Wall clock time and date at job start Thu Mar 26 2020 07:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21280 * 1 3 3 N 1.34779 * 120.00089 * 2 1 4 4 C 1.46494 * 120.00093 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47209 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.46833 * 65.00230 * 5 4 3 7 Xx 1.41998 * 113.99849 * 186.05466 * 6 5 4 8 7 C 1.56993 * 120.00395 * 354.23230 * 7 6 5 9 8 C 1.39384 * 120.11602 * 309.58758 * 8 7 6 10 9 C 1.37973 * 119.87674 * 179.78941 * 9 8 7 11 10 C 1.38370 * 120.11990 * 0.46552 * 10 9 8 12 11 C 1.38370 * 120.24252 * 359.78538 * 11 10 9 13 12 C 1.37980 * 120.11806 * 359.97438 * 12 11 10 14 13 C 1.57004 * 119.99685 * 174.22997 * 7 6 5 15 14 C 1.39369 * 120.11730 * 171.88625 * 14 7 6 16 15 C 1.37975 * 119.88053 * 179.79063 * 15 14 7 17 16 C 1.38380 * 120.11669 * 0.45971 * 16 15 14 18 17 C 1.38375 * 120.23985 * 359.79207 * 17 16 15 19 18 C 1.37979 * 120.11747 * 359.97256 * 18 17 16 20 19 C 1.50699 * 119.99974 * 179.97438 * 2 1 3 21 20 O 1.42904 * 109.47240 * 0.02562 * 20 2 1 22 21 Si 1.86301 * 109.47184 * 120.00395 * 20 2 1 23 22 H 1.48502 * 109.46861 * 60.00085 * 22 20 2 24 23 H 1.48503 * 109.47328 * 180.02562 * 22 20 2 25 24 H 1.48496 * 109.47299 * 300.00739 * 22 20 2 26 25 C 1.50701 * 109.47510 * 240.00634 * 20 2 1 27 26 C 1.38231 * 119.99949 * 274.72832 * 26 20 2 28 27 C 1.38236 * 119.99565 * 179.80729 * 27 26 20 29 28 C 1.38235 * 120.00432 * 0.39941 * 28 27 26 30 29 C 1.38233 * 119.99623 * 359.85606 * 29 28 27 31 30 C 1.38233 * 120.00392 * 359.95317 * 30 29 28 32 31 H 0.96996 * 119.99703 * 179.97438 * 3 2 1 33 32 H 1.09006 * 109.46967 * 60.00319 * 4 3 2 34 33 H 1.09000 * 109.47087 * 300.00650 * 4 3 2 35 34 H 1.08995 * 109.47469 * 305.00218 * 5 4 3 36 35 H 1.09005 * 109.47307 * 184.99915 * 5 4 3 37 36 H 1.08004 * 120.05609 * 0.02562 * 9 8 7 38 37 H 1.08003 * 119.93826 * 180.22561 * 10 9 8 39 38 H 1.08005 * 119.87923 * 179.76733 * 11 10 9 40 39 H 1.07998 * 119.94310 * 179.97438 * 12 11 10 41 40 H 1.08001 * 120.05983 * 179.97438 * 13 12 11 42 41 H 1.08005 * 120.06091 * 0.02562 * 15 14 7 43 42 H 1.07999 * 119.94180 * 180.23343 * 16 15 14 44 43 H 1.07998 * 119.88051 * 179.77019 * 17 16 15 45 44 H 1.07992 * 119.94194 * 179.97438 * 18 17 16 46 45 H 1.07997 * 120.05823 * 179.97438 * 19 18 17 47 46 H 1.07994 * 119.99972 * 359.97438 * 27 26 20 48 47 H 1.08007 * 119.99473 * 180.22897 * 28 27 26 49 48 H 1.07996 * 120.00064 * 179.82882 * 29 28 27 50 49 H 1.08002 * 119.99940 * 179.97438 * 30 29 28 51 50 H 1.07997 * 120.00422 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8867 1.1672 0.0000 4 6 1.1543 2.4359 -0.0006 5 6 2.1485 3.5988 0.0002 6 8 2.8917 3.5908 -1.2204 7 6 4.1044 5.5860 -0.0982 8 6 3.0103 6.3333 0.3345 9 6 3.1608 7.2397 1.3637 10 6 4.3973 7.4146 1.9597 11 6 5.4880 6.6791 1.5306 12 6 5.3475 5.7663 0.5054 13 6 4.9294 4.5728 -2.4830 14 6 5.8488 5.6117 -2.6165 15 6 6.7204 5.6250 -3.6860 16 6 6.6764 4.6144 -4.6302 17 6 5.7620 3.5833 -4.5054 18 6 4.8891 3.5577 -3.4371 19 6 1.9663 -1.3051 0.0006 20 8 1.0377 -2.3913 0.0005 21 14 3.0375 -1.4044 -1.5205 22 1 4.0025 -0.2757 -1.5208 23 1 3.7795 -2.6908 -1.5202 24 1 2.1839 -1.3261 -2.7330 25 6 2.8326 -1.3845 1.2311 26 6 4.0925 -0.8158 1.2273 27 6 4.8855 -0.8853 2.3574 28 6 4.4220 -1.5306 3.4886 29 6 3.1641 -2.1039 3.4906 30 6 2.3695 -2.0311 2.3619 31 1 2.8567 1.1671 0.0004 32 1 0.5273 2.4939 0.8892 33 1 0.5279 2.4934 -0.8907 34 1 2.8320 3.4920 0.8425 35 1 1.6064 4.5403 0.0893 36 1 2.0455 6.2002 -0.1325 37 1 2.3129 7.8167 1.7022 38 1 4.5116 8.1279 2.7625 39 1 6.4510 6.8197 1.9988 40 1 6.1996 5.1931 0.1709 41 1 5.8815 6.4029 -1.8820 42 1 7.4358 6.4276 -3.7884 43 1 7.3579 4.6306 -5.4679 44 1 5.7316 2.7973 -5.2453 45 1 4.1756 2.7527 -3.3408 46 1 4.4561 -0.3149 0.3423 47 1 5.8685 -0.4376 2.3556 48 1 5.0427 -1.5872 4.3706 49 1 2.8021 -2.6085 4.3742 50 1 1.3869 -2.4794 2.3633 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142692228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:47:34 Heat of formation + Delta-G solvation = 124.597777 kcal Electronic energy + Delta-G solvation = -33370.682682 eV Core-core repulsion = 28993.972301 eV Total energy + Delta-G solvation = -4376.710380 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.159 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.69824 -40.00988 -39.75701 -39.47319 -36.40818 -34.39528 -33.49467 -32.29109 -32.00856 -31.73649 -31.44629 -30.98697 -30.65962 -29.15060 -25.97722 -23.78445 -23.44482 -23.25530 -22.95897 -22.88596 -22.72050 -22.16575 -20.71043 -18.14210 -17.97325 -17.58438 -17.20751 -16.93998 -16.65452 -16.00961 -15.91584 -15.84482 -15.74996 -15.70854 -15.55475 -15.18413 -14.84924 -14.80550 -14.54833 -14.51038 -14.19046 -14.08489 -13.89297 -13.85380 -13.71346 -13.33843 -13.26592 -13.19038 -12.94476 -12.77493 -12.42535 -12.36134 -12.20220 -12.13191 -12.09025 -11.75086 -11.43511 -10.94444 -10.17992 -10.14041 -10.04729 -9.99239 -9.91739 -9.71137 -9.44864 -9.40638 -9.07579 -8.39588 -7.82250 -5.48626 -2.09890 0.15741 0.16569 0.19647 0.21299 0.54951 0.64461 1.12093 1.25870 1.35994 1.90726 2.40550 2.62289 2.62769 2.66730 3.12042 3.79284 3.81055 3.83097 3.85924 4.12157 4.12821 4.13553 4.24509 4.25486 4.26012 4.26875 4.28669 4.30317 4.33499 4.37504 4.49103 4.52077 4.57594 4.62069 4.74927 4.79440 4.84299 4.91483 4.92514 4.95836 5.13472 5.24806 5.27079 5.27772 5.30863 5.35156 5.36153 5.40239 5.44195 5.66348 5.69565 5.70756 5.72146 5.73420 6.06107 6.30298 6.49538 6.73466 7.43094 7.85670 Molecular weight = 377.16amu Principal moments of inertia in cm(-1) A = 0.007400 B = 0.003019 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3782.632545 B = 9271.656532 C =10568.870183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.604 6.604 2 C 0.481 3.519 3 N -0.714 5.714 4 C 0.103 3.897 5 C 0.102 3.898 6 O -0.652 6.652 7 C 0.072 3.928 8 C -0.146 4.146 9 C -0.089 4.089 10 C -0.124 4.124 11 C -0.083 4.083 12 C -0.138 4.138 13 C 0.080 3.920 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.124 4.124 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.029 4.029 20 O -0.901 6.901 21 Si 0.968 3.032 22 H -0.228 1.228 23 H -0.265 1.265 24 H -0.310 1.310 25 C -0.090 4.090 26 C -0.161 4.161 27 C -0.107 4.107 28 C -0.130 4.130 29 C -0.125 4.125 30 C -0.127 4.127 31 H 0.402 0.598 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.013 0.987 35 H 0.041 0.959 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.172 0.828 44 H 0.157 0.843 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.164 0.836 48 H 0.164 0.836 49 H 0.139 0.861 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.607 29.937 0.959 39.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.485 6.485 2 C 0.271 3.729 3 N -0.370 5.370 4 C -0.021 4.021 5 C 0.019 3.981 6 O -0.599 6.599 7 C 0.069 3.931 8 C -0.163 4.163 9 C -0.107 4.107 10 C -0.142 4.142 11 C -0.100 4.100 12 C -0.156 4.156 13 C 0.079 3.921 14 C -0.152 4.152 15 C -0.103 4.103 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.156 4.156 19 C -0.129 4.129 20 O -0.848 6.848 21 Si 0.793 3.207 22 H -0.153 1.153 23 H -0.190 1.190 24 H -0.238 1.238 25 C -0.091 4.091 26 C -0.179 4.179 27 C -0.125 4.125 28 C -0.148 4.148 29 C -0.142 4.142 30 C -0.145 4.145 31 H 0.238 0.762 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.197 0.803 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.202 0.798 43 H 0.190 0.810 44 H 0.174 0.826 45 H 0.136 0.864 46 H 0.143 0.857 47 H 0.181 0.819 48 H 0.181 0.819 49 H 0.157 0.843 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 25.223 29.683 0.033 38.953 hybrid contribution -2.308 -1.424 0.010 2.712 sum 22.915 28.259 0.043 36.382 Atomic orbital electron populations 1.90349 1.17350 1.88436 1.52347 1.23719 0.88971 0.87303 0.72879 1.46180 1.10336 1.04892 1.75569 1.22115 0.95984 0.85522 0.98490 1.21602 0.91776 0.91589 0.93162 1.94820 1.62573 1.71652 1.30808 1.32135 0.93336 0.82232 0.85400 1.21657 0.99827 0.96525 0.98318 1.21625 1.00072 0.96288 0.92712 1.21879 0.91779 0.99981 1.00546 1.21753 1.01512 0.93274 0.93464 1.21869 0.96287 1.00731 0.96673 1.32400 0.83887 0.94850 0.80964 1.22160 0.93944 0.98555 1.00553 1.21862 0.97387 0.99883 0.91149 1.21861 0.98415 0.93232 1.00599 1.21635 0.93938 1.00573 0.95266 1.21558 1.00958 0.99997 0.93136 1.23423 0.98334 0.90493 1.00642 1.94934 1.56543 1.40209 1.93069 0.85945 0.76497 0.79966 0.78286 1.15290 1.18960 1.23767 1.21080 0.95465 0.96019 0.96534 1.21318 0.93926 1.02023 1.00616 1.21448 1.00279 0.98845 0.91929 1.21450 0.95341 0.98443 0.99519 1.21417 0.95400 1.00412 0.97015 1.20992 0.99645 0.99759 0.94150 0.76205 0.93922 0.95461 0.96958 0.94151 0.84635 0.81808 0.81189 0.80313 0.82681 0.82151 0.79827 0.81038 0.82579 0.86429 0.85667 0.81880 0.81870 0.84321 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.60 -45.84 16.50 16.01 0.26 -45.58 16 2 C 0.48 32.07 6.00 87.66 0.53 32.59 16 3 N -0.71 -39.19 5.02 -463.07 -2.33 -41.52 16 4 C 0.10 5.13 6.06 86.38 0.52 5.65 16 5 C 0.10 4.12 5.04 71.98 0.36 4.48 16 6 O -0.65 -27.88 13.31 -148.98 -1.98 -29.86 16 7 C 0.07 1.52 7.20 22.82 0.16 1.68 16 8 C -0.15 -2.76 8.40 22.48 0.19 -2.57 16 9 C -0.09 -1.01 10.03 22.24 0.22 -0.79 16 10 C -0.12 -0.87 10.04 22.33 0.22 -0.64 16 11 C -0.08 -0.58 10.03 22.24 0.22 -0.36 16 12 C -0.14 -1.80 8.42 22.48 0.19 -1.61 16 13 C 0.08 1.90 9.45 22.82 0.22 2.11 16 14 C -0.13 -1.81 9.15 22.48 0.21 -1.60 16 15 C -0.09 -0.69 10.04 22.24 0.22 -0.47 16 16 C -0.12 -1.20 10.04 22.34 0.22 -0.97 16 17 C -0.10 -1.61 10.04 22.24 0.22 -1.38 16 18 C -0.14 -3.55 9.76 22.48 0.22 -3.33 16 19 C -0.03 -1.94 0.72 29.10 0.02 -1.92 16 20 O -0.90 -74.29 16.04 -129.94 -2.08 -76.38 16 21 Si 0.97 54.75 24.18 68.60 1.66 56.40 16 22 H -0.23 -10.39 6.36 99.48 0.63 -9.76 16 23 H -0.26 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.31 -18.88 7.11 99.48 0.71 -18.17 16 25 C -0.09 -5.09 4.46 -19.86 -0.09 -5.18 16 26 C -0.16 -7.11 7.75 22.27 0.17 -6.94 16 27 C -0.11 -3.62 10.05 22.27 0.22 -3.40 16 28 C -0.13 -4.24 10.05 22.27 0.22 -4.01 16 29 C -0.12 -5.09 10.05 22.27 0.22 -4.87 16 30 C -0.13 -7.05 9.35 22.27 0.21 -6.84 16 31 H 0.40 20.14 6.27 -92.71 -0.58 19.56 16 32 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 35 H 0.04 1.44 5.36 -2.38 -0.01 1.43 16 36 H 0.14 2.97 6.45 -2.91 -0.02 2.96 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 39 H 0.18 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.16 1.61 7.91 -2.91 -0.02 1.59 16 41 H 0.16 1.42 6.42 -2.91 -0.02 1.40 16 42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 43 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.12 3.92 7.80 -2.91 -0.02 3.90 16 46 H 0.13 5.15 5.14 -2.91 -0.01 5.13 16 47 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 48 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 49 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 50 H 0.08 4.97 7.35 -2.91 -0.02 4.94 16 Total: -1.00 -119.88 426.99 1.51 -118.36 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.06 Total: 18.93 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.92 Total: -0.37 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -2.33 Total: -41.52 kcal Atomic # 8 Polarization: -148.01 SS G_CDS: -3.80 Total: -151.81 kcal Atomic # 14 Polarization: 54.75 SS G_CDS: 1.66 Total: 56.40 kcal Total: -119.88 1.51 -118.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142692228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.962 kcal (2) G-P(sol) polarization free energy of solvation -119.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -118.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds