Wall clock time and date at job start Thu Mar 26 2020 16:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 C 1.52996 * 109.47297 * 239.99265 * 2 1 3 5 5 C 1.53007 * 109.46980 * 119.99492 * 2 1 3 6 6 O 1.42900 * 109.47174 * 184.60271 * 5 2 1 7 7 Si 1.86295 * 109.47018 * 304.60524 * 5 2 1 8 8 H 1.48500 * 109.47191 * 180.02562 * 7 5 2 9 9 H 1.48498 * 109.47335 * 299.99995 * 7 5 2 10 10 H 1.48505 * 109.47569 * 60.00208 * 7 5 2 11 11 C 1.50697 * 109.46916 * 64.60537 * 5 2 1 12 12 O 1.21283 * 120.00264 * 354.95454 * 11 5 2 13 13 N 1.34774 * 120.00037 * 174.95594 * 11 5 2 14 14 C 1.46965 * 120.59921 * 174.19532 * 13 11 5 15 15 C 1.53372 * 108.63754 * 235.20479 * 14 13 11 16 16 N 1.46967 * 108.63175 * 310.57353 * 15 14 13 17 17 S 1.65599 * 120.59284 * 235.20093 * 16 15 14 18 18 O 1.42102 * 106.40328 * 336.46284 * 17 16 15 19 19 O 1.42098 * 106.40411 * 203.54029 * 17 16 15 20 20 C 1.76210 * 107.21523 * 89.99988 * 17 16 15 21 21 C 1.35537 * 120.04727 * 114.99685 * 20 17 16 22 22 C 1.39451 * 121.57894 * 180.02562 * 21 20 17 23 23 C 1.35546 * 121.57468 * 359.97438 * 22 21 20 24 24 C 1.41718 * 119.90181 * 0.02562 * 23 22 21 25 25 C 1.41716 * 120.04873 * 295.00027 * 20 17 16 26 26 N 1.32361 * 131.00515 * 0.02562 * 25 20 17 27 27 S 1.55542 * 109.41868 * 179.97438 * 26 25 20 28 28 N 1.32361 * 131.00332 * 179.97438 * 24 23 22 29 29 C 1.46965 * 118.81428 * 55.47718 * 16 15 14 30 30 C 1.46968 * 120.59420 * 354.17050 * 13 11 5 31 31 H 1.09001 * 109.47644 * 291.55730 * 1 2 3 32 32 H 1.09002 * 109.47246 * 51.55786 * 1 2 3 33 33 H 1.09002 * 109.47140 * 171.55551 * 1 2 3 34 34 H 1.09002 * 109.46952 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46913 * 299.99146 * 3 2 1 36 36 H 1.08991 * 109.47539 * 59.99943 * 3 2 1 37 37 H 1.08999 * 109.47657 * 300.00378 * 4 2 1 38 38 H 1.09002 * 109.46851 * 60.00741 * 4 2 1 39 39 H 1.09002 * 109.47356 * 180.02562 * 4 2 1 40 40 H 1.08998 * 109.61334 * 115.45444 * 14 13 11 41 41 H 1.09002 * 109.60717 * 354.94396 * 14 13 11 42 42 H 1.08993 * 109.60896 * 190.82847 * 15 14 13 43 43 H 1.08999 * 109.61197 * 70.31294 * 15 14 13 44 44 H 1.08000 * 119.21198 * 0.02562 * 21 20 17 45 45 H 1.07994 * 119.21142 * 180.27604 * 22 21 20 46 46 H 1.08001 * 120.04768 * 180.02562 * 23 22 21 47 47 H 1.08995 * 109.60919 * 64.26288 * 29 16 15 48 48 H 1.08999 * 109.61235 * 184.77752 * 29 16 15 49 49 H 1.08999 * 109.60766 * 244.54210 * 30 13 11 50 50 H 1.09003 * 109.60909 * 5.04900 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 8 3.4649 -0.6283 1.3047 7 14 1.3065 0.0720 2.7671 8 1 1.8019 -0.6275 3.9797 9 1 1.7075 1.5007 2.8219 10 1 -0.1743 -0.0246 2.7097 11 6 1.6329 -2.1711 1.1937 12 8 0.9206 -2.5670 0.2955 13 7 2.0603 -3.0279 2.1422 14 6 1.5711 -4.4133 2.1741 15 6 0.9760 -4.6912 3.5601 16 7 1.9402 -4.2569 4.5807 17 16 2.4654 -5.3096 5.7462 18 8 1.4638 -6.3108 5.8634 19 8 2.9000 -4.5133 6.8399 20 6 3.9007 -6.1133 5.1145 21 6 5.1040 -5.9179 5.7069 22 6 6.2602 -6.5373 5.2334 23 6 6.2337 -7.3634 4.1592 24 6 5.0097 -7.6135 3.4902 25 6 3.7986 -6.9647 3.9862 26 7 2.7545 -7.3070 3.2482 27 16 3.2127 -8.2782 2.1230 28 7 4.7333 -8.3673 2.4379 29 6 2.4252 -2.8699 4.5522 30 6 3.0245 -2.5936 3.1629 31 1 -0.3634 0.3776 0.9558 32 1 -0.3634 0.6389 -0.8049 33 1 -0.3633 -1.0165 -0.1509 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 1.6767 -1.7490 -1.2491 38 1 1.6768 -0.2076 -2.1391 39 1 3.1300 -0.7218 -1.2489 40 1 2.3985 -5.0979 1.9872 41 1 0.8028 -4.5476 1.4126 42 1 0.7844 -5.7587 3.6686 43 1 0.0452 -4.1362 3.6766 44 1 5.1689 -5.2671 6.5663 45 1 7.1983 -6.3581 5.7375 46 1 7.1441 -7.8305 3.8136 47 1 1.5952 -2.1882 4.7376 48 1 3.1908 -2.7343 5.3161 49 1 3.9553 -3.1486 3.0464 50 1 3.2162 -1.5261 3.0543 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265116717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 16:08:00 Heat of formation + Delta-G solvation = -77.447331 kcal Electronic energy + Delta-G solvation = -40488.903508 eV Core-core repulsion = 35542.960047 eV Total energy + Delta-G solvation = -4945.943461 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 427.111 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.04675 -41.08539 -38.97460 -38.55567 -37.56596 -37.06613 -36.98594 -35.14183 -34.85291 -32.78017 -31.67155 -31.58330 -28.76197 -28.35334 -27.92716 -27.89336 -25.76722 -24.76913 -23.91779 -23.81804 -22.80133 -21.08665 -20.71006 -19.79188 -19.23101 -18.85179 -18.56092 -18.04269 -17.43975 -17.24201 -17.00113 -16.90157 -16.71611 -16.35040 -16.10675 -15.84002 -15.52282 -15.41375 -15.03156 -14.87044 -14.50216 -14.36487 -14.01557 -13.94829 -13.65868 -13.64600 -13.54814 -13.35689 -13.22840 -13.17973 -13.11893 -13.04381 -12.85509 -12.74029 -12.64675 -12.57460 -12.38898 -12.30960 -12.10837 -12.06019 -11.95817 -11.74672 -11.61762 -11.58231 -11.39610 -11.17746 -10.89525 -10.52693 -10.29291 -9.95774 -9.86713 -9.25497 -7.94713 -7.54164 -1.47902 -0.76424 0.19328 0.28290 0.29495 0.63150 1.41271 1.48835 1.56562 1.65065 1.97526 2.19232 2.37198 2.56337 2.72854 2.93860 3.21788 3.51311 3.71239 3.77640 3.84907 3.90034 4.03082 4.12012 4.16663 4.26774 4.32250 4.35511 4.36847 4.40416 4.42083 4.56963 4.61756 4.75241 4.78728 4.86119 4.90607 4.94219 4.95639 5.00031 5.02251 5.02325 5.12361 5.13506 5.15908 5.25930 5.33983 5.37582 5.43392 5.62010 5.64295 5.81704 5.86632 5.95861 6.75806 7.55602 7.91290 Molecular weight = 427.11amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.003038 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.856286 B = 9214.679776 C =10115.763240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.017 4.017 6 O -0.871 6.871 7 Si 0.911 3.089 8 H -0.237 1.237 9 H -0.280 1.280 10 H -0.289 1.289 11 C 0.497 3.503 12 O -0.587 6.587 13 N -0.611 5.611 14 C 0.102 3.898 15 C 0.117 3.883 16 N -0.991 5.991 17 S 2.705 3.295 18 O -0.969 6.969 19 O -0.966 6.966 20 C -0.660 4.660 21 C 0.047 3.953 22 C -0.117 4.117 23 C -0.004 4.004 24 C 0.042 3.958 25 C 0.125 3.875 26 N -0.630 5.630 27 S 0.873 5.127 28 N -0.602 5.602 29 C 0.097 3.903 30 C 0.091 3.909 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.180 0.820 45 H 0.197 0.803 46 H 0.176 0.824 47 H 0.081 0.919 48 H 0.121 0.879 49 H 0.055 0.945 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -13.763 8.163 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C -0.177 4.177 4 C -0.171 4.171 5 C -0.118 4.118 6 O -0.820 6.820 7 Si 0.738 3.262 8 H -0.161 1.161 9 H -0.206 1.206 10 H -0.217 1.217 11 C 0.290 3.710 12 O -0.470 6.470 13 N -0.345 5.345 14 C -0.022 4.022 15 C -0.009 4.009 16 N -0.829 5.829 17 S 2.797 3.203 18 O -0.959 6.959 19 O -0.957 6.957 20 C -0.755 4.755 21 C 0.021 3.979 22 C -0.142 4.142 23 C -0.029 4.029 24 C -0.117 4.117 25 C -0.033 4.033 26 N -0.482 5.482 27 S 0.921 5.079 28 N -0.455 5.455 29 C -0.028 4.028 30 C -0.033 4.033 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.197 0.803 45 H 0.214 0.786 46 H 0.193 0.807 47 H 0.099 0.901 48 H 0.139 0.861 49 H 0.073 0.927 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.555 -14.731 7.555 16.751 hybrid contribution 1.513 0.502 0.070 1.595 sum 4.068 -14.228 7.625 16.647 Atomic orbital electron populations 1.22123 0.95763 1.02371 1.00495 1.20838 0.93935 0.95498 0.97825 1.21630 1.00747 0.95414 0.99927 1.21660 0.98687 1.00849 0.95889 1.24055 1.00318 0.88218 0.99214 1.94912 1.03915 1.91549 1.91575 0.87080 0.74905 0.80358 0.83810 1.16107 1.20634 1.21692 1.23611 0.76434 0.91766 0.79189 1.90298 1.41004 1.80320 1.35344 1.48020 1.45075 1.10888 1.30536 1.21807 0.99392 0.83171 0.97871 1.21856 0.91079 1.02034 0.85967 1.57544 1.56268 1.21772 1.47352 1.01467 0.73699 0.72463 0.72629 1.93545 1.57452 1.59369 1.85529 1.93544 1.83278 1.69237 1.49643 1.29995 1.20193 1.16835 1.08469 1.21387 0.89926 0.91105 0.95486 1.21419 1.00164 0.96080 0.96492 1.21116 0.94243 0.94992 0.92552 1.21660 0.98033 0.97937 0.94029 1.20357 0.87684 0.98902 0.96374 1.72072 1.35406 1.24593 1.16097 1.78330 0.89407 1.21243 1.18937 1.72131 1.24679 1.27787 1.20937 1.22413 1.01010 0.81098 0.98315 1.22524 0.90330 1.04720 0.85738 0.94078 0.92028 0.91926 0.94048 0.92111 0.94380 0.92543 0.93610 0.96039 0.92718 0.89171 0.86537 0.90344 0.80318 0.78626 0.80669 0.90066 0.86133 0.92664 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 7.77 71.98 0.56 -5.96 16 2 C -0.08 -3.89 0.35 -52.18 -0.02 -3.90 16 3 C -0.12 -5.44 7.89 71.98 0.57 -4.88 16 4 C -0.11 -5.54 8.00 71.98 0.58 -4.97 16 5 C -0.02 -0.92 0.12 29.85 0.00 -0.91 16 6 O -0.87 -53.31 14.12 -148.98 -2.10 -55.42 16 7 Si 0.91 42.44 20.83 68.60 1.43 43.87 16 8 H -0.24 -9.83 3.80 99.48 0.38 -9.45 16 9 H -0.28 -13.31 6.40 99.48 0.64 -12.67 16 10 H -0.29 -12.88 6.20 99.48 0.62 -12.27 16 11 C 0.50 25.19 5.53 87.66 0.49 25.67 16 12 O -0.59 -30.42 10.86 -3.04 -0.03 -30.45 16 13 N -0.61 -27.09 2.84 -817.14 -2.32 -29.41 16 14 C 0.10 3.75 6.58 86.42 0.57 4.32 16 15 C 0.12 3.74 6.33 86.42 0.55 4.28 16 16 N -0.99 -31.54 3.26 -511.44 -1.67 -33.21 16 17 S 2.71 80.21 5.61 -56.49 -0.32 79.89 16 18 O -0.97 -32.94 16.64 -128.00 -2.13 -35.07 16 19 O -0.97 -29.18 15.59 -128.00 -2.00 -31.17 16 20 C -0.66 -16.87 5.93 22.50 0.13 -16.73 16 21 C 0.05 0.85 9.43 21.94 0.21 1.06 16 22 C -0.12 -1.45 9.89 21.94 0.22 -1.24 16 23 C 0.00 -0.07 10.09 22.51 0.23 0.16 16 24 C 0.04 0.99 7.16 41.96 0.30 1.29 16 25 C 0.13 3.40 6.86 41.96 0.29 3.69 16 26 N -0.63 -17.10 9.57 -72.78 -0.70 -17.80 16 27 S 0.87 18.09 23.60 -56.49 -1.33 16.76 16 28 N -0.60 -14.12 11.44 -72.78 -0.83 -14.95 16 29 C 0.10 3.27 6.04 86.56 0.52 3.80 16 30 C 0.09 3.76 5.13 86.56 0.44 4.21 16 31 H 0.04 1.74 4.88 -2.39 -0.01 1.73 16 32 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 33 H 0.06 2.85 5.93 -2.39 -0.01 2.84 16 34 H 0.04 2.05 7.57 -2.39 -0.02 2.03 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.04 1.67 5.79 -2.39 -0.01 1.66 16 37 H 0.06 2.90 5.31 -2.39 -0.01 2.89 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.02 1.11 7.81 -2.39 -0.02 1.09 16 40 H 0.05 1.94 7.36 -2.39 -0.02 1.92 16 41 H 0.09 3.39 7.03 -2.39 -0.02 3.37 16 42 H 0.12 3.47 6.24 -2.39 -0.01 3.46 16 43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.18 2.39 7.22 -2.91 -0.02 2.37 16 45 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 46 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.08 2.78 6.19 -2.39 -0.01 2.77 16 48 H 0.12 3.41 7.08 -2.39 -0.02 3.39 16 49 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.12 5.66 3.17 -2.39 -0.01 5.65 16 Total: -1.00 -77.93 392.24 -5.08 -83.01 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.29 Total: 14.08 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.63 Total: 9.87 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -5.52 Total: -95.37 kcal Atomic # 8 Polarization: -145.85 SS G_CDS: -6.26 Total: -152.11 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.43 Total: 43.87 kcal Atomic # 16 Polarization: 98.30 SS G_CDS: -1.65 Total: 96.65 kcal Total: -77.93 -5.08 -83.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265116717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.559 kcal (2) G-P(sol) polarization free energy of solvation -77.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds