Wall clock time and date at job start Thu Mar 26 2020 14:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00092 * 2 1 4 4 C 1.38233 * 119.99831 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99961 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99708 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47119 * 334.99731 * 6 5 4 8 8 Si 1.86302 * 109.46930 * 214.99952 * 6 5 4 9 9 H 1.48503 * 109.47076 * 300.00009 * 8 6 5 10 10 H 1.48502 * 109.47382 * 59.99815 * 8 6 5 11 11 H 1.48499 * 109.47205 * 180.02562 * 8 6 5 12 12 C 1.50696 * 109.47606 * 94.99843 * 6 5 4 13 13 O 1.21277 * 120.00281 * 240.00135 * 12 6 5 14 14 N 1.34774 * 119.99842 * 59.99621 * 12 6 5 15 15 C 1.46507 * 120.00311 * 180.02562 * 14 12 6 16 16 H 1.09001 * 109.51614 * 34.86906 * 15 14 12 17 17 C 1.53115 * 109.52609 * 154.99770 * 15 14 12 18 18 C 1.53038 * 109.27889 * 177.62117 * 17 15 14 19 19 N 1.46845 * 109.52242 * 300.82509 * 18 17 15 20 20 C 1.46903 * 110.99841 * 185.83964 * 19 18 17 21 21 C 1.50700 * 109.47220 * 170.00079 * 20 19 18 22 22 C 1.38384 * 119.92085 * 270.27583 * 21 20 19 23 23 C 1.38342 * 120.30513 * 180.23848 * 22 21 20 24 24 C 1.37974 * 120.14874 * 359.47959 * 23 22 21 25 25 C 1.39607 * 119.84392 * 0.25963 * 24 23 22 26 26 C 1.43205 * 120.14625 * 180.02562 * 25 24 23 27 27 N 9.83708 * 121.55485 * 59.65602 * 11 1 2 28 28 C 1.37922 * 119.92537 * 89.99756 * 21 20 19 29 29 C 1.46845 * 111.20222 * 61.73967 * 19 18 17 30 30 C 1.53038 * 109.52313 * 298.25793 * 29 19 18 31 31 C 1.38233 * 120.00421 * 0.25441 * 5 4 3 32 32 C 1.38233 * 119.99635 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47345 * 90.00434 * 1 2 3 34 34 H 1.09000 * 109.47695 * 210.00341 * 1 2 3 35 35 H 1.09000 * 109.47423 * 330.00243 * 1 2 3 36 36 H 1.07998 * 119.99982 * 359.97438 * 3 2 1 37 37 H 1.08000 * 119.99638 * 179.97438 * 4 3 2 38 38 H 0.97001 * 120.00212 * 0.02562 * 14 12 6 39 39 H 1.09006 * 109.50422 * 57.68467 * 17 15 14 40 40 H 1.08993 * 109.53783 * 297.58365 * 17 15 14 41 41 H 1.08997 * 109.46565 * 180.80783 * 18 17 15 42 42 H 1.08996 * 109.45795 * 60.84043 * 18 17 15 43 43 H 1.08994 * 109.47446 * 49.99600 * 20 19 18 44 44 H 1.09003 * 109.46889 * 289.99712 * 20 19 18 45 45 H 1.08005 * 119.85088 * 359.97438 * 22 21 20 46 46 H 1.08002 * 119.92903 * 179.76640 * 23 22 21 47 47 H 1.07999 * 120.07592 * 180.23562 * 24 23 22 48 48 H 1.07997 * 120.07966 * 0.04291 * 28 21 20 49 49 H 1.09002 * 109.46243 * 58.27059 * 29 19 18 50 50 H 1.09001 * 109.46738 * 178.23690 * 29 19 18 51 51 H 1.08998 * 109.50064 * 299.23830 * 30 29 19 52 52 H 1.09002 * 109.53624 * 179.13420 * 30 29 19 53 53 H 1.07989 * 120.00316 * 179.73177 * 31 5 4 54 54 H 1.08000 * 120.00336 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 5.7786 -0.0001 0.0005 7 8 6.2550 1.2209 -0.5689 8 14 6.3996 -1.4390 -1.0069 9 1 5.9045 -2.7079 -0.4152 10 1 5.9045 -1.3170 -2.4017 11 1 7.8846 -1.4394 -1.0065 12 6 6.2811 -0.1239 1.4159 13 8 6.9783 0.7476 1.8903 14 7 5.9555 -1.2032 2.1545 15 6 6.4434 -1.3233 3.5307 16 1 6.4823 -0.3360 3.9908 17 6 5.4994 -2.2243 4.3316 18 6 6.0459 -2.3940 5.7509 19 7 7.3871 -2.9890 5.6925 20 6 7.8868 -3.2943 7.0398 21 6 9.1435 -4.1193 6.9345 22 6 9.0616 -5.5002 6.8969 23 6 10.2104 -6.2655 6.8053 24 6 11.4461 -5.6552 6.7400 25 6 11.5357 -4.2624 6.7720 26 6 12.8149 -3.6222 6.7041 27 7 13.8301 -3.1147 6.6494 28 6 10.3722 -3.4962 6.8701 29 6 8.3230 -2.1191 4.9687 30 6 7.8444 -1.9412 3.5260 31 6 3.5805 -1.1973 -0.0053 32 6 2.1981 -1.1972 -0.0005 33 1 -0.3634 -0.0001 -1.0277 34 1 -0.3634 -0.8899 0.5139 35 1 -0.3634 0.8900 0.5138 36 1 1.6582 2.1324 -0.0004 37 1 4.1205 2.1324 0.0001 38 1 5.3980 -1.9004 1.7750 39 1 5.4305 -3.1994 3.8492 40 1 4.5101 -1.7690 4.3746 41 1 5.3835 -3.0467 6.3196 42 1 6.1014 -1.4203 6.2374 43 1 7.1300 -3.8535 7.5899 44 1 8.1053 -2.3648 7.5655 45 1 8.0965 -5.9830 6.9436 46 1 10.1396 -7.3429 6.7802 47 1 12.3420 -6.2536 6.6647 48 1 10.4345 -2.4183 6.8957 49 1 8.3679 -1.1465 5.4589 50 1 9.3144 -2.5719 4.9693 51 1 7.8124 -2.9118 3.0310 52 1 8.5306 -1.2831 2.9929 53 1 4.1204 -2.1325 -0.0097 54 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000650381956.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 14:18:24 Heat of formation + Delta-G solvation = -42.644986 kcal Electronic energy + Delta-G solvation = -35946.256906 eV Core-core repulsion = 31425.393729 eV Total energy + Delta-G solvation = -4520.863178 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 392.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.14619 -40.62849 -39.90673 -39.09122 -37.58879 -36.03760 -34.93085 -33.47413 -32.28109 -32.05647 -31.88304 -31.61532 -31.16246 -28.20227 -27.03779 -25.31878 -24.97677 -24.03866 -23.49303 -23.35317 -22.39900 -21.82072 -21.16666 -20.34259 -19.22522 -17.89839 -17.43950 -17.15904 -16.86836 -16.62931 -16.46361 -16.33905 -15.95404 -15.78581 -15.52713 -15.35591 -15.15068 -15.09603 -14.89214 -14.61605 -14.45309 -14.34845 -14.22067 -14.16144 -14.14119 -13.96261 -13.65175 -13.46972 -13.23137 -13.04586 -13.00579 -12.87635 -12.71166 -12.43046 -12.31173 -12.26135 -12.19399 -12.15349 -12.01537 -11.90548 -11.70818 -11.62581 -11.48896 -11.33666 -10.79155 -9.92399 -9.81936 -9.77553 -9.67494 -9.26092 -9.18476 -8.34764 -7.75508 -0.14353 0.38249 0.57004 0.67092 1.18020 1.31646 1.43554 1.54978 1.92263 1.98905 2.43439 2.65645 2.75533 2.86733 3.10572 3.17792 3.73162 3.80409 3.92011 3.95218 4.09842 4.11839 4.13690 4.17330 4.26965 4.31818 4.36694 4.39444 4.42764 4.48044 4.53015 4.63512 4.65137 4.67681 4.73576 4.74961 4.79900 4.86318 4.90513 4.92732 4.97900 5.01961 5.04006 5.07921 5.09512 5.12702 5.22108 5.34650 5.35354 5.35929 5.45750 5.46275 5.63050 5.70671 5.78425 5.83036 5.94007 6.06302 6.10116 6.15635 6.34792 6.38829 6.77342 7.50842 7.94164 Molecular weight = 392.19amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.001958 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.664366 B =14295.706429 C =15325.913932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.109 4.109 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.031 4.031 7 O -0.906 6.906 8 Si 0.960 3.040 9 H -0.203 1.203 10 H -0.280 1.280 11 H -0.311 1.311 12 C 0.491 3.509 13 O -0.597 6.597 14 N -0.723 5.723 15 C 0.137 3.863 16 H 0.042 0.958 17 C -0.111 4.111 18 C 0.064 3.936 19 N -0.528 5.528 20 C 0.092 3.908 21 C -0.084 4.084 22 C -0.058 4.058 23 C -0.116 4.116 24 C -0.068 4.068 25 C -0.051 4.051 26 C 0.276 3.724 27 N -0.475 5.475 28 C -0.075 4.075 29 C 0.066 3.934 30 C -0.124 4.124 31 C -0.151 4.151 32 C -0.108 4.108 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.029 0.971 43 H 0.118 0.882 44 H 0.044 0.956 45 H 0.157 0.843 46 H 0.163 0.837 47 H 0.145 0.855 48 H 0.121 0.879 49 H 0.023 0.977 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.028 0.972 53 H 0.140 0.860 54 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -23.221 18.490 30.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.093 4.093 6 C -0.131 4.131 7 O -0.853 6.853 8 Si 0.785 3.215 9 H -0.128 1.128 10 H -0.206 1.206 11 H -0.239 1.239 12 C 0.282 3.718 13 O -0.477 6.477 14 N -0.379 5.379 15 C 0.032 3.968 16 H 0.060 0.940 17 C -0.149 4.149 18 C -0.064 4.064 19 N -0.253 5.253 20 C -0.035 4.035 21 C -0.085 4.085 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.089 4.089 25 C -0.055 4.055 26 C -0.038 4.038 27 N -0.151 5.151 28 C -0.096 4.096 29 C -0.063 4.063 30 C -0.163 4.163 31 C -0.169 4.169 32 C -0.125 4.125 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.047 0.953 43 H 0.136 0.864 44 H 0.062 0.938 45 H 0.175 0.825 46 H 0.181 0.819 47 H 0.163 0.837 48 H 0.139 0.861 49 H 0.041 0.959 50 H 0.102 0.898 51 H 0.101 0.899 52 H 0.047 0.953 53 H 0.157 0.843 54 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.149 -22.640 17.891 29.504 hybrid contribution 0.793 2.387 -0.184 2.522 sum -5.356 -20.253 17.707 27.430 Atomic orbital electron populations 1.20747 0.88220 1.03722 1.02976 1.20258 0.97835 0.92289 1.00493 1.21203 0.92443 0.99234 1.01787 1.20925 0.94619 0.97947 1.00582 1.21071 0.97170 0.94154 0.96937 1.23472 0.91658 1.06782 0.91167 1.94964 1.83561 1.29770 1.76979 0.86142 0.77705 0.76359 0.81328 1.12760 1.20563 1.23873 1.23464 0.78443 0.80080 0.89847 1.90387 1.40766 1.43018 1.73558 1.46333 1.54208 1.23318 1.14026 1.21065 0.94643 0.98605 0.82487 0.93964 1.21823 0.97657 0.99996 0.95444 1.22093 0.89961 0.98518 0.95796 1.61997 1.02117 1.44652 1.16491 1.21156 0.94723 0.98373 0.89227 1.19724 0.93269 0.94996 1.00518 1.21625 1.00326 0.92292 0.93423 1.21459 0.90811 1.01958 0.99143 1.21438 1.00204 0.91325 0.95910 1.16066 0.85104 0.93915 1.10376 1.26225 0.93004 0.92475 0.92144 1.81292 1.13050 1.09624 1.11127 1.21163 0.91303 0.99781 0.97329 1.21972 0.97025 0.94674 0.92621 1.21918 0.96106 1.00834 0.97452 1.21341 0.95735 0.96700 1.03144 1.21313 0.92758 0.98798 0.99645 0.90504 0.89479 0.91362 0.85395 0.90864 0.75825 0.88688 0.90187 0.86529 0.95314 0.86383 0.93790 0.82536 0.81901 0.83702 0.86108 0.95881 0.89797 0.89910 0.95295 0.84267 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 10.01 71.24 0.71 -1.26 16 2 C -0.11 -3.31 5.88 -19.87 -0.12 -3.43 16 3 C -0.13 -4.98 9.70 22.27 0.22 -4.77 16 4 C -0.12 -6.31 9.35 22.27 0.21 -6.10 16 5 C -0.09 -4.66 4.46 -19.87 -0.09 -4.75 16 6 C -0.03 -1.85 0.72 29.10 0.02 -1.83 16 7 O -0.91 -70.28 16.04 -129.94 -2.08 -72.36 16 8 Si 0.96 47.39 24.18 68.60 1.66 49.05 16 9 H -0.20 -7.02 6.36 99.48 0.63 -6.39 16 10 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.31 -16.86 7.11 99.48 0.71 -16.16 16 12 C 0.49 27.73 5.97 87.66 0.52 28.26 16 13 O -0.60 -39.93 16.16 16.02 0.26 -39.67 16 14 N -0.72 -29.49 4.61 -442.16 -2.04 -31.53 16 15 C 0.14 4.61 2.52 45.07 0.11 4.72 16 16 H 0.04 1.72 7.58 -2.39 -0.02 1.70 16 17 C -0.11 -2.37 5.57 30.65 0.17 -2.20 16 18 C 0.06 1.03 5.46 86.33 0.47 1.50 16 19 N -0.53 -8.82 4.65 -900.94 -4.19 -13.01 16 20 C 0.09 1.03 5.12 85.56 0.44 1.47 16 21 C -0.08 -0.99 4.88 -19.90 -0.10 -1.08 16 22 C -0.06 -0.44 9.69 22.33 0.22 -0.22 16 23 C -0.12 -0.78 10.03 22.23 0.22 -0.55 16 24 C -0.07 -0.71 9.76 22.54 0.22 -0.49 16 25 C -0.05 -0.80 5.73 -21.36 -0.12 -0.92 16 26 C 0.28 6.03 15.33 88.33 1.35 7.38 16 27 N -0.47 -13.20 18.54 19.01 0.35 -12.85 16 28 C -0.07 -1.13 7.57 22.54 0.17 -0.96 16 29 C 0.07 1.58 5.15 86.33 0.44 2.02 16 30 C -0.12 -3.95 5.68 30.65 0.17 -3.78 16 31 C -0.15 -5.65 7.75 22.27 0.17 -5.48 16 32 C -0.11 -3.17 9.70 22.27 0.22 -2.95 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.07 4.48 7.35 -2.91 -0.02 4.46 16 38 H 0.41 13.76 6.40 -92.71 -0.59 13.17 16 39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.12 1.09 8.01 -2.39 -0.02 1.07 16 42 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.12 0.69 7.93 -2.39 -0.02 0.67 16 44 H 0.04 0.54 8.06 -2.39 -0.02 0.52 16 45 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 46 H 0.16 0.17 8.06 -2.91 -0.02 0.14 16 47 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 48 H 0.12 1.96 7.95 -2.91 -0.02 1.94 16 49 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 50 H 0.08 1.91 5.75 -2.39 -0.01 1.90 16 51 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.14 4.38 5.14 -2.92 -0.01 4.36 16 54 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -101.79 438.40 0.62 -101.17 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.01 Total: 14.62 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 5.64 Total: 4.57 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -5.87 Total: -57.38 kcal Atomic # 8 Polarization: -110.21 SS G_CDS: -1.83 Total: -112.03 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.66 Total: 49.05 kcal Total: -101.79 0.62 -101.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000650381956.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.525 kcal (2) G-P(sol) polarization free energy of solvation -101.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds