Wall clock time and date at job start Thu Mar 26 2020 15:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99817 * 2 1 4 4 C 1.38216 * 119.99886 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99815 * 359.96656 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99905 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.47134 * 30.00224 * 7 6 5 9 9 Si 1.86297 * 109.47301 * 150.00463 * 7 6 5 10 10 H 1.48507 * 109.47065 * 59.99902 * 9 7 6 11 11 H 1.48496 * 109.47165 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47088 * 300.00171 * 9 7 6 13 13 C 1.50710 * 109.46940 * 270.00555 * 7 6 5 14 14 O 1.21288 * 119.99981 * 125.00338 * 13 7 6 15 15 N 1.34775 * 119.99812 * 304.99569 * 13 7 6 16 16 C 1.39950 * 119.99876 * 175.36941 * 15 13 7 17 17 C 1.39020 * 119.98769 * 214.83051 * 16 15 13 18 18 C 1.38236 * 120.25128 * 179.76717 * 17 16 15 19 19 C 1.37991 * 120.23369 * 0.51142 * 18 17 16 20 20 C 1.39741 * 119.98188 * 359.74483 * 19 18 17 21 21 C 1.43200 * 120.12856 * 179.97438 * 20 19 18 22 22 C 8.97166 * 107.94692 * 316.34356 * 5 1 2 23 23 C 9.69242 * 129.26030 * 237.34097 * 6 1 2 24 24 C 1.39844 * 120.08992 * 184.83234 * 23 22 21 25 25 C 1.38027 * 120.14363 * 179.74502 * 24 23 22 26 26 C 1.38105 * 120.31988 * 0.55690 * 25 24 23 27 27 C 1.39717 * 120.17620 * 359.69980 * 26 25 24 28 28 C 1.47755 * 120.07326 * 180.02562 * 27 26 25 29 29 O 1.21467 * 119.99965 * 179.97438 * 28 27 26 30 30 O 1.34701 * 119.99741 * 359.97438 * 28 27 26 31 31 C 1.39367 * 119.85648 * 0.02562 * 27 26 25 32 32 C 1.38546 * 119.98783 * 35.11095 * 16 15 13 33 33 C 1.38206 * 120.00127 * 179.72475 * 2 1 3 34 34 H 1.09001 * 109.47533 * 89.99806 * 1 2 3 35 35 H 1.09001 * 109.47181 * 210.00056 * 1 2 3 36 36 H 1.09005 * 109.47431 * 329.99631 * 1 2 3 37 37 H 1.08002 * 120.00113 * 359.97438 * 3 2 1 38 38 H 1.07996 * 119.99927 * 179.97438 * 4 3 2 39 39 H 1.08004 * 119.99854 * 180.02562 * 5 4 3 40 40 H 0.97001 * 120.00052 * 355.37499 * 15 13 7 41 41 H 1.07994 * 119.87789 * 0.02562 * 17 16 15 42 42 H 1.07993 * 119.88538 * 180.25834 * 18 17 16 43 43 H 1.08004 * 120.00654 * 179.76862 * 19 18 17 44 44 H 1.08005 * 119.92923 * 0.02562 * 24 23 22 45 45 H 1.07996 * 119.83981 * 180.25450 * 25 24 23 46 46 H 1.07994 * 119.91337 * 179.71916 * 26 25 24 47 47 H 0.96701 * 116.99925 * 180.02562 * 30 28 27 48 48 H 1.08000 * 120.16357 * 180.02562 * 31 27 26 49 49 H 1.08000 * 120.11979 * 359.95577 * 32 16 15 50 50 H 1.08004 * 119.99826 * 0.02562 * 33 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0000 0.0018 6 6 3.5806 -1.1969 0.0030 7 6 4.3341 -2.5020 0.0049 8 8 5.5824 -2.3303 0.6789 9 14 3.3269 -3.7994 0.8842 10 1 2.0296 -3.9778 0.1838 11 1 4.0692 -5.0855 0.8856 12 1 3.0788 -3.3690 2.2836 13 6 4.5859 -2.9388 -1.4153 14 8 5.7163 -3.1760 -1.7855 15 7 3.5550 -3.0658 -2.2741 16 6 3.7971 -3.3768 -3.6170 17 6 2.9862 -2.8416 -4.6113 18 6 3.2235 -3.1413 -5.9397 19 6 4.2606 -3.9824 -6.2878 20 6 5.0785 -4.5300 -5.2959 21 6 6.1552 -5.4037 -5.6536 22 6 7.0337 -6.1750 5.8950 23 6 8.1140 -6.9982 -6.3006 24 6 9.0396 -7.8820 -6.8644 25 6 9.1584 -7.9793 -8.2361 26 6 8.3735 -7.1978 -9.0610 27 6 7.4482 -6.3064 -8.5120 28 6 6.6093 -5.4718 -9.3967 29 8 5.8050 -4.6976 -8.9180 30 8 6.7366 -5.5693 -10.7342 31 6 7.3182 -6.2063 -7.1280 32 6 4.8413 -4.2225 -3.9545 33 6 2.1980 -1.1969 0.0057 34 1 -0.3634 0.0000 -1.0276 35 1 -0.3633 -0.8900 0.5138 36 1 -0.3634 0.8900 0.5139 37 1 1.6582 2.1327 -0.0004 38 1 4.1203 2.1327 0.0001 39 1 5.3517 0.0000 0.0026 40 1 2.6452 -2.9416 -1.9614 41 1 2.1705 -2.1859 -4.3452 42 1 2.5924 -2.7189 -6.7076 43 1 4.4403 -4.2170 -7.3266 44 1 9.6597 -8.4931 -6.2252 45 1 9.8719 -8.6665 -8.6663 46 1 8.4751 -7.2760 -10.1334 47 1 6.1665 -5.0028 -11.2719 48 1 6.6042 -5.5193 -6.6983 49 1 5.4699 -4.6422 -3.1830 50 1 1.6580 -2.1322 0.0098 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607838257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 15:30:43 Heat of formation + Delta-G solvation = 423.172895 kcal Electronic energy + Delta-G solvation = -36472.622857 eV Core-core repulsion = 31574.692410 eV Total energy + Delta-G solvation = -4897.930447 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 414.135 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.26548 -40.92623 -39.84780 -38.41672 -38.20106 -37.14861 -35.21639 -34.49665 -32.95025 -32.12858 -31.29432 -30.88688 -30.26913 -29.73374 -27.47691 -26.08277 -25.64078 -24.63763 -23.86829 -23.25502 -22.67671 -22.27873 -21.71983 -21.54519 -20.23990 -19.86130 -18.87414 -17.91365 -17.64320 -17.08820 -17.00079 -16.71371 -16.57818 -16.34238 -15.81750 -15.70400 -15.33892 -15.01855 -14.90848 -14.65806 -14.56198 -14.39182 -14.27331 -14.02190 -13.80366 -13.68336 -13.55639 -12.98615 -12.96746 -12.91416 -12.80167 -12.66273 -12.61772 -12.25788 -12.17894 -12.02753 -11.92117 -11.78388 -11.62333 -11.59900 -11.34351 -11.25184 -10.81362 -10.41619 -9.61880 -9.54481 -9.37318 -9.25365 -8.60611 -8.53362 -8.20069 -7.65126 -7.29038 -6.65250 -5.70054 -3.18135 -3.17915 -3.15364 0.17266 0.58913 0.66768 1.13954 1.20900 1.34818 1.54791 1.57971 1.64392 1.76165 1.97205 2.13423 2.24401 2.54931 2.86332 3.12923 3.75955 4.06285 4.10151 4.14578 4.24391 4.32621 4.43187 4.47376 4.53385 4.64847 4.68890 4.80097 4.82847 4.86380 4.95964 4.96998 5.01526 5.06431 5.11059 5.30126 5.36527 5.42104 5.46108 5.50884 5.61030 5.64430 5.72351 5.75680 5.79948 5.80968 6.09329 6.16531 6.22434 6.26625 6.27301 6.34486 6.35381 6.72081 6.86900 6.99723 7.02290 7.06718 7.28561 7.64731 7.70797 8.03231 Molecular weight = 414.13amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.001762 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.283014 B =15889.556009 C =18569.747356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.132 4.132 6 C -0.081 4.081 7 C -0.049 4.049 8 O -0.890 6.890 9 Si 1.020 2.980 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.188 1.188 13 C 0.458 3.542 14 O -0.583 6.583 15 N -0.668 5.668 16 C 0.187 3.813 17 C -0.383 4.383 18 C -0.046 4.046 19 C -0.359 4.359 20 C -0.170 4.170 21 C -0.362 4.362 22 C 2.000 2.000 23 C -0.485 4.485 24 C -0.140 4.140 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.219 4.219 28 C 0.515 3.485 29 O -0.564 6.564 30 O -0.497 6.497 31 C -0.074 4.074 32 C -0.262 4.262 33 C -0.164 4.164 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.403 0.597 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.136 0.864 46 H 0.130 0.870 47 H 0.419 0.581 48 H 0.192 0.808 49 H 0.071 0.929 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -13.934 97.645 98.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.086 4.086 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.082 4.082 7 C -0.145 4.145 8 O -0.837 6.837 9 Si 0.837 3.163 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.109 1.109 13 C 0.250 3.750 14 O -0.461 6.461 15 N -0.316 5.316 16 C 0.094 3.906 17 C -0.403 4.403 18 C -0.065 4.065 19 C -0.378 4.378 20 C -0.171 4.171 21 C -0.363 4.363 22 C 2.000 2.000 23 C -0.485 4.485 24 C -0.158 4.158 25 C -0.184 4.184 26 C -0.179 4.179 27 C -0.220 4.220 28 C 0.364 3.636 29 O -0.458 6.458 30 O -0.310 6.310 31 C -0.082 4.082 32 C -0.283 4.283 33 C -0.182 4.182 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.154 0.846 46 H 0.148 0.852 47 H 0.279 0.721 48 H 0.202 0.798 49 H 0.089 0.911 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.953 -14.627 98.293 99.395 hybrid contribution -0.527 1.900 -3.941 4.407 sum 1.425 -12.727 94.352 95.217 Atomic orbital electron populations 1.20827 0.88161 1.04358 1.02874 1.20277 0.97906 0.92202 0.98192 1.21232 0.93117 0.98599 1.02609 1.21361 0.95612 0.96866 1.00318 1.20941 0.98996 0.93644 1.01507 1.21246 0.94226 0.97694 0.95002 1.24413 1.02787 0.99593 0.87699 1.94777 1.26589 1.92243 1.70048 0.85189 0.73385 0.75368 0.82362 1.20336 1.20586 1.10919 1.25022 0.83786 0.75055 0.91113 1.90496 1.25872 1.50748 1.79000 1.44001 1.10345 1.70519 1.06763 1.17558 0.95655 0.93420 0.84016 1.19471 1.10450 1.18705 0.91642 1.20345 0.95231 0.95450 0.95459 1.20557 1.05968 1.14876 0.96388 1.20985 1.00051 1.01461 0.94562 1.74092 1.10958 1.18131 0.33146 1.99967 0.00001 0.00005 0.00028 1.47469 0.76856 0.76234 1.47975 1.22169 1.00212 1.01328 0.92066 1.21931 1.00082 1.00193 0.96198 1.20915 0.98885 0.99197 0.98920 1.20883 1.03305 1.03503 0.94356 1.21977 0.80256 0.79892 0.81469 1.90850 1.38225 1.39570 1.77126 1.84554 1.64050 1.64943 1.17457 1.24137 0.97788 0.99940 0.86380 1.19401 1.05514 1.10291 0.93078 1.21235 0.92681 0.99357 1.04903 0.91396 0.90086 0.89016 0.82833 0.84820 0.90613 0.76135 0.87446 0.88214 0.91563 0.86911 0.84616 0.85249 0.72070 0.79838 0.91072 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 10.01 71.23 0.71 -1.88 16 2 C -0.09 -3.06 5.88 -19.87 -0.12 -3.18 16 3 C -0.14 -4.86 9.70 22.27 0.22 -4.64 16 4 C -0.12 -5.23 10.05 22.27 0.22 -5.01 16 5 C -0.13 -7.25 9.35 22.27 0.21 -7.05 16 6 C -0.08 -4.38 4.40 -19.87 -0.09 -4.47 16 7 C -0.05 -2.99 0.70 29.11 0.02 -2.97 16 8 O -0.89 -61.33 16.19 -129.99 -2.10 -63.43 16 9 Si 1.02 40.80 24.21 68.60 1.66 42.46 16 10 H -0.28 -10.56 6.38 99.48 0.64 -9.92 16 11 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 12 H -0.19 -4.56 7.11 99.48 0.71 -3.86 16 13 C 0.46 34.60 5.79 87.66 0.51 35.11 16 14 O -0.58 -52.36 13.94 15.93 0.22 -52.14 16 15 N -0.67 -48.67 4.90 -303.61 -1.49 -50.16 16 16 C 0.19 15.92 6.29 38.11 0.24 16.16 16 17 C -0.38 -30.95 9.96 22.46 0.22 -30.73 16 18 C -0.05 -3.91 10.02 22.21 0.22 -3.69 16 19 C -0.36 -34.38 9.76 22.57 0.22 -34.16 16 20 C -0.17 -17.12 5.73 -21.33 -0.12 -17.24 16 21 C -0.36 -36.97 16.03 65.92 1.06 -35.91 16 22 C 2.00 -263.44 36.32 113.37 4.12 -259.32 16 23 C -0.49 -43.25 14.09 22.96 0.32 -42.93 16 24 C -0.14 -10.40 10.10 22.61 0.23 -10.17 16 25 C -0.17 -11.09 10.01 22.19 0.22 -10.87 16 26 C -0.16 -11.25 9.61 22.60 0.22 -11.04 16 27 C -0.22 -17.76 5.87 -20.13 -0.12 -17.88 16 28 C 0.52 38.64 8.27 70.34 0.58 39.22 16 29 O -0.56 -47.39 14.81 19.94 0.30 -47.09 16 30 O -0.50 -28.75 12.67 -56.10 -0.71 -29.46 16 31 C -0.07 -6.78 7.74 19.69 0.15 -6.63 16 32 C -0.26 -25.16 8.41 22.68 0.19 -24.97 16 33 C -0.16 -7.11 7.39 22.27 0.16 -6.95 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 36 H 0.09 1.67 8.09 -2.38 -0.02 1.65 16 37 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.08 4.77 7.48 -2.91 -0.02 4.75 16 40 H 0.40 25.05 7.10 -92.71 -0.66 24.40 16 41 H 0.11 7.64 8.06 -2.91 -0.02 7.62 16 42 H 0.10 7.50 8.06 -2.91 -0.02 7.47 16 43 H 0.07 6.45 5.59 -2.91 -0.02 6.43 16 44 H 0.11 7.35 8.06 -2.91 -0.02 7.33 16 45 H 0.14 7.35 8.06 -2.91 -0.02 7.33 16 46 H 0.13 7.85 7.60 -2.91 -0.02 7.83 16 47 H 0.42 18.89 9.11 -74.06 -0.67 18.22 16 48 H 0.19 18.95 1.24 -101.81 -0.13 18.82 16 49 H 0.07 7.10 6.22 -2.91 -0.02 7.09 16 50 H 0.13 5.13 5.26 -2.91 -0.02 5.12 16 Total: -1.00 -546.44 461.03 7.78 -538.66 By element: Atomic # 1 Polarization: 112.06 SS G_CDS: 0.30 Total: 112.36 kcal Atomic # 6 Polarization: -460.80 SS G_CDS: 9.61 Total: -451.19 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -1.49 Total: -50.16 kcal Atomic # 8 Polarization: -189.83 SS G_CDS: -2.30 Total: -192.12 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.66 Total: 42.46 kcal Total: -546.44 7.78 -538.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607838257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 961.830 kcal (2) G-P(sol) polarization free energy of solvation -546.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 415.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -538.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 423.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds