Wall clock time and date at job start Thu Mar 26 2020 11:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38228 * 119.99780 * 2 1 4 4 C 1.38241 * 120.00087 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99880 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00122 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47167 * 209.99746 * 6 5 4 8 8 Si 1.86302 * 109.47242 * 329.99791 * 6 5 4 9 9 H 1.48495 * 109.47359 * 180.02562 * 8 6 5 10 10 H 1.48497 * 109.46890 * 300.00336 * 8 6 5 11 11 H 1.48501 * 109.46870 * 59.99672 * 8 6 5 12 12 C 1.50700 * 109.47069 * 89.99653 * 6 5 4 13 13 O 1.21286 * 119.99799 * 125.00314 * 12 6 5 14 14 N 1.34778 * 119.99857 * 304.99881 * 12 6 5 15 15 C 1.39926 * 119.99492 * 175.43772 * 14 12 6 16 16 C 1.38870 * 120.07388 * 36.12404 * 15 14 12 17 17 C 1.38114 * 119.93173 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.06955 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.92680 * 180.02562 * 18 17 16 20 20 H 1.08992 * 109.47706 * 352.73323 * 19 18 17 21 21 C 1.47203 * 109.46677 * 232.73438 * 19 18 17 22 22 N 9.89628 * 102.87183 * 289.48783 * 3 1 2 23 23 C 1.50697 * 109.46919 * 112.73678 * 19 18 17 24 24 C 1.38240 * 120.00295 * 67.73036 * 23 19 18 25 25 C 1.38236 * 120.00004 * 179.78591 * 24 23 19 26 26 C 1.38234 * 119.99759 * 0.44447 * 25 24 23 27 27 C 1.38231 * 120.00412 * 359.80877 * 26 25 24 28 28 C 1.38237 * 119.99925 * 248.00027 * 23 19 18 29 29 C 1.38284 * 120.14031 * 0.28058 * 18 17 16 30 30 C 1.38113 * 120.06685 * 359.48768 * 29 18 17 31 31 C 1.38237 * 119.99812 * 0.24524 * 5 4 3 32 32 C 1.38236 * 120.00160 * 359.48200 * 31 5 4 33 33 H 1.08996 * 109.47530 * 89.99803 * 1 2 3 34 34 H 1.09002 * 109.47004 * 209.99366 * 1 2 3 35 35 H 1.09000 * 109.47007 * 329.99430 * 1 2 3 36 36 H 1.08001 * 120.00513 * 359.97438 * 3 2 1 37 37 H 1.07994 * 119.99883 * 179.97438 * 4 3 2 38 38 H 0.96991 * 120.00509 * 355.43870 * 14 12 6 39 39 H 1.07998 * 120.03664 * 359.95848 * 16 15 14 40 40 H 1.07995 * 119.96414 * 180.02562 * 17 16 15 41 41 H 1.07994 * 119.99604 * 359.97438 * 24 23 19 42 42 H 1.08000 * 120.00053 * 180.27571 * 25 24 23 43 43 H 1.08001 * 119.99846 * 179.83193 * 26 25 24 44 44 H 1.07995 * 120.00178 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.99935 * 359.97438 * 28 23 19 46 46 H 1.07997 * 119.96015 * 179.71808 * 29 18 17 47 47 H 1.08004 * 120.03025 * 180.25617 * 30 29 18 48 48 H 1.08003 * 119.99883 * 179.72478 * 31 5 4 49 49 H 1.08001 * 120.00043 * 180.27600 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0001 -0.0028 7 8 6.2545 -1.1664 -0.6772 8 14 6.3990 1.5216 -0.8809 9 1 7.8840 1.5213 -0.8826 10 1 5.9029 1.5222 -2.2805 11 1 5.9045 2.7338 -0.1799 12 6 6.2821 -0.0004 1.4177 13 8 7.0526 -0.8610 1.7876 14 7 5.8762 0.9554 2.2768 15 6 6.2671 0.9011 3.6193 16 6 7.5324 0.4395 3.9575 17 6 7.9154 0.3876 5.2835 18 6 7.0405 0.7952 6.2738 19 6 7.4619 0.7378 7.7195 20 1 8.4252 0.2339 7.7975 21 6 6.4552 -0.0054 8.4948 22 7 5.6736 -0.5750 9.0949 23 6 7.5819 2.1380 8.2637 24 6 6.4516 2.9187 8.4185 25 6 6.5612 4.2015 8.9218 26 6 7.8022 4.7068 9.2617 27 6 8.9330 3.9281 9.1021 28 6 8.8229 2.6437 8.6029 29 6 5.7779 1.2504 5.9407 30 6 5.3907 1.3092 4.6162 31 6 3.5805 -1.1971 -0.0073 32 6 2.1982 -1.1972 -0.0010 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5137 35 1 -0.3633 0.8899 0.5139 36 1 1.6581 2.1325 -0.0004 37 1 4.1204 2.1325 -0.0010 38 1 5.3131 1.6808 1.9646 39 1 8.2162 0.1212 3.1845 40 1 8.8994 0.0292 5.5471 41 1 5.4827 2.5253 8.1490 42 1 5.6777 4.8098 9.0469 43 1 7.8881 5.7100 9.6525 44 1 9.9024 4.3228 9.3681 45 1 9.7064 2.0352 8.4783 46 1 5.0954 1.5637 6.7168 47 1 4.4059 1.6687 4.3565 48 1 4.1206 -2.1324 -0.0126 49 1 1.6582 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915180278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 11:23:52 Heat of formation + Delta-G solvation = 12.684758 kcal Electronic energy + Delta-G solvation = -33776.966038 eV Core-core repulsion = 29405.862485 eV Total energy + Delta-G solvation = -4371.103554 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 385.146 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.40037 -39.56263 -38.65897 -37.82121 -36.58178 -34.50094 -33.42159 -32.81374 -31.28853 -30.67659 -30.39898 -30.13385 -29.56047 -27.13583 -26.33291 -23.79451 -23.30666 -22.34850 -22.09186 -21.90179 -21.38126 -20.34536 -19.01671 -18.10955 -17.21649 -16.95166 -16.32015 -15.90510 -15.72876 -15.23604 -14.89981 -14.70902 -14.51944 -14.21139 -14.08895 -14.02478 -13.65973 -13.62842 -13.42350 -13.37902 -13.32962 -13.00484 -12.96317 -12.69005 -12.67002 -12.57246 -12.38327 -12.18034 -11.97753 -11.89181 -11.61490 -11.28516 -11.26152 -11.13166 -10.93152 -10.58141 -10.45255 -10.39816 -9.97482 -9.68339 -9.61619 -9.17494 -9.07854 -8.94215 -8.65287 -8.18914 -7.66683 -7.61305 -6.13219 -5.60322 0.99162 1.14714 1.47475 1.64197 2.05901 2.17019 2.59784 2.64703 3.10235 3.20804 3.31039 3.43662 3.66793 3.80962 3.91231 4.05789 4.39664 4.50373 4.59791 4.60673 4.71012 4.73298 4.85066 4.91175 5.12637 5.19724 5.26014 5.35350 5.38574 5.40021 5.61154 5.65745 5.66202 5.74561 5.74929 5.82810 5.85028 5.90502 6.06582 6.11502 6.15820 6.19325 6.25667 6.26841 6.30027 6.44931 6.46010 6.52580 6.68714 6.70523 6.79870 6.80787 6.87385 6.93948 7.18576 7.31672 7.40171 7.48447 7.64148 7.84531 8.20995 9.17086 9.78931 Molecular weight = 385.15amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.002291 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.159083 B =12220.753955 C =12935.583910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.156 4.156 5 C -0.064 4.064 6 C 0.026 3.974 7 O -0.805 6.805 8 Si 0.931 3.069 9 H -0.276 1.276 10 H -0.266 1.266 11 H -0.294 1.294 12 C 0.489 3.511 13 O -0.511 6.511 14 N -0.690 5.690 15 C 0.178 3.822 16 C -0.126 4.126 17 C -0.080 4.080 18 C -0.124 4.124 19 C 0.101 3.899 20 H 0.127 0.873 21 C 0.217 3.783 22 N -0.428 5.428 23 C -0.075 4.075 24 C -0.105 4.105 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.103 4.103 29 C -0.086 4.086 30 C -0.155 4.155 31 C -0.078 4.078 32 C -0.128 4.128 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.404 0.596 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.117 0.883 47 H 0.125 0.875 48 H 0.129 0.871 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 12.379 15.222 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.141 4.141 4 C -0.174 4.174 5 C -0.065 4.065 6 C -0.078 4.078 7 O -0.748 6.748 8 Si 0.758 3.242 9 H -0.201 1.201 10 H -0.190 1.190 11 H -0.224 1.224 12 C 0.280 3.720 13 O -0.383 6.383 14 N -0.340 5.340 15 C 0.081 3.919 16 C -0.147 4.147 17 C -0.099 4.099 18 C -0.126 4.126 19 C 0.079 3.921 20 H 0.145 0.855 21 C -0.101 4.101 22 N -0.103 5.103 23 C -0.076 4.076 24 C -0.123 4.123 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.121 4.121 29 C -0.105 4.105 30 C -0.176 4.176 31 C -0.096 4.096 32 C -0.146 4.146 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.240 0.760 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.135 0.865 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.952 11.244 15.670 19.310 hybrid contribution -0.243 0.461 -0.306 0.604 sum -1.194 11.705 15.365 19.352 Atomic orbital electron populations 1.20671 0.92210 1.01799 1.01432 1.19704 0.95160 0.93527 1.03353 1.20766 0.93958 0.96727 1.02609 1.21225 0.94330 0.98056 1.03769 1.21380 0.99053 0.92200 0.93857 1.22614 0.88901 1.07556 0.88715 1.95103 1.81227 1.30427 1.68014 0.86575 0.80297 0.74617 0.82687 1.20117 1.19040 1.22366 1.24365 0.79943 0.78576 0.89105 1.90454 1.33764 1.36735 1.77371 1.44647 1.53430 1.29341 1.06549 1.18146 0.92403 0.96196 0.85123 1.21362 0.95428 1.01081 0.96800 1.20815 0.98941 0.98232 0.91874 1.19027 0.95916 1.06104 0.91543 1.16524 0.94992 0.90943 0.89615 0.85493 1.28907 0.94205 0.93622 0.93343 1.81300 1.09821 1.09280 1.09881 1.19375 0.94195 0.93917 1.00114 1.21122 0.98296 0.94382 0.98516 1.21133 0.97810 0.95524 0.99079 1.21196 0.92744 0.99814 0.99815 1.21130 0.98712 0.94228 0.99631 1.21023 0.96530 0.96085 0.98467 1.20682 0.95323 0.98848 0.95620 1.20893 0.99149 1.05611 0.91929 1.21106 0.92474 0.99572 0.96414 1.21036 0.94550 0.96768 1.02252 0.92045 0.92274 0.92309 0.87125 0.86514 0.76027 0.83942 0.85584 0.86003 0.85917 0.86063 0.85795 0.85388 0.86474 0.85727 0.85337 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.12 -1.99 5.88 -104.63 -0.62 -2.61 16 3 C -0.12 -2.09 9.70 -39.58 -0.38 -2.47 16 4 C -0.16 -3.05 7.73 -39.58 -0.31 -3.36 16 5 C -0.06 -1.51 4.40 -104.63 -0.46 -1.97 16 6 C 0.03 0.70 0.70 -29.04 -0.02 0.68 16 7 O -0.80 -27.23 16.18 -55.09 -0.89 -28.13 16 8 Si 0.93 21.95 24.22 -169.99 -4.12 17.83 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -5.66 6.38 56.52 0.36 -5.30 16 12 C 0.49 12.45 5.79 -10.98 -0.06 12.39 16 13 O -0.51 -14.61 14.01 -14.31 -0.20 -14.82 16 14 N -0.69 -13.95 4.89 -9.86 -0.05 -14.00 16 15 C 0.18 3.21 6.28 -83.69 -0.53 2.69 16 16 C -0.13 -2.23 8.69 -39.39 -0.34 -2.57 16 17 C -0.08 -1.08 9.66 -39.61 -0.38 -1.47 16 18 C -0.12 -1.52 4.76 -104.59 -0.50 -2.02 16 19 C 0.10 0.98 2.65 -95.71 -0.25 0.73 16 20 H 0.13 0.89 7.65 -51.93 -0.40 0.49 16 21 C 0.22 2.64 13.22 -20.69 -0.27 2.37 16 22 N -0.43 -6.24 18.55 42.24 0.78 -5.46 16 23 C -0.07 -0.69 4.75 -104.62 -0.50 -1.19 16 24 C -0.11 -1.00 8.37 -39.58 -0.33 -1.33 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 27 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.10 -0.81 9.67 -39.58 -0.38 -1.19 16 29 C -0.09 -1.12 8.37 -39.61 -0.33 -1.46 16 30 C -0.15 -2.32 9.97 -39.39 -0.39 -2.71 16 31 C -0.08 -1.81 9.35 -39.58 -0.37 -2.18 16 32 C -0.13 -2.44 9.70 -39.58 -0.38 -2.82 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.07 5.25 -52.49 -0.28 1.80 16 38 H 0.40 7.15 7.08 -40.82 -0.29 6.87 16 39 H 0.14 2.86 6.31 -52.49 -0.33 2.53 16 40 H 0.13 1.33 7.96 -52.49 -0.42 0.91 16 41 H 0.12 1.14 5.68 -52.49 -0.30 0.85 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.72 7.96 -52.49 -0.42 0.30 16 46 H 0.12 1.32 5.67 -52.49 -0.30 1.03 16 47 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 48 H 0.13 3.32 7.48 -52.48 -0.39 2.92 16 49 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 411.93 15.07 6.21 6.21 Total: -1.00 -36.69 411.93 -11.66 -48.35 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.75 Total: 5.42 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -7.65 Total: -15.41 kcal Atomic # 7 Polarization: -20.19 SS G_CDS: 0.74 Total: -19.46 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.09 Total: -42.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.12 Total: 17.83 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.69 -11.66 -48.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915180278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.036 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds