Wall clock time and date at job start Thu Mar 26 2020 12:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46942 * 2 1 4 4 C 1.34947 * 126.03847 * 125.28566 * 3 2 1 5 5 C 1.35309 * 107.74759 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.03906 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47153 * 29.99890 * 6 5 4 8 8 Si 1.86304 * 109.46898 * 149.99398 * 6 5 4 9 9 H 1.48505 * 109.47018 * 60.00342 * 8 6 5 10 10 H 1.48506 * 109.47047 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47344 * 299.99961 * 8 6 5 12 12 C 1.50699 * 109.47180 * 269.99632 * 6 5 4 13 13 O 1.21286 * 120.00084 * 125.00192 * 12 6 5 14 14 N 1.34775 * 119.99912 * 305.00091 * 12 6 5 15 15 C 1.39926 * 120.00096 * 175.34839 * 14 12 6 16 16 C 1.38892 * 120.06656 * 35.32888 * 15 14 12 17 17 C 1.38093 * 119.92457 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.07301 * 0.02648 * 17 16 15 19 19 C 1.38263 * 120.13774 * 359.97438 * 18 17 16 20 Xx 1.81002 * 119.96058 * 179.97438 * 19 18 17 21 20 F 9.59373 * 52.33061 * 27.94683 * 2 1 3 22 21 F 1.60996 * 90.00402 * 315.00514 * 20 19 18 23 22 F 1.61002 * 89.99961 * 135.00075 * 20 19 18 24 23 F 1.60999 * 90.00087 * 45.00258 * 20 19 18 25 24 F 1.60999 * 89.99913 * 225.00258 * 20 19 18 26 25 C 1.38128 * 120.06971 * 359.68030 * 19 18 17 27 26 C 1.39866 * 107.92087 * 359.97438 * 5 4 3 28 27 N 1.30838 * 108.20477 * 359.71970 * 27 5 4 29 28 H 1.09003 * 109.47214 * 60.00548 * 1 2 3 30 29 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 31 30 H 1.08996 * 109.47673 * 299.99967 * 1 2 3 32 31 H 1.09000 * 109.46723 * 120.00011 * 2 1 3 33 32 H 1.09001 * 109.47025 * 239.99761 * 2 1 3 34 33 H 1.08000 * 126.12274 * 359.97432 * 4 3 2 35 34 H 0.97006 * 120.00035 * 355.34453 * 14 12 6 36 35 H 1.07997 * 120.04063 * 359.97438 * 16 15 14 37 36 H 1.08002 * 119.96438 * 180.02562 * 17 16 15 38 37 H 1.08001 * 119.93020 * 179.97438 * 18 17 16 39 38 H 1.08005 * 120.03277 * 180.02562 * 26 19 18 40 39 H 1.08001 * 125.89846 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8772 1.9197 0.8907 5 6 3.0737 3.2129 0.5444 6 6 3.9606 4.1978 1.2616 7 8 5.0492 3.5020 1.8720 8 14 4.6236 5.4395 0.0410 9 1 3.4923 6.1627 -0.5934 10 1 5.4971 6.4105 0.7478 11 1 5.4094 4.7354 -1.0039 12 6 3.1632 4.9123 2.3221 13 8 3.5450 4.9088 3.4733 14 7 2.0258 5.5552 1.9913 15 6 1.2346 6.1354 2.9889 16 6 1.8312 6.7129 4.1023 17 6 1.0475 7.2842 5.0853 18 6 -0.3300 7.2813 4.9623 19 6 -0.9269 6.7072 3.8552 20 9 -4.3328 6.7083 3.5589 21 9 -2.8628 6.2510 5.2382 22 9 -2.5978 7.1600 2.1606 23 9 -2.7709 8.2500 4.1521 24 9 -2.6896 5.1609 3.2468 25 6 -0.1483 6.1404 2.8650 26 6 2.3091 3.4736 -0.5974 27 7 1.6810 2.3746 -0.9284 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.3266 1.4099 1.7302 34 1 1.7557 5.6158 1.0615 35 1 2.9068 6.7144 4.1995 36 1 1.5108 7.7337 5.9512 37 1 -0.9408 7.7284 5.7328 38 1 -0.6152 5.6925 2.0002 39 1 2.2514 4.4175 -1.1189 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186079708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 12:07:14 Heat of formation + Delta-G solvation = 370.213061 kcal Electronic energy + Delta-G solvation = -33960.887197 eV Core-core repulsion = 28346.626709 eV Total energy + Delta-G solvation = -5614.260488 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.095 amu Computer time = 10.06 seconds Orbital eigenvalues (eV) -44.28672 -44.16071 -44.06532 -43.98055 -43.47455 -42.17979 -41.66786 -39.74391 -35.96775 -35.53205 -33.73406 -32.45552 -31.23227 -30.94695 -29.73666 -26.49391 -24.68594 -24.14425 -23.52591 -21.88008 -21.29389 -20.51664 -18.81109 -18.07375 -17.70988 -17.47201 -16.68459 -16.40058 -15.91645 -15.52368 -15.45368 -15.17962 -15.11815 -15.05439 -14.96607 -14.82737 -14.65217 -14.39490 -14.28049 -14.07802 -14.05513 -14.01053 -13.84308 -13.81582 -13.62593 -13.57429 -13.51105 -13.37771 -13.19309 -13.07456 -12.94580 -12.32186 -12.30291 -12.18046 -12.05304 -11.85622 -11.79494 -11.78802 -11.36943 -11.35063 -11.04050 -10.70369 -10.22007 -9.70151 -9.16358 -8.34188 -7.72862 -5.16335 -4.71590 -3.15716 -0.62882 -0.44038 1.03754 1.31582 1.40352 1.52997 1.67350 1.75554 1.84394 2.12904 2.16908 2.64344 2.88429 3.22532 3.38285 3.67099 3.68455 3.73171 4.09863 4.16159 4.21654 4.22565 4.39208 4.47565 4.63955 4.66436 4.79342 4.81661 4.83842 4.94206 4.98879 5.03000 5.22639 5.41525 5.49797 5.85184 6.24954 6.30779 6.83831 7.17553 7.84072 Molecular weight = 368.09amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.003660 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.191445 B = 7648.298873 C = 9391.086312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 N -0.378 5.378 4 C 0.065 3.935 5 C -0.243 4.243 6 C 0.025 3.975 7 O -0.887 6.887 8 Si 0.956 3.044 9 H -0.212 1.212 10 H -0.293 1.293 11 H -0.285 1.285 12 C 0.497 3.503 13 O -0.542 6.542 14 N -0.666 5.666 15 C 0.211 3.789 16 C -0.119 4.119 17 C -0.004 4.004 18 C -0.124 4.124 19 C 0.360 3.640 20 F -0.218 7.218 21 F -0.156 7.156 22 F -0.166 7.166 23 F -0.152 7.152 24 F -0.172 7.172 25 C -0.162 4.162 26 C 0.023 3.977 27 N -0.308 5.308 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.425 0.575 35 H 0.169 0.831 36 H 0.235 0.765 37 H 0.204 0.796 38 H 0.182 0.818 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 4.598 1.760 7.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.001 3.999 3 N -0.163 5.163 4 C -0.081 4.081 5 C -0.255 4.255 6 C -0.077 4.077 7 O -0.832 6.832 8 Si 0.779 3.221 9 H -0.137 1.137 10 H -0.220 1.220 11 H -0.210 1.210 12 C 0.290 3.710 13 O -0.417 6.417 14 N -0.315 5.315 15 C 0.113 3.887 16 C -0.139 4.139 17 C -0.021 4.021 18 C -0.142 4.142 19 C 0.354 3.646 20 F -0.218 7.218 21 F -0.155 7.155 22 F -0.165 7.165 23 F -0.151 7.151 24 F -0.171 7.171 25 C -0.183 4.183 26 C -0.163 4.163 27 N -0.130 5.130 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.175 0.825 34 H 0.264 0.736 35 H 0.186 0.814 36 H 0.251 0.749 37 H 0.220 0.780 38 H 0.199 0.801 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.729 4.190 1.222 7.202 hybrid contribution -0.820 -0.376 0.141 0.913 sum -6.549 3.814 1.363 7.700 Atomic orbital electron populations 1.21983 0.93051 1.03979 1.02146 1.21980 0.96560 0.76396 1.04930 1.48935 1.35511 1.10927 1.20916 1.22197 0.94411 0.95404 0.96076 1.21230 1.05931 0.97228 1.01139 1.22577 0.91379 0.98483 0.95237 1.95020 1.40503 1.71790 1.75923 0.86125 0.82139 0.76291 0.77504 1.13666 1.21986 1.21027 1.24546 0.78275 0.75502 0.92672 1.90421 1.68961 1.59935 1.22370 1.44505 1.22514 1.54450 1.10019 1.17773 0.84107 0.93892 0.92914 1.22233 1.04064 0.94589 0.93032 1.21885 0.84594 0.95764 0.99884 1.22335 0.93223 1.01015 0.97601 1.27397 0.31121 1.07591 0.98475 2.00000 1.99558 1.39913 1.82353 1.99923 1.95817 1.59281 1.60438 1.99918 1.90504 1.61525 1.64566 1.99918 1.92722 1.25976 1.96460 1.99921 1.94474 1.27741 1.94961 1.21392 0.88669 1.04516 1.03696 1.24155 0.96711 0.98665 0.96734 1.77046 1.24587 0.97245 1.14144 0.92377 0.88006 0.93603 0.87331 0.88810 0.82468 0.73618 0.81353 0.74893 0.77952 0.80138 0.77682 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 250. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 10.10 71.98 0.73 -2.50 16 2 C 0.12 2.90 7.23 86.38 0.62 3.52 16 3 N -0.38 -13.00 3.68 -348.07 -1.28 -14.28 16 4 C 0.06 2.68 10.93 83.54 0.91 3.59 16 5 C -0.24 -10.33 4.35 -20.15 -0.09 -10.42 16 6 C 0.03 1.21 0.77 29.10 0.02 1.23 16 7 O -0.89 -57.24 16.83 -129.99 -2.19 -59.43 16 8 Si 0.96 38.46 24.71 68.60 1.70 40.15 16 9 H -0.21 -5.78 6.83 99.48 0.68 -5.10 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.50 21.18 5.79 87.66 0.51 21.69 16 13 O -0.54 -26.10 13.96 15.94 0.22 -25.88 16 14 N -0.67 -20.35 4.90 -303.51 -1.49 -21.84 16 15 C 0.21 5.25 6.29 38.15 0.24 5.49 16 16 C -0.12 -2.46 8.70 22.39 0.19 -2.26 16 17 C 0.00 -0.05 10.04 22.25 0.22 0.18 16 18 C -0.12 -1.84 8.62 22.29 0.19 -1.65 16 19 C 0.36 8.50 4.82 22.25 0.11 8.61 16 20 F -0.22 -9.44 16.65 44.97 0.75 -8.70 16 21 F -0.16 -5.29 15.31 44.97 0.69 -4.60 16 22 F -0.17 -5.95 15.29 44.97 0.69 -5.26 16 23 F -0.15 -4.94 15.30 44.97 0.69 -4.26 16 24 F -0.17 -6.51 15.33 44.97 0.69 -5.82 16 25 C -0.16 -3.82 8.54 22.39 0.19 -3.63 16 26 C 0.02 0.79 10.06 85.24 0.86 1.65 16 27 N -0.31 -10.87 12.42 -57.02 -0.71 -11.58 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 2.20 8.07 -2.39 -0.02 2.18 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.16 6.81 8.06 -2.91 -0.02 6.79 16 34 H 0.42 10.84 7.50 -92.70 -0.70 10.14 16 35 H 0.17 4.14 6.24 -2.91 -0.02 4.12 16 36 H 0.23 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.20 2.16 7.39 -2.91 -0.02 2.14 16 38 H 0.18 4.29 7.40 -2.91 -0.02 4.27 16 39 H 0.21 5.50 6.79 -2.91 -0.02 5.48 16 Total: -1.00 -89.20 363.71 5.64 -83.55 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.17 Total: 12.43 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 4.71 Total: 25.50 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -3.47 Total: -47.69 kcal Atomic # 8 Polarization: -83.34 SS G_CDS: -1.97 Total: -85.31 kcal Atomic # 9 Polarization: -32.14 SS G_CDS: 3.50 Total: -28.64 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.70 Total: 40.15 kcal Total: -89.20 5.64 -83.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186079708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 453.767 kcal (2) G-P(sol) polarization free energy of solvation -89.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 364.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 370.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.06 seconds