Wall clock time and date at job start Thu Mar 26 2020 15:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 119.99753 * 2 1 4 4 C 1.38236 * 119.99972 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99510 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99611 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47484 * 210.00090 * 6 5 4 8 8 Si 1.86301 * 109.47205 * 330.00178 * 6 5 4 9 9 H 1.48500 * 109.47123 * 180.02562 * 8 6 5 10 10 H 1.48501 * 109.46931 * 299.99427 * 8 6 5 11 11 H 1.48494 * 109.47371 * 59.99737 * 8 6 5 12 12 C 1.50701 * 109.47357 * 89.99923 * 6 5 4 13 13 O 1.21281 * 120.00374 * 124.99635 * 12 6 5 14 14 N 1.34779 * 119.99796 * 304.72526 * 12 6 5 15 15 C 1.39954 * 120.00148 * 174.84694 * 14 12 6 16 16 C 1.39020 * 119.98769 * 146.43922 * 15 14 12 17 17 C 1.38230 * 120.25464 * 179.77094 * 16 15 14 18 18 C 1.37990 * 120.23372 * 0.51086 * 17 16 15 19 19 C 1.39747 * 119.97700 * 359.74424 * 18 17 16 20 20 C 1.43200 * 120.12499 * 179.97438 * 19 18 17 21 21 C 9.17135 * 127.32582 * 111.56571 * 2 1 3 22 22 C 9.74668 * 100.80546 * 309.01537 * 4 1 2 23 23 C 1.39846 * 120.09244 * 340.43991 * 22 21 20 24 24 C 1.38031 * 120.13888 * 179.74251 * 23 22 21 25 25 C 1.38100 * 120.32419 * 0.56490 * 24 23 22 26 26 C 1.39713 * 120.17556 * 359.69139 * 25 24 23 27 27 C 1.47747 * 120.07174 * 180.02562 * 26 25 24 28 28 O 1.21474 * 119.99751 * 179.97438 * 27 26 25 29 29 O 1.34708 * 120.00224 * 359.97438 * 27 26 25 30 30 C 1.39366 * 119.85772 * 0.02735 * 26 25 24 31 31 C 1.38544 * 119.98909 * 326.71909 * 15 14 12 32 32 C 1.38229 * 120.00523 * 0.27135 * 5 4 3 33 33 C 1.38234 * 119.99968 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.46978 * 90.00229 * 1 2 3 35 35 H 1.08999 * 109.46762 * 209.99554 * 1 2 3 36 36 H 1.08998 * 109.47198 * 330.00335 * 1 2 3 37 37 H 1.07996 * 120.00068 * 359.97438 * 3 2 1 38 38 H 1.07996 * 120.00267 * 180.02562 * 4 3 2 39 39 H 0.97003 * 120.00306 * 354.84847 * 14 12 6 40 40 H 1.07998 * 119.87344 * 0.02562 * 16 15 14 41 41 H 1.07999 * 119.88952 * 180.25459 * 17 16 15 42 42 H 1.08001 * 120.01077 * 179.72994 * 18 17 16 43 43 H 1.07997 * 119.92774 * 0.03261 * 23 22 21 44 44 H 1.08001 * 119.83704 * 180.25593 * 24 23 22 45 45 H 1.07993 * 119.91182 * 179.71968 * 25 24 23 46 46 H 0.96698 * 117.00002 * 180.02562 * 29 27 26 47 47 H 1.08000 * 120.16476 * 180.02562 * 30 26 25 48 48 H 1.08001 * 120.12011 * 359.95716 * 31 15 14 49 49 H 1.07995 * 120.00263 * 179.72757 * 32 5 4 50 50 H 1.07995 * 119.99987 * 0.02562 * 33 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0001 0.0016 7 8 6.2551 -1.1673 -0.6710 8 14 6.3997 1.5204 -0.8779 9 1 7.8847 1.5201 -0.8785 10 1 5.9048 1.5191 -2.2780 11 1 5.9046 2.7335 -0.1791 12 6 6.2811 0.0014 1.4224 13 8 7.0512 -0.8587 1.7942 14 7 5.8788 0.9615 2.2785 15 6 6.2582 0.9028 3.6243 16 6 6.4908 2.0763 4.3325 17 6 6.8612 2.0248 5.6633 18 6 7.0131 0.8078 6.2957 19 6 6.7870 -0.3780 5.5917 20 6 6.9442 -1.6426 6.2447 21 6 7.0681 -2.6807 6.7825 22 6 7.2247 -3.9426 7.4369 23 6 6.1473 -4.5178 8.1180 24 6 6.2959 -5.7383 8.7454 25 6 7.5109 -6.3942 8.7156 26 6 8.5977 -5.8292 8.0436 27 6 9.8963 -6.5332 8.0126 28 8 10.8402 -6.0410 7.4276 29 8 10.0335 -7.7210 8.6332 30 6 8.4543 -4.6001 7.4026 31 6 6.4076 -0.3249 4.2488 32 6 3.5806 -1.1971 -0.0035 33 6 2.1982 -1.1971 0.0005 34 1 -0.3633 0.0000 -1.0277 35 1 -0.3633 -0.8900 0.5138 36 1 -0.3633 0.8900 0.5138 37 1 1.6582 2.1324 -0.0004 38 1 4.1205 2.1325 0.0010 39 1 5.3263 1.6932 1.9619 40 1 6.3776 3.0318 3.8422 41 1 7.0364 2.9402 6.2089 42 1 7.3069 0.7718 7.3344 43 1 5.1956 -4.0083 8.1490 44 1 5.4594 -6.1800 9.2665 45 1 7.6210 -7.3466 9.2126 46 1 10.9021 -8.1433 8.5857 47 1 9.2910 -4.1589 6.8813 48 1 6.2311 -1.2376 3.6991 49 1 4.1206 -2.1324 -0.0071 50 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600328256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 15:26:47 Heat of formation + Delta-G solvation = -58.008509 kcal Electronic energy + Delta-G solvation = -36364.908535 eV Core-core repulsion = 31446.112497 eV Total energy + Delta-G solvation = -4918.796038 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 414.135 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.71715 -39.90607 -39.05843 -38.69751 -37.67406 -36.41642 -34.66789 -33.71447 -33.28894 -31.85997 -31.59342 -30.40502 -30.16444 -29.57462 -28.96830 -26.52980 -25.08660 -24.10866 -24.02697 -22.59517 -21.94542 -21.82925 -21.52605 -20.39975 -19.13300 -18.95526 -18.12339 -17.63825 -16.40234 -16.30774 -16.01844 -15.95008 -15.81161 -15.36121 -15.19077 -14.99456 -14.74724 -14.61835 -14.30594 -14.06521 -13.71698 -13.64606 -13.48859 -13.39926 -13.37253 -13.15117 -12.85942 -12.70213 -12.65016 -12.23716 -11.98326 -11.93964 -11.89467 -11.78603 -11.69795 -11.41721 -11.27045 -11.07896 -10.99599 -10.87346 -10.57832 -10.41564 -10.37701 -9.96216 -9.77465 -9.54350 -9.47509 -8.98168 -8.78922 -8.39143 -8.18786 -7.68291 -7.60996 -6.12181 -5.59636 0.26087 0.70554 1.02724 1.62359 2.06312 2.08922 2.17336 2.58628 2.83566 2.93814 3.10396 3.22397 3.33269 3.63583 3.73157 3.84262 3.96801 4.15084 4.43173 4.45275 4.60653 4.61641 4.67678 4.83444 5.06301 5.09320 5.13558 5.29882 5.35508 5.37871 5.40005 5.45835 5.63771 5.65943 5.71823 5.75273 5.83582 5.84889 5.87350 5.93866 6.03309 6.06422 6.11575 6.13295 6.15276 6.30126 6.40552 6.43614 6.48944 6.52492 6.65604 6.73711 6.80922 6.87079 6.89451 7.18717 7.31549 7.43730 7.46621 7.53958 7.64272 7.84656 8.20673 9.17328 9.79664 Molecular weight = 414.13amu Principal moments of inertia in cm(-1) A = 0.007665 B = 0.001659 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.120593 B =16875.715126 C =17428.657361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.122 4.122 4 C -0.155 4.155 5 C -0.064 4.064 6 C 0.026 3.974 7 O -0.804 6.804 8 Si 0.930 3.070 9 H -0.276 1.276 10 H -0.266 1.266 11 H -0.294 1.294 12 C 0.487 3.513 13 O -0.509 6.509 14 N -0.690 5.690 15 C 0.170 3.830 16 C -0.147 4.147 17 C -0.100 4.100 18 C -0.124 4.124 19 C 0.017 3.983 20 C -0.070 4.070 21 C -0.150 4.150 22 C 0.022 3.978 23 C -0.060 4.060 24 C -0.131 4.131 25 C -0.057 4.057 26 C -0.128 4.128 27 C 0.528 3.472 28 O -0.508 6.508 29 O -0.513 6.513 30 C -0.032 4.032 31 C -0.096 4.096 32 C -0.078 4.078 33 C -0.128 4.128 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.405 0.595 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.415 0.585 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.129 0.871 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -1.865 19.155 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.140 4.140 4 C -0.173 4.173 5 C -0.065 4.065 6 C -0.078 4.078 7 O -0.747 6.747 8 Si 0.758 3.242 9 H -0.202 1.202 10 H -0.190 1.190 11 H -0.224 1.224 12 C 0.279 3.721 13 O -0.382 6.382 14 N -0.340 5.340 15 C 0.074 3.926 16 C -0.168 4.168 17 C -0.119 4.119 18 C -0.143 4.143 19 C 0.017 3.983 20 C -0.070 4.070 21 C -0.151 4.151 22 C 0.022 3.978 23 C -0.078 4.078 24 C -0.149 4.149 25 C -0.075 4.075 26 C -0.129 4.129 27 C 0.372 3.628 28 O -0.397 6.397 29 O -0.325 6.325 30 C -0.050 4.050 31 C -0.116 4.116 32 C -0.096 4.096 33 C -0.146 4.146 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.241 0.759 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.274 0.726 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.147 0.853 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.166 -1.808 18.545 19.093 hybrid contribution 0.255 -0.012 -0.150 0.297 sum -3.911 -1.819 18.395 18.894 Atomic orbital electron populations 1.20671 0.92203 1.01794 1.01428 1.19705 0.95161 0.93525 1.03349 1.20767 0.93949 0.96740 1.02574 1.21223 0.94331 0.98051 1.03684 1.21374 0.98990 0.92235 0.93893 1.22601 0.88881 1.07599 0.88719 1.95105 1.81189 1.30305 1.68117 0.86594 0.80349 0.74573 0.82676 1.20168 1.19027 1.22380 1.24395 0.79555 0.78896 0.89296 1.90487 1.33425 1.36497 1.77749 1.44676 1.53501 1.29925 1.05881 1.17885 0.96235 0.93219 0.85275 1.21095 1.03203 0.97202 0.95301 1.20744 0.99693 0.97334 0.94121 1.21013 1.02485 0.91107 0.99682 1.15771 1.02688 0.87499 0.92366 1.19173 0.98563 0.92822 0.96443 1.18598 1.03094 0.92922 1.00439 1.15677 0.93586 0.90097 0.98433 1.21618 0.98183 0.94649 0.93333 1.21095 0.97794 0.95159 1.00841 1.21561 0.91576 0.99357 0.95022 1.18869 0.91910 0.96463 1.05675 1.20828 0.88338 0.78765 0.74884 1.90934 1.41124 1.66480 1.41157 1.84529 1.42174 1.34623 1.71160 1.21436 0.97136 0.91998 0.94412 1.21331 0.99398 0.98569 0.92318 1.21100 0.92477 0.99549 0.96466 1.21031 0.94531 0.96761 1.02282 0.92054 0.92274 0.92301 0.87112 0.86512 0.75921 0.85522 0.85482 0.85952 0.84573 0.84393 0.84102 0.72562 0.83795 0.84066 0.85338 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.12 -1.98 5.88 -104.62 -0.62 -2.60 16 3 C -0.12 -2.09 9.70 -39.58 -0.38 -2.47 16 4 C -0.15 -3.05 7.75 -39.58 -0.31 -3.36 16 5 C -0.06 -1.52 4.40 -104.62 -0.46 -1.98 16 6 C 0.03 0.71 0.70 -29.03 -0.02 0.69 16 7 O -0.80 -27.58 16.18 -55.09 -0.89 -28.47 16 8 Si 0.93 22.33 24.19 -169.99 -4.11 18.22 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -5.70 6.38 56.52 0.36 -5.34 16 12 C 0.49 12.72 5.68 -10.98 -0.06 12.66 16 13 O -0.51 -15.14 14.20 -14.30 -0.20 -15.34 16 14 N -0.69 -14.28 4.90 -9.90 -0.05 -14.33 16 15 C 0.17 3.20 6.27 -83.75 -0.53 2.67 16 16 C -0.15 -2.17 9.95 -39.29 -0.39 -2.56 16 17 C -0.10 -1.28 10.02 -39.68 -0.40 -1.68 16 18 C -0.12 -1.72 9.76 -39.11 -0.38 -2.10 16 19 C 0.02 0.30 5.73 -106.88 -0.61 -0.32 16 20 C -0.07 -1.16 13.25 -38.82 -0.51 -1.68 16 21 C -0.15 -2.29 13.23 -38.90 -0.51 -2.80 16 22 C 0.02 0.28 5.73 -106.99 -0.61 -0.33 16 23 C -0.06 -0.58 9.75 -39.06 -0.38 -0.96 16 24 C -0.13 -0.99 10.01 -39.71 -0.40 -1.38 16 25 C -0.06 -0.46 9.61 -39.08 -0.38 -0.84 16 26 C -0.13 -1.36 5.87 -105.04 -0.62 -1.98 16 27 C 0.53 5.67 8.27 34.62 0.29 5.96 16 28 O -0.51 -7.19 17.13 -19.25 -0.33 -7.52 16 29 O -0.51 -3.62 12.67 -40.51 -0.51 -4.13 16 30 C -0.03 -0.39 9.30 -38.70 -0.36 -0.75 16 31 C -0.10 -1.90 8.36 -38.94 -0.33 -2.22 16 32 C -0.08 -1.82 9.35 -39.58 -0.37 -2.19 16 33 C -0.13 -2.43 9.70 -39.58 -0.38 -2.81 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.12 2.08 5.25 -52.49 -0.28 1.81 16 39 H 0.40 7.23 7.08 -40.82 -0.29 6.94 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.14 0.83 7.60 -52.49 -0.40 0.43 16 46 H 0.42 1.15 9.11 45.56 0.42 1.56 16 47 H 0.14 1.91 7.65 -52.49 -0.40 1.51 16 48 H 0.14 3.24 6.41 -52.49 -0.34 2.90 16 49 H 0.13 3.31 7.48 -52.49 -0.39 2.92 16 50 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 439.46 15.07 6.62 6.62 Total: -1.00 -39.28 439.46 -12.58 -51.85 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.74 Total: 7.08 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -8.36 Total: -13.98 kcal Atomic # 7 Polarization: -14.28 SS G_CDS: -0.05 Total: -14.33 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -1.94 Total: -55.47 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.11 Total: 18.22 kcal Total LS contribution 6.62 Total: 6.62 kcal Total: -39.28 -12.58 -51.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600328256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.154 kcal (2) G-P(sol) polarization free energy of solvation -39.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds