Wall clock time and date at job start Thu Mar 26 2020 16:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 C 1.52998 * 109.47194 * 240.00138 * 2 1 3 5 5 N 1.46500 * 109.47433 * 119.99965 * 2 1 3 6 6 C 1.34953 * 126.03494 * 75.25862 * 5 2 1 7 7 C 1.35317 * 107.74377 * 180.14823 * 6 5 2 8 8 C 1.50692 * 126.03853 * 179.87402 * 7 6 5 9 9 O 1.42901 * 109.47507 * 29.71767 * 8 7 6 10 10 Si 1.86297 * 109.47100 * 149.71724 * 8 7 6 11 11 H 1.48508 * 109.47292 * 180.02562 * 10 8 7 12 12 H 1.48503 * 109.47395 * 299.99922 * 10 8 7 13 13 H 1.48493 * 109.47469 * 59.99945 * 10 8 7 14 14 C 1.50707 * 109.47322 * 269.71756 * 8 7 6 15 15 O 1.21293 * 119.99932 * 124.99942 * 14 8 7 16 16 N 1.34778 * 119.99606 * 304.99881 * 14 8 7 17 17 C 1.40077 * 119.99719 * 175.36678 * 16 14 8 18 18 C 1.38872 * 119.99797 * 215.09749 * 17 16 14 19 19 C 1.38047 * 120.00099 * 180.02562 * 18 17 16 20 20 C 1.38887 * 120.00000 * 359.97438 * 19 18 17 21 21 N 1.39990 * 120.00199 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00088 * 35.10334 * 21 20 19 23 23 O 1.21716 * 120.00132 * 355.37981 * 22 21 20 24 24 C 1.46544 * 119.99584 * 175.10905 * 22 21 20 25 25 S 1.75825 * 125.46588 * 359.69454 * 24 22 21 26 26 C 1.70616 * 91.56538 * 179.91182 * 25 24 22 27 27 C 1.33845 * 110.95559 * 0.35613 * 26 25 24 28 28 C 1.36704 * 125.45414 * 179.97438 * 24 22 21 29 29 C 1.38894 * 119.99276 * 0.25193 * 20 19 18 30 30 C 1.38040 * 119.99803 * 359.49232 * 29 20 19 31 31 C 1.39873 * 107.91840 * 359.61230 * 7 6 5 32 32 N 1.30838 * 108.20175 * 0.24097 * 31 7 6 33 33 H 1.09002 * 109.47487 * 299.99987 * 1 2 3 34 34 H 1.09001 * 109.47415 * 59.99924 * 1 2 3 35 35 H 1.09003 * 109.47360 * 179.97438 * 1 2 3 36 36 H 1.08996 * 109.47343 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46990 * 300.00337 * 3 2 1 38 38 H 1.09002 * 109.46881 * 59.99641 * 3 2 1 39 39 H 1.09003 * 109.47436 * 300.00016 * 4 2 1 40 40 H 1.09002 * 109.47437 * 59.99961 * 4 2 1 41 41 H 1.08996 * 109.47601 * 179.97438 * 4 2 1 42 42 H 1.07998 * 126.12641 * 0.02562 * 6 5 2 43 43 H 0.96995 * 120.00232 * 355.36750 * 16 14 8 44 44 H 1.08000 * 120.00031 * 359.97438 * 18 17 16 45 45 H 1.07996 * 119.99811 * 179.97438 * 19 18 17 46 46 H 0.97007 * 120.00061 * 215.10080 * 21 20 19 47 47 H 1.08002 * 124.51961 * 180.02562 * 26 25 24 48 48 H 1.07996 * 122.45119 * 179.70379 * 27 26 25 49 49 H 1.07997 * 123.35733 * 359.97438 * 28 24 22 50 50 H 1.07998 * 119.99462 * 179.72393 * 29 20 19 51 51 H 1.08001 * 119.99830 * 180.22852 * 30 29 20 52 52 H 1.07994 * 125.89424 * 180.25845 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0212 -2.0251 1.3968 7 6 2.5484 -2.2569 2.6214 8 6 2.7422 -3.6069 3.2621 9 8 2.9586 -4.5893 2.2472 10 14 4.2191 -3.5498 4.3962 11 1 4.4105 -4.8805 5.0272 12 1 5.4305 -3.1948 3.6139 13 1 3.9943 -2.5290 5.4509 14 6 1.5129 -3.9673 4.0560 15 8 0.9362 -5.0123 3.8400 16 7 1.0544 -3.1284 5.0061 17 6 -0.1414 -3.4160 5.6765 18 6 -0.9891 -2.3843 6.0578 19 6 -2.1673 -2.6677 6.7190 20 6 -2.5051 -3.9847 7.0025 21 7 -3.6996 -4.2721 7.6735 22 6 -4.7968 -3.5226 7.4473 23 8 -4.7280 -2.5456 6.7248 24 6 -6.0738 -3.8876 8.0666 25 16 -6.3388 -5.2714 9.1185 26 6 -7.9869 -4.8719 9.3066 27 6 -8.2955 -3.7722 8.6089 28 6 -7.2512 -3.2098 7.9147 29 6 -1.6549 -5.0162 6.6253 30 6 -0.4793 -4.7330 5.9594 31 6 2.8872 -1.0222 3.1847 32 7 2.5699 -0.0827 2.3312 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3634 -1.0277 -0.0005 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9563 0.8900 39 1 1.6767 -1.7489 -1.2493 40 1 1.6767 -0.2074 -2.1393 41 1 3.1299 -0.7208 -1.2495 42 1 1.6647 -2.7738 0.7050 43 1 1.5524 -2.3255 5.2255 44 1 -0.7263 -1.3602 5.8377 45 1 -2.8264 -1.8653 7.0159 46 1 -3.7378 -5.0107 8.3013 47 1 -8.6887 -5.4347 9.9043 48 1 -9.2924 -3.3571 8.5926 49 1 -7.3507 -2.3208 7.3097 50 1 -1.9154 -6.0400 6.8496 51 1 0.1800 -5.5353 5.6628 52 1 3.3339 -0.8708 4.1562 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000501771264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 16:05:18 Heat of formation + Delta-G solvation = -3.418180 kcal Electronic energy + Delta-G solvation = -38203.413746 eV Core-core repulsion = 33261.069573 eV Total energy + Delta-G solvation = -4942.344173 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 427.140 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.19946 -41.73872 -40.84959 -39.23424 -38.33498 -37.68817 -36.34776 -34.78995 -33.82517 -31.96994 -31.47201 -31.24881 -30.09541 -29.37421 -28.38480 -28.21043 -26.51977 -25.65408 -24.31902 -23.56562 -23.25419 -22.27107 -21.55052 -20.57366 -20.31677 -20.10070 -19.61514 -18.64252 -18.34099 -17.93747 -17.30099 -16.88317 -16.57244 -16.41814 -16.21500 -16.03990 -15.70875 -15.49917 -15.29041 -15.09376 -14.95906 -14.89148 -14.65838 -14.42014 -14.25952 -14.03347 -13.88679 -13.77732 -13.73471 -13.70405 -13.41017 -13.21894 -13.18532 -13.15727 -13.04776 -12.76486 -12.37817 -12.32184 -12.19346 -12.16817 -12.00313 -11.94118 -11.85496 -11.84130 -11.34594 -11.28272 -10.83892 -10.48293 -10.14530 -9.94672 -9.93874 -9.55551 -9.12504 -8.71651 -8.28828 -7.67953 -0.59402 0.21865 0.39569 0.44744 0.89316 1.05429 1.29156 1.35990 1.40047 1.50926 1.67824 1.82984 1.83835 2.02812 2.16881 2.39679 2.70504 2.88039 3.51149 3.60678 3.79465 3.91014 3.91473 4.00358 4.11372 4.12900 4.13131 4.31241 4.34917 4.40646 4.49441 4.52384 4.53861 4.56310 4.68901 4.70578 4.75745 4.77268 4.83403 4.86814 4.88458 4.98294 4.99922 5.05278 5.09129 5.18082 5.21431 5.27217 5.31263 5.34216 5.38728 5.45699 5.56124 5.65622 5.90049 6.08687 6.24390 6.30538 6.64703 6.88302 6.91020 7.43839 7.94219 Molecular weight = 427.14amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.001661 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.618110 B =16852.178546 C =18866.411272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.130 4.130 4 C -0.155 4.155 5 N -0.364 5.364 6 C 0.065 3.935 7 C -0.239 4.239 8 C 0.020 3.980 9 O -0.898 6.898 10 Si 0.960 3.040 11 H -0.304 1.304 12 H -0.278 1.278 13 H -0.214 1.214 14 C 0.490 3.510 15 O -0.569 6.569 16 N -0.672 5.672 17 C 0.129 3.871 18 C -0.132 4.132 19 C -0.100 4.100 20 C 0.112 3.888 21 N -0.653 5.653 22 C 0.587 3.413 23 O -0.552 6.552 24 C -0.307 4.307 25 S 0.241 5.759 26 C -0.213 4.213 27 C -0.161 4.161 28 C -0.054 4.054 29 C -0.112 4.112 30 C -0.130 4.130 31 C 0.020 3.980 32 N -0.299 5.299 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.114 0.886 41 H 0.053 0.947 42 H 0.144 0.856 43 H 0.415 0.585 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.421 0.579 47 H 0.202 0.798 48 H 0.170 0.830 49 H 0.147 0.853 50 H 0.153 0.847 51 H 0.116 0.884 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.253 7.363 12.977 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.084 3.916 3 C -0.188 4.188 4 C -0.213 4.213 5 N -0.150 5.150 6 C -0.080 4.080 7 C -0.251 4.251 8 C -0.081 4.081 9 O -0.844 6.844 10 Si 0.784 3.216 11 H -0.231 1.231 12 H -0.203 1.203 13 H -0.139 1.139 14 C 0.282 3.718 15 O -0.447 6.447 16 N -0.321 5.321 17 C 0.034 3.966 18 C -0.153 4.153 19 C -0.121 4.121 20 C 0.018 3.982 21 N -0.299 5.299 22 C 0.377 3.623 23 O -0.432 6.432 24 C -0.427 4.427 25 S 0.508 5.492 26 C -0.351 4.351 27 C -0.191 4.191 28 C -0.088 4.088 29 C -0.133 4.133 30 C -0.151 4.151 31 C -0.165 4.165 32 N -0.120 5.120 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.253 0.747 44 H 0.162 0.838 45 H 0.159 0.841 46 H 0.259 0.741 47 H 0.219 0.781 48 H 0.187 0.813 49 H 0.165 0.835 50 H 0.171 0.829 51 H 0.134 0.866 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.997 7.277 12.770 23.237 hybrid contribution -0.712 -0.567 -0.727 1.165 sum -18.710 6.711 12.043 23.241 Atomic orbital electron populations 1.22221 0.92330 1.02295 1.04132 1.21119 0.95074 0.94466 0.80943 1.21839 1.01292 0.91699 1.03928 1.22233 1.01564 1.00711 0.96828 1.49089 1.48042 1.03376 1.14469 1.21839 1.01729 0.85830 0.98609 1.21221 1.09870 0.96504 0.97474 1.22577 0.94939 0.90878 0.99720 1.94967 1.89054 1.52057 1.48325 0.86070 0.80841 0.78176 0.76514 1.23129 1.20328 1.13853 1.24222 0.87011 0.82702 0.77896 1.90390 1.59505 1.26840 1.67964 1.44080 1.22854 1.27362 1.37790 1.18298 0.88529 0.94400 0.95410 1.20950 0.93497 0.98920 1.01929 1.21066 0.95654 0.95893 0.99478 1.17602 0.87395 0.93403 0.99802 1.43118 1.07974 1.34702 1.44092 1.17428 0.82847 0.82239 0.79816 1.90819 1.85431 1.28008 1.38935 1.24404 0.97424 1.07203 1.13702 1.82888 1.03883 1.22186 1.40202 1.25844 1.01359 1.02261 1.05623 1.20254 1.01501 0.97509 0.99866 1.21049 0.90465 0.99720 0.97595 1.20885 0.94012 0.99267 0.99099 1.21107 0.98796 0.96039 0.99135 1.24057 1.01938 0.89758 1.00719 1.76978 1.18303 1.22004 0.94761 0.92637 0.87104 0.93779 0.92863 0.87786 0.91962 0.93290 0.86707 0.92788 0.83888 0.74743 0.83827 0.84108 0.74078 0.78073 0.81268 0.83486 0.82909 0.86575 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.73 71.98 0.63 -3.23 16 2 C 0.17 4.75 1.24 3.60 0.00 4.76 16 3 C -0.13 -3.01 8.09 71.98 0.58 -2.42 16 4 C -0.16 -4.04 8.29 71.98 0.60 -3.45 16 5 N -0.36 -14.26 3.43 -307.84 -1.06 -15.31 16 6 C 0.07 3.17 10.08 83.54 0.84 4.01 16 7 C -0.24 -11.95 4.35 -20.15 -0.09 -12.04 16 8 C 0.02 1.17 0.77 29.10 0.02 1.20 16 9 O -0.90 -66.29 16.83 -129.99 -2.19 -68.48 16 10 Si 0.96 46.30 24.71 68.60 1.70 48.00 16 11 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 12 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 13 H -0.21 -7.50 6.82 99.48 0.68 -6.83 16 14 C 0.49 27.09 5.79 87.66 0.51 27.60 16 15 O -0.57 -36.15 13.94 15.92 0.22 -35.92 16 16 N -0.67 -29.17 4.90 -303.37 -1.49 -30.66 16 17 C 0.13 5.15 6.30 38.13 0.24 5.39 16 18 C -0.13 -4.45 9.96 22.38 0.22 -4.22 16 19 C -0.10 -3.20 8.69 22.38 0.19 -3.00 16 20 C 0.11 3.32 6.30 38.15 0.24 3.56 16 21 N -0.65 -15.08 5.33 -307.06 -1.64 -16.71 16 22 C 0.59 15.10 7.62 86.41 0.66 15.76 16 23 O -0.55 -18.40 14.27 -4.40 -0.06 -18.46 16 24 C -0.31 -5.82 6.45 24.08 0.16 -5.66 16 25 S 0.24 2.59 22.16 -56.49 -1.25 1.33 16 26 C -0.21 -1.73 10.92 66.82 0.73 -1.00 16 27 C -0.16 -1.73 10.15 21.08 0.21 -1.51 16 28 C -0.05 -0.90 10.01 21.72 0.22 -0.69 16 29 C -0.11 -3.49 9.96 22.38 0.22 -3.27 16 30 C -0.13 -5.17 8.69 22.37 0.19 -4.98 16 31 C 0.02 0.83 10.06 85.24 0.86 1.69 16 32 N -0.30 -11.71 11.66 -57.02 -0.66 -12.38 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 1.54 8.04 -2.39 -0.02 1.52 16 39 H 0.05 1.46 7.36 -2.39 -0.02 1.44 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.14 7.48 7.54 -2.91 -0.02 7.46 16 43 H 0.42 15.26 7.50 -92.71 -0.70 14.56 16 44 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 45 H 0.14 4.42 6.21 -2.91 -0.02 4.40 16 46 H 0.42 6.71 7.95 -92.70 -0.74 5.97 16 47 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 48 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 49 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 50 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 51 H 0.12 5.35 6.22 -2.91 -0.02 5.33 16 52 H 0.20 6.62 6.79 -2.91 -0.02 6.60 16 Total: -1.00 -96.13 445.63 1.11 -95.02 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.29 Total: 35.09 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 7.24 Total: 18.48 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -4.85 Total: -75.06 kcal Atomic # 8 Polarization: -120.83 SS G_CDS: -2.03 Total: -122.86 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.70 Total: 48.00 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.25 Total: 1.33 kcal Total: -96.13 1.11 -95.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000501771264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.605 kcal (2) G-P(sol) polarization free energy of solvation -96.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds