Wall clock time and date at job start Thu Mar 26 2020 08:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46641 * 2 1 4 4 C 1.38363 * 119.85503 * 90.00435 * 3 2 1 5 5 C 1.37959 * 120.14399 * 180.02562 * 4 3 2 6 6 C 1.39580 * 119.85215 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.14180 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00201 * 322.22233 * 7 6 5 9 9 N 1.34773 * 119.99966 * 142.22632 * 7 6 5 10 10 C 1.46965 * 120.59310 * 174.02325 * 9 7 6 11 11 C 1.53373 * 108.63440 * 125.04872 * 10 9 7 12 12 N 1.46959 * 108.63579 * 49.42324 * 11 10 9 13 13 C 1.34777 * 120.59369 * 124.79560 * 12 11 10 14 14 O 1.21283 * 120.00117 * 185.48376 * 13 12 11 15 15 C 1.50696 * 120.00150 * 5.48180 * 13 12 11 16 16 O 1.42906 * 109.47182 * 297.54019 * 15 13 12 17 17 Si 1.86303 * 109.47360 * 57.54041 * 15 13 12 18 18 H 1.48503 * 109.46692 * 54.50776 * 17 15 13 19 19 H 1.48499 * 109.47331 * 174.51095 * 17 15 13 20 20 H 1.48505 * 109.46820 * 294.51335 * 17 15 13 21 21 C 1.50704 * 109.47204 * 177.54287 * 15 13 12 22 22 C 1.38236 * 119.99775 * 275.96575 * 21 15 13 23 23 C 1.38234 * 119.99949 * 179.78662 * 22 21 15 24 24 C 1.38234 * 120.00030 * 0.47110 * 23 22 21 25 25 C 1.50699 * 120.00151 * 179.78957 * 24 23 22 26 26 C 1.38243 * 119.99738 * 359.75939 * 24 23 22 27 27 C 1.38225 * 120.00072 * 0.03039 * 26 24 23 28 28 C 1.46965 * 118.81246 * 304.77417 * 12 11 10 29 29 C 1.46968 * 120.59380 * 354.30431 * 9 7 6 30 30 C 1.39571 * 119.71370 * 0.24728 * 6 5 4 31 31 C 1.37960 * 119.85111 * 359.51803 * 30 6 5 32 32 H 1.09005 * 109.47164 * 299.99708 * 1 2 3 33 33 H 1.08995 * 109.47270 * 60.00345 * 1 2 3 34 34 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.47253 * 239.99744 * 2 1 3 36 36 H 1.09007 * 109.46947 * 119.99445 * 2 1 3 37 37 H 1.07992 * 119.92600 * 0.02562 * 4 3 2 38 38 H 1.08002 * 120.07582 * 179.97438 * 5 4 3 39 39 H 1.08999 * 109.60998 * 244.78813 * 10 9 7 40 40 H 1.08995 * 109.61270 * 5.30237 * 10 9 7 41 41 H 1.09001 * 109.60911 * 289.67653 * 11 10 9 42 42 H 1.09003 * 109.60738 * 169.16775 * 11 10 9 43 43 H 1.07998 * 119.99829 * 359.97438 * 22 21 15 44 44 H 1.07995 * 120.00043 * 180.25124 * 23 22 21 45 45 H 1.08997 * 109.47044 * 269.96983 * 25 24 23 46 46 H 1.08992 * 109.47305 * 29.97548 * 25 24 23 47 47 H 1.09003 * 109.46885 * 149.97340 * 25 24 23 48 48 H 1.08001 * 119.99969 * 180.02562 * 26 24 23 49 49 H 1.08004 * 120.00333 * 179.97438 * 27 26 24 50 50 H 1.08997 * 109.61229 * 295.47829 * 28 12 11 51 51 H 1.09004 * 109.60838 * 174.96752 * 28 12 11 52 52 H 1.08994 * 109.61148 * 354.69376 * 29 9 7 53 53 H 1.08994 * 109.60993 * 115.20728 * 29 9 7 54 54 H 1.08005 * 120.07643 * 179.72766 * 30 6 5 55 55 H 1.07998 * 119.93078 * 180.22712 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2618 2.0702 1.2000 5 6 2.7211 3.3711 1.2070 6 6 2.9546 4.0319 -0.0001 7 6 3.4462 5.4263 -0.0001 8 8 3.0399 6.2140 0.8316 9 7 4.3449 5.8239 -0.9224 10 6 4.7442 7.2351 -1.0179 11 6 6.2715 7.3208 -0.9071 12 7 6.8651 6.3521 -1.8393 13 6 7.7600 6.7506 -2.7650 14 8 8.1681 5.9633 -3.5923 15 6 8.2534 8.1745 -2.7720 16 8 7.1563 9.0577 -3.0137 17 14 9.0204 8.5741 -1.1219 18 1 10.0733 7.5743 -0.8104 19 1 9.6244 9.9298 -1.1721 20 1 7.9749 8.5367 -0.0680 21 6 9.2834 8.3438 -3.8590 22 6 10.6027 8.0075 -3.6195 23 6 11.5467 8.1586 -4.6179 24 6 11.1733 8.6553 -5.8527 25 6 12.2033 8.8245 -6.9397 26 6 9.8549 8.9961 -6.0907 27 6 8.9101 8.8409 -5.0937 28 6 6.4658 4.9410 -1.7438 29 6 4.9384 4.8552 -1.8547 30 6 2.7165 3.3727 -1.2071 31 6 2.2619 2.0702 -1.2000 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.0812 1.5576 2.1332 38 1 2.8996 3.8771 2.1443 39 1 4.4236 7.6418 -1.9770 40 1 4.2862 7.8006 -0.2065 41 1 6.5782 7.0834 0.1116 42 1 6.6011 8.3270 -1.1660 43 1 10.8952 7.6237 -2.6533 44 1 12.5766 7.8920 -4.4321 45 1 12.6397 9.8212 -6.8747 46 1 12.9864 8.0763 -6.8179 47 1 11.7287 8.6985 -7.9128 48 1 9.5630 9.3838 -7.0556 49 1 7.8801 9.1075 -5.2794 50 1 6.7864 4.5341 -0.7848 51 1 6.9237 4.3755 -2.5554 52 1 4.6088 3.8491 -1.5959 53 1 4.6317 5.0926 -2.8733 54 1 2.8910 3.8800 -2.1445 55 1 2.0807 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025902030.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 08:43:12 Heat of formation + Delta-G solvation = -78.278295 kcal Electronic energy + Delta-G solvation = -37308.044977 eV Core-core repulsion = 32660.606482 eV Total energy + Delta-G solvation = -4647.438495 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 395.193 amu Computer time = 21.05 seconds Orbital eigenvalues (eV) -41.88371 -40.85693 -39.96762 -39.51986 -37.93557 -35.54388 -34.92083 -34.69127 -32.78757 -32.16742 -31.83022 -31.57645 -30.62652 -28.89143 -28.05007 -25.79585 -25.70462 -24.54272 -23.69460 -23.51797 -23.28324 -22.20901 -21.70897 -20.88670 -19.69722 -18.46029 -17.80457 -17.48074 -17.22327 -16.78272 -16.75857 -16.40875 -16.33858 -15.95252 -15.92099 -15.77067 -15.69467 -15.18128 -14.90080 -14.79392 -14.67921 -14.54671 -14.36833 -14.31589 -14.20392 -14.15379 -13.97000 -13.75112 -13.42378 -13.29243 -13.02457 -12.99787 -12.66011 -12.55742 -12.47484 -12.46241 -12.27083 -12.18313 -12.12077 -11.97101 -11.70604 -11.67845 -11.58441 -11.30904 -11.01891 -10.92403 -10.33501 -9.93872 -9.73713 -9.66703 -9.34232 -9.18749 -8.29791 -7.77869 -0.12768 0.36689 0.60718 0.68308 1.25311 1.38824 1.41531 1.56063 1.70229 1.83628 2.21663 2.52791 2.72958 3.09021 3.29465 3.71736 3.78966 3.83689 3.86798 3.97489 4.04357 4.05592 4.07638 4.14385 4.22968 4.28767 4.29047 4.36209 4.42221 4.47360 4.49206 4.54388 4.55115 4.62137 4.62774 4.66619 4.73961 4.82464 4.85166 4.86613 4.93343 4.94327 4.99313 5.00817 5.08894 5.12955 5.13672 5.23147 5.31047 5.33133 5.38261 5.42800 5.44637 5.62104 5.67532 5.73678 5.80515 5.91673 6.07950 6.20202 6.34067 6.52745 6.91291 7.37343 7.65146 Molecular weight = 395.19amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.001925 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.831710 B =14538.696001 C =15437.843626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.056 4.056 4 C -0.122 4.122 5 C -0.073 4.073 6 C -0.153 4.153 7 C 0.558 3.442 8 O -0.579 6.579 9 N -0.602 5.602 10 C 0.113 3.887 11 C 0.086 3.914 12 N -0.614 5.614 13 C 0.507 3.493 14 O -0.593 6.593 15 C -0.017 4.017 16 O -0.871 6.871 17 Si 0.940 3.060 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.242 1.242 21 C -0.081 4.081 22 C -0.157 4.157 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.098 4.098 26 C -0.131 4.131 27 C -0.109 4.109 28 C 0.088 3.912 29 C 0.093 3.907 30 C -0.092 4.092 31 C -0.121 4.121 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.136 0.864 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.097 0.903 52 H 0.135 0.865 53 H 0.073 0.927 54 H 0.137 0.863 55 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -17.046 3.369 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.140 4.140 5 C -0.092 4.092 6 C -0.156 4.156 7 C 0.349 3.651 8 O -0.460 6.460 9 N -0.334 5.334 10 C -0.010 4.010 11 C -0.037 4.037 12 N -0.349 5.349 13 C 0.300 3.700 14 O -0.475 6.475 15 C -0.117 4.117 16 O -0.819 6.819 17 Si 0.765 3.235 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.166 1.166 21 C -0.082 4.082 22 C -0.175 4.175 23 C -0.141 4.141 24 C -0.113 4.113 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.127 4.127 28 C -0.035 4.035 29 C -0.029 4.029 30 C -0.110 4.110 31 C -0.139 4.139 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.166 0.834 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.154 0.846 49 H 0.110 0.890 50 H 0.099 0.901 51 H 0.115 0.885 52 H 0.152 0.848 53 H 0.091 0.909 54 H 0.154 0.846 55 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.519 -16.658 4.085 18.017 hybrid contribution -0.383 0.721 -0.222 0.846 sum -5.902 -15.937 3.863 17.428 Atomic orbital electron populations 1.21754 0.94147 1.02608 1.01958 1.20676 0.96465 0.90754 1.04458 1.20475 0.95165 0.97345 0.92642 1.21244 0.99777 0.93642 0.99307 1.21251 0.96260 0.95117 0.96549 1.19756 1.06896 0.92756 0.96177 1.18937 0.78077 0.88563 0.79537 1.90725 1.59872 1.56224 1.39130 1.48083 1.41925 1.09097 1.34313 1.21790 0.94469 0.81968 1.02796 1.22649 0.92922 0.96212 0.91960 1.48041 1.43433 1.08562 1.34852 1.23191 0.76596 0.92036 0.78216 1.90425 1.60623 1.57072 1.39347 1.23175 0.97055 0.89540 1.01924 1.94960 1.40001 1.57322 1.89628 0.86560 0.76989 0.79168 0.80753 1.20426 1.20846 1.16640 1.21007 0.95000 0.95222 0.96955 1.21197 0.93570 1.02460 1.00229 1.21197 0.99562 1.00501 0.92811 1.20233 0.94919 0.99835 0.96310 1.20726 0.96379 1.03001 0.95349 1.21262 0.93213 1.01532 0.98923 1.20920 0.99089 0.99130 0.93571 1.22118 0.95038 0.82849 1.03485 1.22648 0.92388 0.94643 0.93266 1.21551 0.97287 0.95505 0.96668 1.21288 0.99525 0.93828 0.99274 0.92952 0.92896 0.90931 0.89471 0.89581 0.83160 0.85814 0.91768 0.88330 0.91558 0.87081 0.87048 0.83439 0.90232 0.90297 0.90856 0.84634 0.88988 0.90059 0.88462 0.84788 0.90903 0.84568 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.09 -0.76 6.06 29.85 0.18 -0.58 16 3 C -0.06 -0.79 5.14 -19.81 -0.10 -0.90 16 4 C -0.12 -1.98 9.68 22.23 0.22 -1.76 16 5 C -0.07 -1.63 9.63 22.53 0.22 -1.42 16 6 C -0.15 -3.93 5.22 -20.09 -0.10 -4.03 16 7 C 0.56 18.60 7.35 86.79 0.64 19.24 16 8 O -0.58 -23.17 16.30 -3.88 -0.06 -23.23 16 9 N -0.60 -20.38 2.95 -821.43 -2.42 -22.81 16 10 C 0.11 4.48 6.60 86.42 0.57 5.05 16 11 C 0.09 3.77 4.23 86.42 0.37 4.13 16 12 N -0.61 -27.75 2.81 -818.01 -2.30 -30.05 16 13 C 0.51 27.15 6.23 87.66 0.55 27.70 16 14 O -0.59 -33.37 15.45 -3.04 -0.05 -33.42 16 15 C -0.02 -0.98 0.59 29.10 0.02 -0.96 16 16 O -0.87 -56.89 14.75 -148.98 -2.20 -59.09 16 17 Si 0.94 46.01 22.32 68.60 1.53 47.54 16 18 H -0.28 -12.38 6.61 99.48 0.66 -11.72 16 19 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 20 H -0.24 -10.93 5.08 99.48 0.51 -10.42 16 21 C -0.08 -4.36 3.78 -19.86 -0.08 -4.44 16 22 C -0.16 -7.31 8.66 22.27 0.19 -7.11 16 23 C -0.12 -4.69 9.70 22.27 0.22 -4.47 16 24 C -0.11 -4.06 5.88 -19.86 -0.12 -4.18 16 25 C -0.10 -2.37 10.01 71.24 0.71 -1.66 16 26 C -0.13 -5.44 9.70 22.27 0.22 -5.22 16 27 C -0.11 -5.69 9.35 22.27 0.21 -5.49 16 28 C 0.09 3.06 6.60 86.42 0.57 3.63 16 29 C 0.09 2.73 5.02 86.42 0.43 3.16 16 30 C -0.09 -1.87 7.35 22.53 0.17 -1.70 16 31 C -0.12 -1.86 9.68 22.23 0.22 -1.65 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 36 H 0.09 0.59 8.08 -2.38 -0.02 0.57 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.12 2.87 8.04 -2.91 -0.02 2.84 16 39 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.10 3.85 6.99 -2.39 -0.02 3.83 16 41 H 0.07 2.67 7.66 -2.39 -0.02 2.65 16 42 H 0.11 5.68 3.26 -2.39 -0.01 5.67 16 43 H 0.11 4.98 5.80 -2.91 -0.02 4.96 16 44 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 47 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 48 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 49 H 0.09 5.30 7.32 -2.91 -0.02 5.28 16 50 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.10 3.47 6.99 -2.39 -0.02 3.45 16 52 H 0.13 3.01 4.52 -2.39 -0.01 3.00 16 53 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 54 H 0.14 2.65 6.35 -2.91 -0.02 2.63 16 55 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -80.54 428.19 1.91 -78.64 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 1.41 Total: 25.63 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 5.99 Total: 16.78 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -4.72 Total: -52.86 kcal Atomic # 8 Polarization: -113.43 SS G_CDS: -2.31 Total: -115.73 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.53 Total: 47.54 kcal Total: -80.54 1.91 -78.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025902030.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.358 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.05 seconds