Wall clock time and date at job start Thu Mar 26 2020 12:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 117.00195 * 2 1 4 4 C 1.38568 * 120.07161 * 0.27267 * 3 2 1 5 5 C 1.38241 * 119.99736 * 180.25486 * 4 3 2 6 6 C 1.50700 * 119.92689 * 179.77122 * 5 4 3 7 7 C 1.53004 * 109.46955 * 277.63047 * 6 5 4 8 8 O 1.42895 * 109.47338 * 42.55415 * 7 6 5 9 9 Si 1.86307 * 109.46871 * 282.55552 * 7 6 5 10 10 H 1.48500 * 109.46993 * 253.82520 * 9 7 6 11 11 H 1.48498 * 109.46910 * 13.82187 * 9 7 6 12 12 H 1.48493 * 109.47017 * 133.82182 * 9 7 6 13 13 C 1.50694 * 109.47282 * 162.55991 * 7 6 5 14 14 O 1.21259 * 119.99680 * 240.05366 * 13 7 6 15 15 N 1.34771 * 120.00544 * 60.05067 * 13 7 6 16 16 C 1.46497 * 120.00153 * 152.30971 * 15 13 7 17 17 C 1.50702 * 109.47371 * 90.00213 * 16 15 13 18 18 C 1.38252 * 119.99920 * 270.02399 * 17 16 15 19 19 C 1.38222 * 119.99775 * 179.97438 * 18 17 16 20 20 C 1.38253 * 119.99933 * 359.97438 * 19 18 17 21 21 C 1.38209 * 120.00205 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.00170 * 179.97438 * 21 20 19 23 23 N 1.46902 * 109.47251 * 269.95407 * 22 21 20 24 24 C 1.38213 * 119.99560 * 89.99861 * 17 16 15 25 25 C 1.37705 * 120.00265 * 332.31415 * 15 13 7 26 26 C 1.50701 * 119.99953 * 68.76352 * 25 15 13 27 27 N 1.29160 * 119.99938 * 248.77405 * 25 15 13 28 28 C 1.38257 * 120.14921 * 359.48806 * 5 4 3 29 29 C 1.38243 * 120.14431 * 0.23596 * 28 5 4 30 30 C 1.38562 * 119.99766 * 0.02562 * 29 28 5 31 31 O 1.35995 * 120.07116 * 180.02562 * 30 29 28 32 32 H 1.09004 * 109.46734 * 60.00419 * 1 2 3 33 33 H 1.09004 * 109.46997 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47323 * 300.00201 * 1 2 3 35 35 H 1.07997 * 119.99980 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.47533 * 157.62919 * 6 5 4 37 37 H 1.09000 * 109.47595 * 37.62553 * 6 5 4 38 38 H 1.08997 * 109.47415 * 329.99950 * 16 15 13 39 39 H 1.09002 * 109.47396 * 210.00284 * 16 15 13 40 40 H 1.07998 * 119.99844 * 359.97438 * 18 17 16 41 41 H 1.07994 * 119.99840 * 180.02562 * 19 18 17 42 42 H 1.07997 * 119.99704 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.47068 * 29.95517 * 22 21 20 44 44 H 1.09004 * 109.47311 * 149.95583 * 22 21 20 45 45 H 1.00899 * 110.99692 * 179.97438 * 23 22 21 46 46 H 1.00896 * 110.99865 * 303.95087 * 23 22 21 47 47 H 1.07998 * 120.00741 * 359.72546 * 24 17 16 48 48 H 1.08995 * 109.47872 * 305.24513 * 26 25 15 49 49 H 1.09005 * 109.46839 * 65.24949 * 26 25 15 50 50 H 1.09002 * 109.46753 * 185.24055 * 26 25 15 51 51 H 0.96993 * 119.99921 * 359.97438 * 27 25 15 52 52 H 1.07999 * 119.92843 * 180.25562 * 28 5 4 53 53 H 1.08001 * 119.99846 * 180.02562 * 29 28 5 54 54 H 0.96699 * 114.00779 * 89.99598 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0057 5 6 1.9224 3.6057 0.0004 6 6 1.1017 4.8696 0.0014 7 6 0.6570 5.1900 -1.4271 8 8 0.2330 3.9889 -2.0748 9 14 2.0821 5.9337 -2.3690 10 1 1.8545 7.3909 -2.5419 11 1 3.3420 5.7156 -1.6139 12 1 2.1855 5.2872 -3.7019 13 6 -0.4864 6.1709 -1.3892 14 8 -1.5589 5.8705 -1.8685 15 7 -0.3170 7.3819 -0.8226 16 6 -1.1198 8.5209 -1.2746 17 6 -2.3863 8.5971 -0.4613 18 6 -3.5197 7.9269 -0.8826 19 6 -4.6811 7.9964 -0.1364 20 6 -4.7091 8.7358 1.0315 21 6 -3.5761 9.4058 1.4526 22 6 -3.6068 10.2122 2.7253 23 7 -4.0098 11.5918 2.4213 24 6 -2.4144 9.3368 0.7059 25 6 0.6108 7.5487 0.1812 26 6 2.0823 7.4518 -0.1291 27 7 0.2198 7.7881 1.3887 28 6 3.3030 3.6798 0.0000 29 6 4.0604 2.5233 0.0001 30 6 3.4360 1.2864 0.0000 31 8 4.1795 0.1477 0.0006 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 0.2147 2.3196 0.0106 36 1 1.7025 5.6927 0.3881 37 1 0.2240 4.7324 0.6329 38 1 -1.3713 8.3932 -2.3274 39 1 -0.5497 9.4410 -1.1463 40 1 -3.4976 7.3490 -1.7947 41 1 -5.5663 7.4725 -0.4652 42 1 -5.6165 8.7897 1.6147 43 1 -4.3216 9.7693 3.4188 44 1 -2.6152 10.2148 3.1779 45 1 -4.0384 12.1531 3.2593 46 1 -3.3996 12.0029 1.7310 47 1 -1.5277 9.8564 1.0376 48 1 2.2889 6.4993 -0.6169 49 1 2.3685 8.2689 -0.7914 50 1 2.6539 7.5174 0.7967 51 1 -0.7273 7.8507 1.5884 52 1 3.7909 4.6434 0.0000 53 1 5.1387 2.5840 0.0002 54 1 4.3942 -0.1815 0.8841 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184255873.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 12:47:14 Heat of formation + Delta-G solvation = -72.713223 kcal Electronic energy + Delta-G solvation = -39555.045343 eV Core-core repulsion = 34651.966206 eV Total energy + Delta-G solvation = -4903.079138 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.88675 -41.23895 -40.22703 -38.76889 -38.15233 -37.87759 -36.03987 -34.96182 -34.08535 -32.43258 -31.48710 -31.29800 -31.18854 -30.45579 -28.65313 -28.04048 -26.96942 -25.94187 -24.68206 -23.25006 -23.06719 -22.70654 -21.95213 -21.44959 -19.99095 -19.50362 -18.34509 -18.06401 -17.79902 -17.41050 -17.27837 -16.95767 -16.89709 -16.57724 -16.38125 -16.33876 -16.04543 -15.58544 -15.52626 -15.31438 -15.15838 -15.00785 -14.81405 -14.55281 -14.33273 -14.06962 -14.03118 -13.95134 -13.56899 -13.45597 -13.31570 -13.21904 -13.11809 -12.86326 -12.69437 -12.51051 -12.26112 -12.20167 -11.95943 -11.88489 -11.81562 -11.56413 -11.43960 -11.31311 -11.26933 -10.92069 -10.56759 -9.94521 -9.89216 -9.74046 -9.56329 -9.50528 -9.00621 -8.14840 -7.65492 0.25140 0.33683 0.38711 0.50420 0.95635 1.24131 1.30409 1.46147 1.87278 2.07377 2.31799 2.57219 2.79047 2.80853 3.31695 3.44979 3.60498 3.69465 3.81516 3.90768 3.91803 3.98927 4.05393 4.13650 4.21273 4.22968 4.25894 4.30053 4.31413 4.40913 4.48010 4.49423 4.54421 4.55789 4.60874 4.63569 4.68913 4.75609 4.84358 4.87976 4.90479 4.98452 4.99043 5.06809 5.19754 5.31535 5.35942 5.43659 5.45660 5.49354 5.54717 5.61049 5.81372 5.94440 5.98059 6.16110 6.28610 6.32363 6.58342 6.89872 6.96698 7.29987 7.92277 Molecular weight = 400.19amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.002465 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.337199 B =11357.313292 C =11883.401267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.323 6.323 3 C 0.073 3.927 4 C -0.165 4.165 5 C -0.025 4.025 6 C -0.112 4.112 7 C -0.046 4.046 8 O -0.885 6.885 9 Si 0.950 3.050 10 H -0.240 1.240 11 H -0.203 1.203 12 H -0.350 1.350 13 C 0.491 3.509 14 O -0.554 6.554 15 N -0.632 5.632 16 C 0.149 3.851 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.090 4.090 22 C 0.108 3.892 23 N -0.850 5.850 24 C -0.104 4.104 25 C 0.414 3.586 26 C -0.157 4.157 27 N -0.680 5.680 28 C -0.158 4.158 29 C -0.105 4.105 30 C 0.050 3.950 31 O -0.494 6.494 32 H 0.030 0.970 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.024 0.976 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.142 0.858 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.355 0.645 46 H 0.345 0.655 47 H 0.133 0.867 48 H 0.073 0.927 49 H 0.119 0.881 50 H 0.133 0.867 51 H 0.337 0.663 52 H 0.156 0.844 53 H 0.170 0.830 54 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 11.736 12.380 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.237 6.237 3 C 0.028 3.972 4 C -0.184 4.184 5 C -0.025 4.025 6 C -0.149 4.149 7 C -0.146 4.146 8 O -0.830 6.830 9 Si 0.777 3.223 10 H -0.164 1.164 11 H -0.127 1.127 12 H -0.283 1.283 13 C 0.284 3.716 14 O -0.429 6.429 15 N -0.373 5.373 16 C 0.027 3.973 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.150 4.150 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.022 4.022 23 N -0.382 5.382 24 C -0.123 4.123 25 C 0.133 3.867 26 C -0.215 4.215 27 N -0.300 5.300 28 C -0.176 4.176 29 C -0.123 4.123 30 C 0.005 3.995 31 O -0.305 6.305 32 H 0.049 0.951 33 H 0.151 0.849 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.159 0.841 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.151 0.849 48 H 0.090 0.910 49 H 0.137 0.863 50 H 0.152 0.848 51 H 0.155 0.845 52 H 0.174 0.826 53 H 0.188 0.812 54 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.082 11.342 11.644 16.545 hybrid contribution -1.701 -0.670 -0.460 1.885 sum 1.382 10.673 11.184 15.521 Atomic orbital electron populations 1.23152 0.77687 1.05035 1.00797 1.85988 1.22210 1.26365 1.89177 1.19728 0.92719 0.84591 1.00177 1.20908 0.99125 0.92490 1.05911 1.19647 0.94387 0.94303 0.94193 1.21882 0.97800 0.96052 0.99207 1.24637 0.97272 0.97186 0.95530 1.95029 1.83696 1.29223 1.75062 0.86798 0.80770 0.76619 0.78065 1.16427 1.12718 1.28270 1.24494 0.91347 0.81883 0.73925 1.90388 1.28633 1.76995 1.46841 1.46980 1.39851 1.10046 1.40414 1.20580 0.89587 0.89413 0.97733 1.20277 0.95345 0.98879 0.97330 1.21210 0.93764 0.97814 1.00189 1.21350 0.97949 0.99823 0.95917 1.21248 0.98711 0.95999 0.95788 1.20007 0.93098 0.98481 0.97450 1.20635 1.00046 0.89029 0.92509 1.58673 1.59737 1.02712 1.17047 1.20998 0.98488 0.99135 0.93721 1.22810 0.92356 0.88555 0.83009 1.22108 0.88797 1.03553 1.07000 1.69659 1.25656 1.18105 1.16570 1.21261 0.91982 0.99978 1.04344 1.21412 1.01597 0.89659 0.99591 1.17780 0.85356 0.87504 1.08906 1.84830 1.71273 1.39637 1.34739 0.95085 0.84914 0.92586 0.88273 0.86982 0.95676 0.90964 0.86400 0.88346 0.85168 0.84051 0.89517 0.93684 0.83061 0.84228 0.84897 0.90994 0.86289 0.84845 0.84535 0.82637 0.81234 0.74300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.81 113.37 1.11 2.09 16 2 O -0.32 -13.05 10.28 -79.61 -0.82 -13.87 16 3 C 0.07 3.17 6.70 22.57 0.15 3.32 16 4 C -0.17 -8.01 7.57 22.35 0.17 -7.84 16 5 C -0.02 -1.13 4.35 -19.86 -0.09 -1.22 16 6 C -0.11 -5.15 3.41 29.85 0.10 -5.05 16 7 C -0.05 -2.47 0.62 29.85 0.02 -2.45 16 8 O -0.88 -62.56 15.43 -129.94 -2.00 -64.56 16 9 Si 0.95 42.79 20.87 68.60 1.43 44.22 16 10 H -0.24 -8.72 6.23 99.48 0.62 -8.10 16 11 H -0.20 -7.00 5.07 99.48 0.50 -6.49 16 12 H -0.35 -19.57 7.11 99.48 0.71 -18.86 16 13 C 0.49 25.55 5.62 87.66 0.49 26.04 16 14 O -0.55 -33.51 14.94 16.08 0.24 -33.27 16 15 N -0.63 -24.70 2.21 -633.00 -1.40 -26.10 16 16 C 0.15 4.91 5.42 85.63 0.46 5.37 16 17 C -0.12 -3.77 5.20 -19.87 -0.10 -3.87 16 18 C -0.11 -3.98 9.03 22.27 0.20 -3.78 16 19 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 20 C -0.10 -2.51 9.70 22.27 0.22 -2.29 16 21 C -0.09 -2.13 5.39 -19.87 -0.11 -2.23 16 22 C 0.11 1.86 6.91 85.56 0.59 2.45 16 23 N -0.85 -12.60 9.61 -190.00 -1.83 -14.43 16 24 C -0.10 -2.70 7.48 22.27 0.17 -2.53 16 25 C 0.41 13.49 4.64 137.64 0.64 14.12 16 26 C -0.16 -4.15 6.48 71.24 0.46 -3.69 16 27 N -0.68 -20.84 13.92 -49.50 -0.69 -21.53 16 28 C -0.16 -5.75 8.43 22.28 0.19 -5.56 16 29 C -0.10 -3.44 9.98 22.35 0.22 -3.22 16 30 C 0.05 1.85 6.72 22.57 0.15 2.00 16 31 O -0.49 -15.58 13.29 -79.63 -1.06 -16.64 16 32 H 0.03 1.27 7.68 -2.38 -0.02 1.25 16 33 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.06 1.85 7.65 -2.39 -0.02 1.84 16 35 H 0.10 5.29 6.28 -2.91 -0.02 5.28 16 36 H 0.11 4.15 3.25 -2.39 -0.01 4.14 16 37 H 0.02 1.25 8.00 -2.39 -0.02 1.23 16 38 H 0.07 2.59 7.85 -2.39 -0.02 2.57 16 39 H 0.12 2.90 7.99 -2.39 -0.02 2.88 16 40 H 0.10 4.13 7.10 -2.91 -0.02 4.11 16 41 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 44 H 0.05 0.71 8.09 -2.38 -0.02 0.69 16 45 H 0.35 3.63 9.08 -89.69 -0.81 2.82 16 46 H 0.35 4.87 8.98 -89.70 -0.81 4.06 16 47 H 0.13 2.93 7.89 -2.91 -0.02 2.91 16 48 H 0.07 2.35 0.86 -2.39 0.00 2.35 16 49 H 0.12 2.45 7.31 -2.38 -0.02 2.44 16 50 H 0.13 2.59 8.11 -2.39 -0.02 2.57 16 51 H 0.34 10.66 6.42 -92.71 -0.60 10.06 16 52 H 0.16 4.50 6.84 -2.91 -0.02 4.48 16 53 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 54 H 0.40 8.08 9.06 -74.06 -0.67 7.41 16 Total: -1.00 -91.22 421.32 -2.26 -93.48 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -1.41 Total: 44.79 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.27 Total: 7.90 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -3.92 Total: -62.05 kcal Atomic # 8 Polarization: -124.71 SS G_CDS: -3.64 Total: -128.35 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.43 Total: 44.22 kcal Total: -91.22 -2.26 -93.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184255873.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.767 kcal (2) G-P(sol) polarization free energy of solvation -91.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds