Wall clock time and date at job start Thu Mar 26 2020 13:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.97593 * 2 1 4 4 C 1.38178 * 120.02581 * 179.97438 * 3 2 1 5 5 C 1.38482 * 119.97439 * 0.02562 * 4 3 2 6 6 F 1.35102 * 120.02732 * 180.02562 * 5 4 3 7 7 C 1.38447 * 119.94709 * 359.70262 * 5 4 3 8 8 C 1.38213 * 119.97394 * 0.55081 * 7 5 4 9 9 C 1.50696 * 119.98804 * 179.74596 * 8 7 5 10 10 O 1.42907 * 109.47478 * 239.48122 * 9 8 7 11 11 Si 1.86305 * 109.47051 * 359.47735 * 9 8 7 12 12 H 1.48495 * 109.47065 * 184.95373 * 11 9 8 13 13 H 1.48497 * 109.47216 * 304.95368 * 11 9 8 14 14 H 1.48501 * 109.46773 * 64.95311 * 11 9 8 15 15 C 1.50701 * 109.47269 * 119.47816 * 9 8 7 16 16 O 1.21295 * 119.99792 * 125.00279 * 15 9 8 17 17 N 1.34771 * 119.99894 * 305.00026 * 15 9 8 18 18 C 1.40087 * 119.99870 * 175.44209 * 17 15 9 19 19 C 1.38874 * 119.99710 * 215.10999 * 18 17 15 20 20 C 1.38044 * 119.99719 * 180.02562 * 19 18 17 21 21 C 1.38891 * 120.00182 * 359.97438 * 20 19 18 22 22 N 1.39991 * 119.99994 * 179.97438 * 21 20 19 23 23 C 1.34775 * 120.00616 * 35.12333 * 22 21 20 24 24 O 1.21729 * 119.99338 * 355.45400 * 23 22 21 25 25 C 1.46533 * 120.00753 * 175.45064 * 23 22 21 26 26 S 1.75838 * 125.45681 * 359.69947 * 25 23 22 27 27 C 1.70611 * 91.56344 * 179.91098 * 26 25 23 28 28 C 1.33850 * 110.95770 * 0.35249 * 27 26 25 29 29 C 1.36693 * 125.46873 * 179.97438 * 25 23 22 30 30 C 1.38886 * 119.99461 * 0.25537 * 21 20 19 31 31 C 1.38045 * 119.99627 * 359.51272 * 30 21 20 32 32 H 1.09006 * 109.46960 * 274.84679 * 1 2 3 33 33 H 1.09000 * 109.47050 * 34.84371 * 1 2 3 34 34 H 1.09000 * 109.47363 * 154.84691 * 1 2 3 35 35 H 1.07998 * 119.98573 * 359.97438 * 3 2 1 36 36 H 1.07997 * 120.01144 * 180.02562 * 4 3 2 37 37 H 1.07995 * 120.00956 * 180.29784 * 7 5 4 38 38 H 0.97001 * 120.00099 * 355.44961 * 17 15 9 39 39 H 1.07991 * 120.00152 * 0.02562 * 19 18 17 40 40 H 1.08005 * 119.99710 * 179.97438 * 20 19 18 41 41 H 0.97000 * 119.99942 * 215.39257 * 22 21 20 42 42 H 1.07999 * 124.52427 * 180.02562 * 27 26 25 43 43 H 1.08003 * 122.45089 * 179.70171 * 28 27 26 44 44 H 1.08005 * 123.34824 * 359.97438 * 29 25 23 45 45 H 1.08000 * 120.00359 * 179.72741 * 30 21 20 46 46 H 1.07998 * 119.99856 * 180.23206 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6236 -0.0001 0.0016 7 6 3.5797 -1.1987 0.0062 8 6 2.1976 -1.1974 0.0004 9 6 1.4432 -2.5019 0.0008 10 8 0.6173 -2.5751 -1.1632 11 14 2.6528 -3.9189 -0.0062 12 1 1.9130 -5.2007 -0.1267 13 1 3.5801 -3.7724 -1.1569 14 1 3.4297 -3.9127 1.2594 15 6 0.5812 -2.5834 1.2343 16 8 -0.6104 -2.7841 1.1292 17 7 1.1344 -2.4333 2.4540 18 6 0.3210 -2.4135 3.5944 19 6 0.6518 -1.5986 4.6691 20 6 -0.1495 -1.5795 5.7930 21 6 -1.2867 -2.3749 5.8488 22 7 -2.0989 -2.3559 6.9888 23 6 -2.2692 -1.2091 7.6760 24 8 -1.6525 -0.2099 7.3549 25 6 -3.1968 -1.1649 8.8096 26 16 -4.1626 -2.5145 9.3905 27 6 -4.8444 -1.5555 10.6259 28 6 -4.3683 -0.3054 10.5795 29 6 -3.4540 -0.0665 9.5816 30 6 -1.6148 -3.1934 4.7758 31 6 -0.8161 -3.2089 3.6500 32 1 -0.3633 0.0868 1.0240 33 1 -0.3633 0.8434 -0.5871 34 1 -0.3634 -0.9302 -0.4368 35 1 1.6572 2.1327 -0.0004 36 1 4.1190 2.1346 0.0010 37 1 4.1191 -2.1343 0.0111 38 1 2.0958 -2.3389 2.5423 39 1 1.5358 -0.9798 4.6256 40 1 0.1080 -0.9460 6.6290 41 1 -2.5361 -3.1691 7.2865 42 1 -5.5679 -1.9084 11.3459 43 1 -4.6798 0.4597 11.2752 44 1 -2.9851 0.8935 9.4233 45 1 -2.4966 -3.8153 4.8208 46 1 -1.0732 -3.8425 2.8141 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514237889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 13:18:53 Heat of formation + Delta-G solvation = -95.172449 kcal Electronic energy + Delta-G solvation = -35787.022091 eV Core-core repulsion = 30840.483717 eV Total energy + Delta-G solvation = -4946.538374 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 413.093 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.82709 -41.82574 -41.20026 -40.07091 -39.12187 -38.31783 -36.36545 -34.86672 -34.33799 -33.08636 -31.97099 -31.27644 -31.11369 -29.47360 -27.63025 -26.54053 -25.73868 -24.34870 -23.66890 -23.18737 -22.59700 -21.93383 -20.80757 -20.42859 -19.63986 -18.81487 -18.45511 -18.27122 -17.67796 -17.07709 -16.85536 -16.62456 -16.56736 -16.52958 -16.40037 -15.96559 -15.59024 -15.43207 -15.13350 -15.02148 -14.71283 -14.57723 -14.53887 -14.37150 -14.26268 -14.01409 -13.92696 -13.81327 -13.70967 -13.55135 -13.20632 -12.80756 -12.63174 -12.44674 -12.36189 -12.33514 -12.03400 -12.01166 -11.93544 -11.84196 -11.71899 -11.29337 -10.83984 -10.49454 -9.94704 -9.93472 -9.82670 -9.55034 -9.27384 -8.73509 -8.40045 -7.80964 -0.58817 0.20970 0.25906 0.37807 0.39927 0.45341 0.89739 1.18460 1.29354 1.34236 1.38565 1.82694 1.86992 2.06566 2.25426 2.53161 2.71104 2.84235 3.33188 3.61393 3.81164 3.91271 3.99996 4.00575 4.13281 4.13721 4.31704 4.33359 4.35845 4.42198 4.47741 4.50455 4.54075 4.62302 4.76351 4.81009 4.83725 5.00375 5.05183 5.07667 5.13192 5.18321 5.19133 5.27779 5.34825 5.36530 5.39264 5.45466 5.58144 5.64446 5.93120 6.07180 6.11240 6.24795 6.55765 6.91629 7.32195 7.75349 Molecular weight = 413.09amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.001760 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.446272 B =15900.905499 C =16815.674533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.089 4.089 4 C -0.153 4.153 5 C 0.089 3.911 6 F -0.142 7.142 7 C -0.187 4.187 8 C -0.054 4.054 9 C -0.011 4.011 10 O -0.865 6.865 11 Si 0.941 3.059 12 H -0.302 1.302 13 H -0.265 1.265 14 H -0.228 1.228 15 C 0.495 3.505 16 O -0.553 6.553 17 N -0.677 5.677 18 C 0.130 3.870 19 C -0.131 4.131 20 C -0.101 4.101 21 C 0.114 3.886 22 N -0.654 5.654 23 C 0.587 3.413 24 O -0.551 6.551 25 C -0.307 4.307 26 S 0.240 5.760 27 C -0.213 4.213 28 C -0.161 4.161 29 C -0.054 4.054 30 C -0.113 4.113 31 C -0.127 4.127 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.128 0.872 38 H 0.414 0.586 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.421 0.579 42 H 0.202 0.798 43 H 0.170 0.830 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 2.889 25.644 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.089 4.089 3 C -0.106 4.106 4 C -0.171 4.171 5 C 0.070 3.930 6 F -0.121 7.121 7 C -0.206 4.206 8 C -0.055 4.055 9 C -0.112 4.112 10 O -0.811 6.811 11 Si 0.766 3.234 12 H -0.229 1.229 13 H -0.190 1.190 14 H -0.153 1.153 15 C 0.287 3.713 16 O -0.430 6.430 17 N -0.326 5.326 18 C 0.035 3.965 19 C -0.151 4.151 20 C -0.121 4.121 21 C 0.020 3.980 22 N -0.300 5.300 23 C 0.377 3.623 24 O -0.431 6.431 25 C -0.427 4.427 26 S 0.508 5.492 27 C -0.351 4.351 28 C -0.191 4.191 29 C -0.088 4.088 30 C -0.133 4.133 31 C -0.149 4.149 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.146 0.854 38 H 0.251 0.749 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.259 0.741 42 H 0.219 0.781 43 H 0.187 0.813 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.282 1.252 24.587 25.179 hybrid contribution 0.168 1.152 -0.092 1.168 sum -5.115 2.404 24.495 25.138 Atomic orbital electron populations 1.20972 0.92213 1.04695 1.00368 1.19949 0.96478 0.92887 0.99598 1.21187 0.93564 0.97659 0.98229 1.21244 0.94380 0.97232 1.04260 1.17589 0.76508 0.94548 1.04381 1.91451 1.28936 1.97474 1.94222 1.21005 0.94073 0.97871 1.07653 1.20774 0.92588 0.97723 0.94428 1.23196 0.98689 0.97272 0.92030 1.95003 1.62539 1.91723 1.31874 0.86282 0.77058 0.79359 0.80685 1.22934 1.18951 1.15319 1.23646 0.89983 0.72815 0.84878 1.90423 1.17780 1.48089 1.86681 1.44106 1.10762 1.73185 1.04543 1.18235 0.94114 0.96455 0.87739 1.20959 1.02308 0.98834 0.93047 1.21072 0.92647 0.99606 0.98793 1.17615 0.91960 1.00743 0.87724 1.43126 1.48553 1.12192 1.26089 1.17414 0.80921 0.82511 0.81457 1.90824 1.48497 1.35506 1.68237 1.24402 1.10569 1.01975 1.05728 1.82889 1.33187 1.10410 1.22757 1.25840 1.06356 0.98338 1.04599 1.20258 0.99518 0.98346 1.01021 1.21046 0.96192 0.98595 0.92992 1.20887 1.00448 1.01298 0.90683 1.21098 0.95910 0.99628 0.98217 0.93566 0.91243 0.90281 0.82546 0.81519 0.85445 0.74942 0.83690 0.84112 0.74100 0.78129 0.81298 0.83440 0.82952 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.47 71.24 0.60 -5.43 16 2 C -0.09 -3.95 5.74 -19.86 -0.11 -4.07 16 3 C -0.09 -3.03 9.72 22.26 0.22 -2.81 16 4 C -0.15 -4.71 10.03 22.31 0.22 -4.48 16 5 C 0.09 3.14 7.30 22.38 0.16 3.30 16 6 F -0.14 -4.65 17.27 44.97 0.78 -3.87 16 7 C -0.19 -7.72 8.65 22.31 0.19 -7.52 16 8 C -0.05 -2.57 4.52 -19.87 -0.09 -2.66 16 9 C -0.01 -0.60 0.40 29.10 0.01 -0.59 16 10 O -0.87 -60.23 15.06 -129.99 -1.96 -62.19 16 11 Si 0.94 44.82 23.23 68.60 1.59 46.41 16 12 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 13 H -0.26 -12.43 7.04 99.48 0.70 -11.73 16 14 H -0.23 -8.47 7.11 99.48 0.71 -7.76 16 15 C 0.50 25.73 4.11 87.66 0.36 26.09 16 16 O -0.55 -32.58 13.16 15.91 0.21 -32.37 16 17 N -0.68 -28.12 4.90 -303.38 -1.49 -29.61 16 18 C 0.13 4.91 6.30 38.13 0.24 5.15 16 19 C -0.13 -4.17 9.96 22.38 0.22 -3.94 16 20 C -0.10 -3.06 8.69 22.38 0.19 -2.86 16 21 C 0.11 3.21 6.30 38.15 0.24 3.45 16 22 N -0.65 -14.41 5.33 -307.06 -1.64 -16.05 16 23 C 0.59 14.54 7.62 86.41 0.66 15.20 16 24 O -0.55 -17.75 14.27 -4.44 -0.06 -17.81 16 25 C -0.31 -5.59 6.45 24.07 0.16 -5.43 16 26 S 0.24 2.45 22.16 -56.49 -1.25 1.20 16 27 C -0.21 -1.65 10.92 66.82 0.73 -0.92 16 28 C -0.16 -1.66 10.15 21.08 0.21 -1.44 16 29 C -0.05 -0.87 10.01 21.72 0.22 -0.65 16 30 C -0.11 -3.33 9.96 22.38 0.22 -3.11 16 31 C -0.13 -4.82 8.69 22.38 0.19 -4.63 16 32 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.07 2.86 8.12 -2.39 -0.02 2.84 16 34 H 0.08 4.71 4.37 -2.39 -0.01 4.70 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.13 5.02 4.84 -2.91 -0.01 5.00 16 38 H 0.41 14.88 8.01 -92.71 -0.74 14.14 16 39 H 0.15 3.99 8.06 -2.92 -0.02 3.96 16 40 H 0.14 4.23 6.22 -2.91 -0.02 4.21 16 41 H 0.42 6.33 7.95 -92.71 -0.74 5.60 16 42 H 0.20 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 44 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 45 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 46 H 0.12 5.13 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -84.72 400.89 1.41 -83.31 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.37 Total: 28.36 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 4.86 Total: 2.63 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -3.12 Total: -45.66 kcal Atomic # 8 Polarization: -110.56 SS G_CDS: -1.81 Total: -112.37 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.59 Total: 46.41 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.25 Total: 1.20 kcal Total: -84.72 1.41 -83.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514237889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.867 kcal (2) G-P(sol) polarization free energy of solvation -84.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds