 24 44 43 H 0.96698 * 114.00782 * 179.97438 * 29 28 27 45 44 H 0.96703 * 114.00143 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0604 0.0000 4 7 3.6089 0.6353 -0.0068 5 6 4.7389 1.4650 -0.0150 6 6 5.8312 1.1448 -0.8101 7 6 6.9432 1.9638 -0.8157 8 6 6.9693 3.1021 -0.0307 9 6 5.8827 3.4241 0.7613 10 6 5.9150 4.6657 1.6147 11 9 7.1380 5.3216 1.4378 12 9 4.8701 5.5169 1.2393 13 9 5.7669 4.3109 2.9599 14 6 4.7654 2.6117 0.7669 15 6 3.6143 -0.7169 -0.0045 16 6 4.8349 -1.6008 -0.0094 17 6 2.3270 -1.1338 0.0028 18 6 1.8591 -2.5663 0.0081 19 8 2.6635 -3.3335 -0.8898 20 14 0.0787 -2.6400 -0.5358 21 1 -0.0852 -1.8759 -1.7984 22 1 -0.7853 -2.0478 0.5169 23 1 -0.3124 -4.0550 -0.7590 24 6 1.9829 -3.1300 1.4002 25 8 2.6339 -4.1352 1.5916 26 7 1.3702 -2.5171 2.4323 27 6 1.5749 -3.0034 3.7990 28 8 2.8024 -2.0756 5.8831 29 8 3.7498 -1.6027 3.6632 30 1 -0.3633 -0.1279 1.0197 31 1 -0.3633 0.9471 -0.3989 32 1 -0.3633 -0.8190 -0.6207 33 1 5.8117 0.2558 -1.4231 34 1 7.7930 1.7155 -1.4344 35 1 7.8398 3.7413 -0.0370 36 1 3.9153 2.8659 1.3826 37 1 5.0789 -1.8777 -1.0350 38 1 5.6745 -1.0633 0.4313 39 1 4.6341 -2.5007 0.5720 40 1 0.7936 -1.7540 2.2704 41 1 0.6608 -2.8618 4.3758 42 1 1.8279 -4.0633 3.7735 43 1 3.5591 -1.5654 6.2028 44 1 4.4282 -1.1307 4.1652 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585072924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 09:21:35 Heat of formation + Delta-G solvation = -73.297777 kcal Electronic energy + Delta-G solvation = -37888.631748 eV Core-core repulsion = 32286.574734 eV Total energy + Delta-G solvation = -5602.057014 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.120 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -51.28841 -48.79081 -48.75622 -42.82733 -41.11345 -40.35312 -36.35621 -35.72847 -34.53775 -33.11821 -32.56696 -32.46865 -31.96714 -31.41489 -29.09621 -28.65373 -27.74712 -27.21488 -24.99858 -23.89510 -23.29433 -22.27138 -20.93503 -20.72441 -19.60737 -19.46172 -19.41193 -18.29060 -17.88048 -17.63449 -17.53461 -16.90519 -16.54248 -16.15809 -15.85391 -15.65971 -15.43625 -15.33063 -15.18144 -15.15981 -15.12288 -14.96298 -14.90229 -14.79284 -14.60916 -14.50058 -14.32257 -14.07481 -14.02839 -13.89526 -13.75732 -13.42985 -13.33373 -13.13647 -12.82022 -12.51069 -12.44097 -12.22798 -12.10396 -11.77850 -11.43100 -10.94546 -10.80673 -10.68676 -10.60757 -10.46806 -9.80699 -9.64634 -9.18441 -8.49170 -7.88719 -6.10410 -1.50104 -0.43928 -0.19629 0.87075 1.12470 1.14659 1.22931 1.28719 1.43429 1.53497 1.73374 1.80052 2.20462 2.40628 2.53955 2.89557 3.27526 3.44446 3.51882 3.54393 3.58125 3.64840 3.78981 3.86400 3.89457 4.11020 4.18148 4.21218 4.26440 4.34163 4.51423 4.55943 4.58438 4.63856 4.67861 4.86201 4.87584 4.96630 5.02425 5.07845 5.34387 5.41214 5.61573 5.66214 6.12724 6.57595 6.60405 6.74476 6.92262 7.60516 Molecular weight = 389.12amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.003180 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.981226 B = 8803.406627 C = 9710.211442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.068 3.932 3 N -0.306 5.306 4 N -0.340 5.340 5 C 0.135 3.865 6 C -0.107 4.107 7 C -0.081 4.081 8 C -0.067 4.067 9 C -0.172 4.172 10 C 0.518 3.482 11 F -0.166 7.166 12 F -0.179 7.179 13 F -0.182 7.182 14 C -0.075 4.075 15 C 0.107 3.893 16 C -0.050 4.050 17 C -0.240 4.240 18 C 0.009 3.991 19 O -0.869 6.869 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.191 1.191 23 H -0.310 1.310 24 C 0.480 3.520 25 O -0.501 6.501 26 N -0.620 5.620 27 C 0.496 3.504 28 O -0.786 6.786 29 O -0.770 6.770 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.434 0.566 41 H 0.247 0.753 42 H 0.172 0.828 43 H 0.314 0.686 44 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 12.716 0.606 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 N -0.126 5.126 4 N -0.118 5.118 5 C 0.044 3.956 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.085 4.085 9 C -0.174 4.174 10 C 0.464 3.536 11 F -0.147 7.147 12 F -0.160 7.160 13 F -0.163 7.163 14 C -0.095 4.095 15 C -0.016 4.016 16 C -0.108 4.108 17 C -0.251 4.251 18 C -0.091 4.091 19 O -0.813 6.813 20 Si 0.805 3.195 21 H -0.196 1.196 22 H -0.115 1.115 23 H -0.239 1.239 24 C 0.273 3.727 25 O -0.373 6.373 26 N -0.248 5.248 27 C 0.323 3.677 28 O -0.616 6.616 29 O -0.599 6.599 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.204 0.796 35 H 0.196 0.804 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.274 0.726 41 H 0.263 0.737 42 H 0.189 0.811 43 H 0.145 0.855 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.417 12.407 -0.711 12.660 hybrid contribution 1.750 0.134 0.693 1.887 sum -0.666 12.542 -0.018 12.559 Atomic orbital electron populations 1.21259 0.84259 1.05417 1.05461 1.22826 0.98345 0.89710 0.99029 1.77177 0.85595 1.22541 1.27335 1.45650 1.04281 1.03279 1.58610 1.17632 0.86194 0.92542 0.99241 1.21637 0.93141 1.01373 0.96629 1.21451 0.97684 0.92300 0.98421 1.21493 0.97203 0.97215 0.92610 1.19866 0.97862 0.96314 1.03341 1.18054 0.73804 0.83519 0.78222 1.93177 1.43814 1.82621 1.95108 1.93222 1.58638 1.73007 1.91169 1.93232 1.95432 1.91929 1.35736 1.20558 0.98159 0.93614 0.97212 1.20992 0.98331 0.82937 0.99297 1.20067 0.91945 0.96532 1.02291 1.21015 0.92125 0.97390 1.14558 1.23104 1.10424 0.88217 0.87360 1.95053 1.65418 1.66830 1.53980 0.86336 0.73842 0.76053 0.83287 1.19577 1.11507 1.23885 1.25693 0.74706 0.83075 0.89210 1.90536 1.35755 1.25848 1.85121 1.48639 1.37253 1.31610 1.07269 1.33396 0.71027 0.85956 0.77271 1.93470 1.45480 1.76738 1.45953 1.93578 1.50870 1.78085 1.37359 0.85901 0.87626 0.90922 0.84509 0.79589 0.80406 0.85538 0.90558 0.91294 0.93207 0.72553 0.73715 0.81052 0.85450 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 8.31 71.24 0.59 -2.25 16 2 C 0.07 2.63 6.97 43.11 0.30 2.93 16 3 N -0.31 -12.42 12.40 -47.33 -0.59 -13.01 16 4 N -0.34 -14.20 3.71 -176.00 -0.65 -14.86 16 5 C 0.14 4.68 6.11 38.09 0.23 4.92 16 6 C -0.11 -2.99 8.29 22.38 0.19 -2.81 16 7 C -0.08 -1.51 10.04 22.25 0.22 -1.28 16 8 C -0.07 -1.24 9.43 22.29 0.21 -1.03 16 9 C -0.17 -4.20 5.37 -19.88 -0.11 -4.31 16 10 C 0.52 12.05 3.32 71.23 0.24 12.29 16 11 F -0.17 -3.28 15.97 44.97 0.72 -2.56 16 12 F -0.18 -4.42 17.23 44.97 0.77 -3.65 16 13 F -0.18 -4.78 17.24 44.97 0.78 -4.01 16 14 C -0.08 -2.34 9.38 22.39 0.21 -2.13 16 15 C 0.11 5.02 6.69 41.36 0.28 5.30 16 16 C -0.05 -2.33 7.66 71.24 0.55 -1.78 16 17 C -0.24 -11.12 4.42 -20.13 -0.09 -11.21 16 18 C 0.01 0.47 0.51 29.10 0.01 0.48 16 19 O -0.87 -55.93 15.80 -129.97 -2.05 -57.99 16 20 Si 0.98 37.08 21.38 68.60 1.47 38.55 16 21 H -0.27 -10.44 6.64 99.48 0.66 -9.78 16 22 H -0.19 -4.19 5.82 99.48 0.58 -3.61 16 23 H -0.31 -13.07 7.11 99.48 0.71 -12.36 16 24 C 0.48 21.47 5.72 87.66 0.50 21.97 16 25 O -0.50 -26.28 16.01 15.98 0.26 -26.03 16 26 N -0.62 -19.08 4.78 -299.28 -1.43 -20.51 16 27 C 0.50 12.17 10.66 127.77 1.36 13.53 16 28 O -0.79 -35.44 17.78 -127.47 -2.27 -37.71 16 29 O -0.77 -39.67 17.39 -127.47 -2.22 -41.89 16 30 H 0.12 2.22 7.51 -2.39 -0.02 2.20 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.03 2.31 -2.39 -0.01 2.03 16 33 H 0.14 3.92 6.80 -2.91 -0.02 3.90 16 34 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.18 2.04 7.15 -2.91 -0.02 2.02 16 36 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 37 H 0.08 3.48 8.02 -2.39 -0.02 3.46 16 38 H 0.07 2.78 6.90 -2.39 -0.02 2.76 16 39 H 0.05 2.75 7.50 -2.39 -0.02 2.73 16 40 H 0.43 10.46 7.80 -92.71 -0.72 9.73 16 41 H 0.25 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.17 3.77 7.26 -2.39 -0.02 3.75 16 43 H 0.31 13.67 8.90 -74.06 -0.66 13.01 16 44 H 0.31 15.15 8.90 -74.06 -0.66 14.49 16 Total: -1.00 -103.53 393.60 -0.83 -104.36 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -0.32 Total: 44.66 kcal Atomic # 6 Polarization: 29.93 SS G_CDS: 4.70 Total: 34.62 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -2.67 Total: -48.37 kcal Atomic # 8 Polarization: -157.33 SS G_CDS: -6.28 Total: -163.61 kcal Atomic # 9 Polarization: -12.48 SS G_CDS: 2.27 Total: -10.22 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 1.47 Total: 38.55 kcal Total: -103.53 -0.83 -104.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585072924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.066 kcal (2) G-P(sol) polarization free energy of solvation -103.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds