Wall clock time and date at job start Thu Mar 26 2020 15:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38234 * 119.99847 * 2 1 4 4 C 1.38236 * 119.99948 * 180.02562 * 3 2 1 5 5 C 1.38240 * 120.00210 * 359.95891 * 4 3 2 6 6 C 1.50695 * 120.00311 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47249 * 335.00080 * 6 5 4 8 8 Si 1.86291 * 109.47295 * 214.99837 * 6 5 4 9 9 H 1.48504 * 109.47204 * 299.99953 * 8 6 5 10 10 H 1.48499 * 109.47103 * 59.99799 * 8 6 5 11 11 H 1.48500 * 109.47313 * 180.02562 * 8 6 5 12 12 C 1.50701 * 109.47085 * 94.99799 * 6 5 4 13 13 O 1.21294 * 120.00214 * 240.00251 * 12 6 5 14 14 N 1.34770 * 120.00266 * 59.99828 * 12 6 5 15 15 C 1.39952 * 120.00637 * 184.63980 * 14 12 6 16 16 C 1.39016 * 119.99427 * 144.93229 * 15 14 12 17 17 C 1.38231 * 120.25735 * 180.02562 * 16 15 14 18 18 C 1.37984 * 120.23622 * 359.96974 * 17 16 15 19 19 C 1.39750 * 119.97811 * 359.97438 * 18 17 16 20 20 C 1.43198 * 120.12545 * 180.02562 * 19 18 17 21 21 C 9.00264 * 131.51877 * 296.78231 * 4 1 2 22 22 C 9.67710 * 137.91893 * 175.39785 * 5 1 2 23 23 C 1.39840 * 120.09017 * 262.05008 * 22 21 20 24 24 C 1.38030 * 120.13882 * 179.69627 * 23 22 21 25 25 C 1.38100 * 120.32267 * 0.59706 * 24 23 22 26 26 C 1.39710 * 120.17386 * 359.67999 * 25 24 23 27 27 C 1.47755 * 120.06932 * 180.02562 * 26 25 24 28 28 O 1.21468 * 119.99753 * 179.97438 * 27 26 25 29 29 O 1.34704 * 120.00180 * 359.97438 * 27 26 25 30 30 C 1.39362 * 119.85999 * 0.02562 * 26 25 24 31 31 C 1.38550 * 119.98434 * 324.90840 * 15 14 12 32 32 C 1.38238 * 119.99803 * 0.27130 * 5 4 3 33 33 C 1.38239 * 119.99953 * 359.52016 * 32 5 4 34 34 H 1.08997 * 109.47271 * 90.00050 * 1 2 3 35 35 H 1.09005 * 109.47216 * 209.99702 * 1 2 3 36 36 H 1.08992 * 109.47406 * 329.99785 * 1 2 3 37 37 H 1.07996 * 119.99982 * 359.97438 * 3 2 1 38 38 H 1.08001 * 120.00109 * 179.97438 * 4 3 2 39 39 H 0.97001 * 119.99822 * 4.64287 * 14 12 6 40 40 H 1.08001 * 119.86971 * 359.97438 * 16 15 14 41 41 H 1.08003 * 119.88485 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.01185 * 180.02562 * 18 17 16 43 43 H 1.08000 * 119.93206 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.83818 * 180.27915 * 24 23 22 45 45 H 1.07999 * 119.91233 * 179.69972 * 25 24 23 46 46 H 0.96703 * 116.99871 * 180.02562 * 29 27 26 47 47 H 1.08000 * 120.16469 * 180.02562 * 30 26 25 48 48 H 1.07998 * 120.12211 * 359.72550 * 31 15 14 49 49 H 1.08000 * 120.00317 * 179.73051 * 32 5 4 50 50 H 1.08001 * 120.00209 * 180.24987 * 33 32 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 5.7787 0.0000 -0.0002 7 8 6.2550 1.2209 -0.5699 8 14 6.3997 -1.4390 -1.0072 9 1 5.9047 -2.7078 -0.4151 10 1 5.9047 -1.3174 -2.4020 11 1 7.8847 -1.4394 -1.0067 12 6 6.2810 -0.1234 1.4152 13 8 6.9783 0.7484 1.8895 14 7 5.9554 -1.2024 2.1542 15 6 6.3397 -1.2721 3.4981 16 6 5.5071 -1.8839 4.4282 17 6 5.8811 -1.9553 5.7570 18 6 7.0841 -1.4204 6.1700 19 6 7.9293 -0.8043 5.2432 20 6 9.1787 -0.2486 5.6683 21 6 10.2032 0.2117 6.0174 22 6 11.4540 6.4646 -0.5209 23 6 12.2823 6.1824 -1.6117 24 6 12.4671 7.1243 -2.6036 25 6 11.8463 8.3551 -2.5206 26 6 11.0206 8.6533 -1.4338 27 6 10.3571 9.9707 -1.3477 28 8 9.6390 10.2284 -0.4025 29 8 10.5486 10.8860 -2.3173 30 6 10.8239 7.7055 -0.4312 31 6 7.5503 -0.7319 3.9010 32 6 3.5806 -1.1972 -0.0050 33 6 2.1982 -1.1972 -0.0001 34 1 -0.3634 0.0000 -1.0276 35 1 -0.3634 -0.8900 0.5138 36 1 -0.3634 0.8899 0.5138 37 1 1.6581 2.1324 -0.0004 38 1 4.1205 2.1325 -0.0010 39 1 5.4547 -1.9307 1.7546 40 1 4.5640 -2.3042 4.1114 41 1 5.2294 -2.4316 6.4746 42 1 7.3729 -1.4787 7.2091 43 1 12.7749 5.2237 -1.6804 44 1 13.1043 6.8995 -3.4461 45 1 11.9994 9.0890 -3.2980 46 1 10.0938 11.7335 -2.2170 47 1 10.1862 7.9307 0.4108 48 1 8.2005 -0.2605 3.1790 49 1 4.1205 -2.1325 -0.0092 50 1 1.6582 -2.1325 0.0002 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600328256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 15:26:53 Heat of formation + Delta-G solvation = 106.787149 kcal Electronic energy + Delta-G solvation = -34367.973910 eV Core-core repulsion = 29456.323947 eV Total energy + Delta-G solvation = -4911.649962 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 414.135 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.07925 -41.50084 -40.44049 -40.14318 -39.19129 -37.41357 -35.87400 -34.97432 -33.52269 -33.29354 -32.78147 -32.16004 -31.73006 -30.83566 -29.76076 -28.10232 -26.60191 -25.68342 -24.17422 -23.99693 -23.43621 -23.20195 -22.70408 -21.90709 -20.81518 -19.34566 -19.22442 -18.96057 -18.02945 -17.71099 -17.31759 -17.08235 -17.01185 -16.93893 -16.47246 -16.26782 -16.02189 -15.78358 -15.77865 -15.44843 -15.15417 -14.94737 -14.91824 -14.74906 -14.53457 -14.29645 -14.22085 -14.11187 -14.02832 -13.57743 -13.47542 -13.06016 -12.91051 -12.83641 -12.71494 -12.65813 -12.36607 -12.30194 -12.18909 -12.11742 -11.84759 -11.70431 -11.44944 -11.36804 -11.20596 -10.92424 -10.91292 -10.19653 -9.76261 -9.74285 -9.37999 -9.25233 -8.88333 -8.50338 -7.91179 -4.17637 -1.35537 -1.11717 0.21108 0.34704 0.49192 0.60226 0.88005 1.10285 1.22442 1.35039 1.37576 1.75568 1.79428 2.11927 2.16922 2.39870 2.58109 2.65578 2.92495 3.00528 3.07043 3.16452 3.25408 3.76081 3.84845 3.95848 3.99137 4.03930 4.07685 4.11456 4.15886 4.20738 4.25253 4.36267 4.42912 4.43011 4.53392 4.55726 4.57261 4.59511 4.76174 4.80953 4.81894 4.94265 4.96804 5.06885 5.20617 5.27901 5.31569 5.32555 5.34855 5.39580 5.61749 5.63069 5.76074 5.82503 6.00213 6.12521 6.27525 6.49469 6.62290 7.26823 7.69562 7.97714 Molecular weight = 414.13amu Principal moments of inertia in cm(-1) A = 0.004462 B = 0.001395 C = 0.001180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 6273.770687 B =20064.443383 C =23715.835518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.097 4.097 6 C -0.023 4.023 7 O -0.893 6.893 8 Si 0.969 3.031 9 H -0.217 1.217 10 H -0.249 1.249 11 H -0.310 1.310 12 C 0.478 3.522 13 O -0.581 6.581 14 N -0.668 5.668 15 C 0.149 3.851 16 C -0.165 4.165 17 C -0.068 4.068 18 C -0.173 4.173 19 C 0.047 3.953 20 C -0.613 4.613 21 C -0.401 4.401 22 C 0.317 3.683 23 C -0.037 4.037 24 C -0.020 4.020 25 C -0.002 4.002 26 C -0.063 4.063 27 C 0.536 3.464 28 O -0.537 6.537 29 O -0.487 6.487 30 C -0.064 4.064 31 C -0.175 4.175 32 C -0.154 4.154 33 C -0.108 4.108 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.418 0.582 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.114 0.886 43 H 0.234 0.766 44 H 0.257 0.743 45 H 0.225 0.775 46 H 0.448 0.552 47 H 0.195 0.805 48 H 0.072 0.928 49 H 0.137 0.863 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.022 33.516 -33.635 48.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.098 4.098 6 C -0.123 4.123 7 O -0.840 6.840 8 Si 0.791 3.209 9 H -0.141 1.141 10 H -0.173 1.173 11 H -0.238 1.238 12 C 0.270 3.730 13 O -0.459 6.459 14 N -0.319 5.319 15 C 0.055 3.945 16 C -0.185 4.185 17 C -0.086 4.086 18 C -0.192 4.192 19 C 0.046 3.954 20 C -0.613 4.613 21 C -0.401 4.401 22 C 0.317 3.683 23 C -0.053 4.053 24 C -0.036 4.036 25 C -0.019 4.019 26 C -0.065 4.065 27 C 0.379 3.621 28 O -0.428 6.428 29 O -0.303 6.303 30 C -0.082 4.082 31 C -0.196 4.196 32 C -0.172 4.172 33 C -0.125 4.125 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.257 0.743 40 H 0.191 0.809 41 H 0.199 0.801 42 H 0.132 0.868 43 H 0.250 0.750 44 H 0.273 0.727 45 H 0.242 0.758 46 H 0.312 0.688 47 H 0.212 0.788 48 H 0.091 0.909 49 H 0.155 0.845 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.767 33.532 -33.895 48.880 hybrid contribution -0.920 0.397 1.354 1.685 sum 9.847 33.929 -32.541 48.032 Atomic orbital electron populations 1.20753 0.87959 1.03708 1.03212 1.20302 0.98005 0.92228 1.00066 1.21226 0.92299 0.99346 1.01632 1.20929 0.94729 0.97778 1.00287 1.20985 0.96673 0.94496 0.97658 1.23588 0.92063 1.07883 0.88725 1.94891 1.83554 1.29477 1.76029 0.85959 0.77690 0.75265 0.82014 1.14117 1.17277 1.23833 1.24593 0.78397 0.79320 0.90698 1.90454 1.39265 1.42875 1.73302 1.44040 1.57072 1.22239 1.08510 1.18083 0.92137 0.98572 0.85730 1.21227 1.00162 1.05081 0.92043 1.21254 0.94463 0.97019 0.95840 1.21333 0.96461 1.02971 0.98436 1.17230 0.91858 0.93599 0.92695 1.25370 1.01150 1.16749 1.18040 1.67737 1.07320 0.82050 0.83037 1.29774 1.08291 0.65848 0.64417 1.23469 0.93007 1.06137 0.82713 1.22583 0.99055 0.87393 0.94563 1.22971 0.86054 0.98410 0.94432 1.18865 1.03408 0.90202 0.93992 1.20223 0.77602 0.84697 0.79566 1.91093 1.37359 1.79693 1.34672 1.84395 1.69856 1.29692 1.46339 1.21972 0.98730 0.86006 1.01446 1.21110 0.97313 1.05716 0.95474 1.21369 0.96005 0.96702 1.03105 1.21320 0.92563 0.99038 0.99628 0.89970 0.89732 0.91264 0.84841 0.90413 0.74267 0.80886 0.80084 0.86778 0.74990 0.72733 0.75809 0.68757 0.78789 0.90947 0.84543 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 10.01 71.23 0.71 -1.50 16 2 C -0.11 -3.55 5.88 -19.87 -0.12 -3.66 16 3 C -0.13 -5.21 9.70 22.27 0.22 -5.00 16 4 C -0.12 -6.45 9.35 22.27 0.21 -6.24 16 5 C -0.10 -5.32 4.46 -19.87 -0.09 -5.41 16 6 C -0.02 -1.50 0.72 29.10 0.02 -1.48 16 7 O -0.89 -69.85 16.04 -129.94 -2.08 -71.93 16 8 Si 0.97 51.20 24.13 68.60 1.65 52.86 16 9 H -0.22 -8.81 6.30 99.48 0.63 -8.19 16 10 H -0.25 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.31 -18.00 7.11 99.48 0.71 -17.30 16 12 C 0.48 32.80 5.84 87.66 0.51 33.31 16 13 O -0.58 -47.14 13.94 15.96 0.22 -46.92 16 14 N -0.67 -38.68 4.89 -303.62 -1.48 -40.17 16 15 C 0.15 9.09 6.29 38.11 0.24 9.33 16 16 C -0.17 -7.96 9.96 22.45 0.22 -7.74 16 17 C -0.07 -3.21 10.02 22.21 0.22 -2.98 16 18 C -0.17 -10.54 9.76 22.58 0.22 -10.32 16 19 C 0.05 3.53 5.73 -21.33 -0.12 3.41 16 20 C -0.61 -52.88 13.25 29.99 0.40 -52.49 16 21 C -0.40 -34.52 24.44 74.29 1.82 -32.71 16 22 C 0.32 -4.81 15.40 22.95 0.35 -4.45 16 23 C -0.04 0.86 10.10 22.61 0.23 1.09 16 24 C -0.02 0.57 10.01 22.19 0.22 0.79 16 25 C 0.00 0.05 9.61 22.59 0.22 0.26 16 26 C -0.06 0.93 5.87 -20.13 -0.12 0.81 16 27 C 0.54 -3.80 8.27 70.34 0.58 -3.22 16 28 O -0.54 -2.41 17.13 19.94 0.34 -2.07 16 29 O -0.49 6.23 12.67 -56.13 -0.71 5.52 16 30 C -0.06 0.79 9.65 22.84 0.22 1.01 16 31 C -0.18 -12.95 8.40 22.69 0.19 -12.76 16 32 C -0.15 -6.50 7.85 22.27 0.17 -6.33 16 33 C -0.11 -3.62 9.70 22.27 0.22 -3.40 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.53 8.09 -2.38 -0.02 1.51 16 36 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.08 4.86 7.35 -2.91 -0.02 4.84 16 39 H 0.42 19.78 6.58 -92.71 -0.61 19.17 16 40 H 0.17 6.33 8.06 -2.91 -0.02 6.31 16 41 H 0.18 6.17 8.06 -2.91 -0.02 6.15 16 42 H 0.11 6.62 8.06 -2.91 -0.02 6.60 16 43 H 0.23 -6.28 8.06 -2.91 -0.02 -6.30 16 44 H 0.26 -9.14 8.06 -2.91 -0.02 -9.16 16 45 H 0.23 -6.40 7.60 -2.91 -0.02 -6.42 16 46 H 0.45 -7.87 9.11 -74.05 -0.67 -8.54 16 47 H 0.20 -1.60 7.65 -2.91 -0.02 -1.62 16 48 H 0.07 6.02 6.23 -2.91 -0.02 6.00 16 49 H 0.14 5.06 5.14 -2.91 -0.01 5.04 16 50 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -219.59 459.95 5.12 -214.47 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: 0.43 Total: -2.08 kcal Atomic # 6 Polarization: -116.42 SS G_CDS: 6.75 Total: -109.67 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -1.48 Total: -40.17 kcal Atomic # 8 Polarization: -113.18 SS G_CDS: -2.23 Total: -115.41 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.65 Total: 52.86 kcal Total: -219.59 5.12 -214.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600328256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 321.253 kcal (2) G-P(sol) polarization free energy of solvation -219.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -214.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds