Wall clock time and date at job start Thu Mar 26 2020 13:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.97593 * 2 1 4 4 C 1.38178 * 120.02581 * 179.97438 * 3 2 1 5 5 C 1.38482 * 119.97439 * 0.02562 * 4 3 2 6 6 F 1.35102 * 120.02732 * 180.02562 * 5 4 3 7 7 C 1.38447 * 119.94709 * 359.70262 * 5 4 3 8 8 C 1.38213 * 119.97394 * 0.55081 * 7 5 4 9 9 C 1.50696 * 119.98804 * 179.74596 * 8 7 5 10 10 O 1.42907 * 109.47478 * 239.48122 * 9 8 7 11 11 Si 1.86305 * 109.47051 * 359.47735 * 9 8 7 12 12 H 1.48495 * 109.47065 * 184.95373 * 11 9 8 13 13 H 1.48497 * 109.47216 * 304.95368 * 11 9 8 14 14 H 1.48501 * 109.46773 * 64.95311 * 11 9 8 15 15 C 1.50701 * 109.47269 * 119.47816 * 9 8 7 16 16 O 1.21295 * 119.99792 * 125.00279 * 15 9 8 17 17 N 1.34771 * 119.99894 * 305.00026 * 15 9 8 18 18 C 1.40087 * 119.99870 * 175.44209 * 17 15 9 19 19 C 1.38874 * 119.99710 * 215.10999 * 18 17 15 20 20 C 1.38044 * 119.99719 * 180.02562 * 19 18 17 21 21 C 1.38891 * 120.00182 * 359.97438 * 20 19 18 22 22 N 1.39991 * 119.99994 * 179.97438 * 21 20 19 23 23 C 1.34775 * 120.00616 * 35.12333 * 22 21 20 24 24 O 1.21729 * 119.99338 * 355.45400 * 23 22 21 25 25 C 1.46533 * 120.00753 * 175.45064 * 23 22 21 26 26 S 1.75838 * 125.45681 * 359.69947 * 25 23 22 27 27 C 1.70611 * 91.56344 * 179.91098 * 26 25 23 28 28 C 1.33850 * 110.95770 * 0.35249 * 27 26 25 29 29 C 1.36693 * 125.46873 * 179.97438 * 25 23 22 30 30 C 1.38886 * 119.99461 * 0.25537 * 21 20 19 31 31 C 1.38045 * 119.99627 * 359.51272 * 30 21 20 32 32 H 1.09006 * 109.46960 * 274.84679 * 1 2 3 33 33 H 1.09000 * 109.47050 * 34.84371 * 1 2 3 34 34 H 1.09000 * 109.47363 * 154.84691 * 1 2 3 35 35 H 1.07998 * 119.98573 * 359.97438 * 3 2 1 36 36 H 1.07997 * 120.01144 * 180.02562 * 4 3 2 37 37 H 1.07995 * 120.00956 * 180.29784 * 7 5 4 38 38 H 0.97001 * 120.00099 * 355.44961 * 17 15 9 39 39 H 1.07991 * 120.00152 * 0.02562 * 19 18 17 40 40 H 1.08005 * 119.99710 * 179.97438 * 20 19 18 41 41 H 0.97000 * 119.99942 * 215.39257 * 22 21 20 42 42 H 1.07999 * 124.52427 * 180.02562 * 27 26 25 43 43 H 1.08003 * 122.45089 * 179.70171 * 28 27 26 44 44 H 1.08005 * 123.34824 * 359.97438 * 29 25 23 45 45 H 1.08000 * 120.00359 * 179.72741 * 30 21 20 46 46 H 1.07998 * 119.99856 * 180.23206 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6236 -0.0001 0.0016 7 6 3.5797 -1.1987 0.0062 8 6 2.1976 -1.1974 0.0004 9 6 1.4432 -2.5019 0.0008 10 8 0.6173 -2.5751 -1.1632 11 14 2.6528 -3.9189 -0.0062 12 1 1.9130 -5.2007 -0.1267 13 1 3.5801 -3.7724 -1.1569 14 1 3.4297 -3.9127 1.2594 15 6 0.5812 -2.5834 1.2343 16 8 -0.6104 -2.7841 1.1292 17 7 1.1344 -2.4333 2.4540 18 6 0.3210 -2.4135 3.5944 19 6 0.6518 -1.5986 4.6691 20 6 -0.1495 -1.5795 5.7930 21 6 -1.2867 -2.3749 5.8488 22 7 -2.0989 -2.3559 6.9888 23 6 -2.2692 -1.2091 7.6760 24 8 -1.6525 -0.2099 7.3549 25 6 -3.1968 -1.1649 8.8096 26 16 -4.1626 -2.5145 9.3905 27 6 -4.8444 -1.5555 10.6259 28 6 -4.3683 -0.3054 10.5795 29 6 -3.4540 -0.0665 9.5816 30 6 -1.6148 -3.1934 4.7758 31 6 -0.8161 -3.2089 3.6500 32 1 -0.3633 0.0868 1.0240 33 1 -0.3633 0.8434 -0.5871 34 1 -0.3634 -0.9302 -0.4368 35 1 1.6572 2.1327 -0.0004 36 1 4.1190 2.1346 0.0010 37 1 4.1191 -2.1343 0.0111 38 1 2.0958 -2.3389 2.5423 39 1 1.5358 -0.9798 4.6256 40 1 0.1080 -0.9460 6.6290 41 1 -2.5361 -3.1691 7.2865 42 1 -5.5679 -1.9084 11.3459 43 1 -4.6798 0.4597 11.2752 44 1 -2.9851 0.8935 9.4233 45 1 -2.4966 -3.8153 4.8208 46 1 -1.0732 -3.8425 2.8141 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514237889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 13:18:54 Heat of formation + Delta-G solvation = -72.228723 kcal Electronic energy + Delta-G solvation = -35786.027176 eV Core-core repulsion = 30840.483717 eV Total energy + Delta-G solvation = -4945.543459 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 413.093 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.35927 -40.63288 -39.69316 -38.66128 -38.01050 -37.25153 -35.05301 -33.31918 -32.65544 -31.43661 -30.68361 -30.45311 -29.26243 -28.25289 -25.95957 -25.45921 -24.36290 -23.07568 -22.41547 -21.78503 -21.19300 -20.56367 -19.78321 -19.18288 -18.72054 -17.47813 -17.17613 -16.75279 -16.23062 -16.03160 -15.82327 -15.53784 -15.15331 -15.06285 -14.99632 -14.41573 -14.29707 -14.00310 -13.85053 -13.65125 -13.37906 -13.24532 -13.16794 -13.07986 -12.99269 -12.79363 -12.75961 -12.64699 -12.45258 -12.31113 -11.92341 -11.45480 -11.12998 -11.05108 -10.95081 -10.72675 -10.63588 -10.54668 -10.21216 -10.16299 -10.05270 -9.91184 -9.35618 -9.15581 -9.04723 -8.90184 -8.61732 -8.23870 -7.65049 -7.34802 -6.22229 -5.67185 0.06208 1.01448 1.41346 1.48977 1.71617 1.83348 1.93341 2.03787 2.80259 2.92541 3.10407 3.19830 3.23832 3.66100 3.91505 4.09296 4.29877 4.37402 4.43593 4.56652 4.85382 4.86255 5.04587 5.11852 5.30105 5.34471 5.41313 5.50419 5.61352 5.63656 5.70684 5.78002 5.80484 5.88584 5.92900 6.03491 6.08230 6.27015 6.40031 6.45481 6.50918 6.60541 6.64061 6.66815 6.73083 6.79052 6.82898 6.98677 7.01600 7.21727 7.33693 7.50825 7.55420 7.82816 7.88229 8.21511 9.13856 9.67477 Molecular weight = 413.09amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.001760 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.446272 B =15900.905499 C =16815.674533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.102 4.102 4 C -0.172 4.172 5 C 0.084 3.916 6 F -0.152 7.152 7 C -0.177 4.177 8 C -0.030 4.030 9 C 0.027 3.973 10 O -0.788 6.788 11 Si 0.923 3.077 12 H -0.274 1.274 13 H -0.265 1.265 14 H -0.290 1.290 15 C 0.490 3.510 16 O -0.510 6.510 17 N -0.689 5.689 18 C 0.160 3.840 19 C -0.141 4.141 20 C -0.096 4.096 21 C 0.101 3.899 22 N -0.663 5.663 23 C 0.588 3.412 24 O -0.509 6.509 25 C -0.266 4.266 26 S 0.201 5.799 27 C -0.228 4.228 28 C -0.150 4.150 29 C -0.053 4.053 30 C -0.119 4.119 31 C -0.111 4.111 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.404 0.596 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.404 0.596 42 H 0.170 0.830 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.124 0.876 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 1.311 21.958 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C -0.120 4.120 4 C -0.191 4.191 5 C 0.065 3.935 6 F -0.130 7.130 7 C -0.195 4.195 8 C -0.032 4.032 9 C -0.077 4.077 10 O -0.732 6.732 11 Si 0.750 3.250 12 H -0.199 1.199 13 H -0.190 1.190 14 H -0.219 1.219 15 C 0.281 3.719 16 O -0.383 6.383 17 N -0.338 5.338 18 C 0.063 3.937 19 C -0.163 4.163 20 C -0.116 4.116 21 C 0.008 3.992 22 N -0.308 5.308 23 C 0.375 3.625 24 O -0.386 6.386 25 C -0.386 4.386 26 S 0.468 5.532 27 C -0.366 4.366 28 C -0.181 4.181 29 C -0.086 4.086 30 C -0.140 4.140 31 C -0.132 4.132 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.239 0.761 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.239 0.761 42 H 0.187 0.813 43 H 0.165 0.835 44 H 0.173 0.827 45 H 0.142 0.858 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.032 -0.312 20.809 21.667 hybrid contribution 0.492 1.589 0.860 1.873 sum -5.540 1.277 21.669 22.402 Atomic orbital electron populations 1.21226 0.90772 1.06483 1.00812 1.19839 0.97084 0.91515 0.97646 1.20897 0.92914 0.97916 1.00266 1.20826 0.94867 0.96195 1.07195 1.17563 0.76120 0.94670 1.05141 1.91422 1.29703 1.97520 1.94391 1.21010 0.94994 0.96515 1.07025 1.21119 0.91665 0.98666 0.91737 1.22638 0.97959 0.93950 0.93141 1.95093 1.59796 1.89746 1.28532 0.86612 0.77603 0.82794 0.77946 1.19926 1.19010 1.21900 1.24118 0.90803 0.73099 0.83861 1.90460 1.16191 1.45762 1.85868 1.44554 1.10187 1.73932 1.05144 1.18092 0.93489 0.94498 0.87587 1.20846 1.01806 0.99647 0.93959 1.20929 0.92353 0.99426 0.98919 1.17543 0.92316 1.02213 0.87156 1.43197 1.49082 1.11361 1.27123 1.16983 0.81163 0.83188 0.81182 1.90858 1.46660 1.34199 1.66850 1.24592 1.08927 0.99656 1.05442 1.83035 1.34703 1.12261 1.23243 1.25359 1.07195 0.98911 1.05128 1.20081 0.99755 0.97223 1.01024 1.20853 0.96068 0.99009 0.92681 1.20737 1.00251 1.01145 0.91855 1.21190 0.94970 0.99210 0.97792 0.93099 0.93440 0.85359 0.86008 0.85839 0.85879 0.76078 0.85528 0.84548 0.76059 0.81252 0.83527 0.82666 0.85825 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.47 36.01 0.30 -2.83 16 2 C -0.06 -1.34 5.74 -104.61 -0.60 -1.94 16 3 C -0.10 -1.89 9.72 -39.59 -0.38 -2.27 16 4 C -0.17 -3.01 10.03 -39.51 -0.40 -3.41 16 5 C 0.08 1.61 7.30 -39.41 -0.29 1.32 16 6 F -0.15 -2.75 17.27 2.25 0.04 -2.71 16 7 C -0.18 -3.74 8.65 -39.51 -0.34 -4.08 16 8 C -0.03 -0.72 4.52 -104.64 -0.47 -1.19 16 9 C 0.03 0.70 0.40 -29.04 -0.01 0.69 16 10 O -0.79 -25.49 15.06 -55.09 -0.83 -26.31 16 11 Si 0.92 21.59 23.23 -169.99 -3.95 17.64 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.17 7.04 56.52 0.40 -5.77 16 14 H -0.29 -5.74 7.11 56.52 0.40 -5.33 16 15 C 0.49 12.03 4.11 -10.99 -0.05 11.98 16 16 O -0.51 -13.86 13.16 -14.31 -0.19 -14.05 16 17 N -0.69 -13.89 4.90 -9.82 -0.05 -13.94 16 18 C 0.16 2.95 6.30 -83.61 -0.53 2.42 16 19 C -0.14 -2.28 9.96 -39.42 -0.39 -2.67 16 20 C -0.10 -1.48 8.69 -39.41 -0.34 -1.83 16 21 C 0.10 1.46 6.30 -83.65 -0.53 0.93 16 22 N -0.66 -7.72 5.33 -11.05 -0.06 -7.78 16 23 C 0.59 7.48 7.62 -12.92 -0.10 7.38 16 24 O -0.51 -8.19 14.27 5.16 0.07 -8.12 16 25 C -0.27 -2.60 6.45 -36.80 -0.24 -2.84 16 26 S 0.20 1.30 22.16 -107.50 -2.38 -1.08 16 27 C -0.23 -1.31 10.92 29.19 0.32 -0.99 16 28 C -0.15 -0.98 10.15 -41.42 -0.42 -1.40 16 29 C -0.05 -0.46 10.01 -40.43 -0.40 -0.87 16 30 C -0.12 -1.77 9.96 -39.41 -0.39 -2.16 16 31 C -0.11 -2.01 8.69 -39.42 -0.34 -2.35 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.13 3.55 4.37 -51.93 -0.23 3.32 16 35 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.12 2.50 4.84 -52.49 -0.25 2.24 16 38 H 0.40 7.25 8.01 -40.82 -0.33 6.92 16 39 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.14 2.10 6.22 -52.48 -0.33 1.77 16 41 H 0.40 3.43 7.95 -40.82 -0.32 3.10 16 42 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 44 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.15 2.93 6.22 -52.49 -0.33 2.60 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -34.79 400.89 -11.29 -46.08 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.39 Total: 10.32 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -5.60 Total: -6.09 kcal Atomic # 7 Polarization: -21.61 SS G_CDS: -0.11 Total: -21.72 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.94 Total: -48.48 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -3.95 Total: 17.64 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.38 Total: -1.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.79 -11.29 -46.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514237889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.149 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds