Wall clock time and date at job start Thu Mar 26 2020 14:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 120.00263 * 2 1 4 4 C 1.38231 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99964 * 359.97280 * 4 3 2 6 6 C 1.50710 * 119.99846 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47027 * 220.20148 * 6 5 4 8 8 Si 1.86296 * 109.47024 * 340.20024 * 6 5 4 9 9 H 1.48504 * 109.47380 * 204.76113 * 8 6 5 10 10 H 1.48504 * 109.47410 * 324.76280 * 8 6 5 11 11 H 1.48506 * 109.47142 * 84.76204 * 8 6 5 12 12 C 1.50696 * 109.47219 * 100.20144 * 6 5 4 13 13 O 1.21276 * 119.99967 * 167.54213 * 12 6 5 14 14 N 1.34785 * 119.99822 * 347.53940 * 12 6 5 15 15 C 1.46492 * 120.00290 * 353.46436 * 14 12 6 16 16 C 1.50691 * 109.47500 * 188.34972 * 15 14 12 17 17 C 1.38364 * 119.84702 * 291.06124 * 16 15 14 18 18 C 1.37950 * 120.14811 * 179.76558 * 17 16 15 19 19 C 1.39626 * 119.85099 * 0.52500 * 18 17 16 20 20 C 1.43195 * 120.15638 * 179.70824 * 19 18 17 21 21 N 8.39071 * 86.43954 * 82.47731 * 2 1 3 22 22 C 1.39635 * 119.69536 * 359.72443 * 19 18 17 23 23 C 1.37943 * 119.85061 * 0.02562 * 22 19 18 24 24 C 1.46497 * 119.99937 * 173.45884 * 14 12 6 25 25 C 1.50707 * 109.47117 * 317.50138 * 24 14 12 26 26 C 1.38277 * 119.98097 * 272.27015 * 25 24 14 27 27 C 1.38224 * 120.04819 * 180.27926 * 26 25 24 28 28 C 1.38216 * 120.02783 * 359.97438 * 27 26 25 29 29 C 1.38443 * 119.97330 * 0.02562 * 28 27 26 30 30 F 1.35100 * 120.02687 * 180.02562 * 29 28 27 31 31 C 1.38173 * 119.99313 * 92.54789 * 25 24 14 32 32 C 1.38239 * 120.00245 * 0.27875 * 5 4 3 33 33 C 1.38233 * 119.99735 * 359.51474 * 32 5 4 34 34 H 1.08996 * 109.47347 * 90.00224 * 1 2 3 35 35 H 1.09005 * 109.46968 * 210.00470 * 1 2 3 36 36 H 1.08997 * 109.46693 * 329.99478 * 1 2 3 37 37 H 1.08002 * 119.99706 * 359.97438 * 3 2 1 38 38 H 1.08006 * 119.99853 * 180.02562 * 4 3 2 39 39 H 1.09005 * 109.46769 * 308.35281 * 15 14 12 40 40 H 1.09007 * 109.47501 * 68.34660 * 15 14 12 41 41 H 1.07998 * 119.92491 * 359.97438 * 17 16 15 42 42 H 1.08007 * 120.07426 * 180.25110 * 18 17 16 43 43 H 1.08008 * 120.07443 * 179.97438 * 22 19 18 44 44 H 1.07992 * 119.92865 * 179.97438 * 23 22 19 45 45 H 1.08995 * 109.47703 * 197.49970 * 24 14 12 46 46 H 1.09001 * 109.47268 * 77.48955 * 24 14 12 47 47 H 1.07994 * 119.97773 * 0.25924 * 26 25 24 48 48 H 1.07996 * 119.98382 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.01842 * 179.97438 * 28 27 26 50 50 H 1.08006 * 120.00846 * 359.69823 * 31 25 24 51 51 H 1.07994 * 119.99484 * 179.72809 * 32 5 4 52 52 H 1.07995 * 119.99969 * 180.27495 * 33 32 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7788 0.0000 0.0028 7 8 6.2557 -1.0294 -0.8660 8 14 6.4001 1.6524 -0.5925 9 1 7.7643 1.4939 -1.1576 10 1 5.4878 2.1760 -1.6407 11 1 6.4437 2.6044 0.5465 12 6 6.2800 -0.2509 1.4016 13 8 7.4489 -0.5145 1.5887 14 7 5.4292 -0.1824 2.4448 15 6 4.0529 0.2749 2.2387 16 6 3.3781 0.4553 3.5739 17 6 3.0828 -0.6506 4.3512 18 6 2.4695 -0.4923 5.5768 19 6 2.1369 0.7867 6.0274 20 6 1.4946 0.9581 7.2957 21 7 0.9859 1.0964 8.3024 22 6 2.4333 1.8979 5.2355 23 6 3.0513 1.7257 4.0144 24 6 5.8809 -0.5652 3.7847 25 6 6.7101 -1.8206 3.6958 26 6 6.0973 -3.0589 3.7514 27 6 6.8570 -4.2111 3.6758 28 6 8.2303 -4.1267 3.5438 29 6 8.8449 -2.8875 3.4880 30 9 10.1871 -2.8037 3.3585 31 6 8.0829 -1.7338 3.5644 32 6 3.5805 -1.1972 -0.0036 33 6 2.1982 -1.1972 0.0002 34 1 -0.3634 0.0000 -1.0276 35 1 -0.3633 -0.8900 0.5139 36 1 -0.3632 0.8899 0.5139 37 1 1.6582 2.1325 -0.0004 38 1 4.1205 2.1325 0.0010 39 1 4.0618 1.2251 1.7047 40 1 3.5077 -0.4656 1.6532 41 1 3.3359 -1.6397 3.9992 42 1 2.2432 -1.3561 6.1844 43 1 2.1783 2.8901 5.5779 44 1 3.2807 2.5842 3.4007 45 1 5.0155 -0.7459 4.4222 46 1 6.4831 0.2384 4.2087 47 1 5.0244 -3.1258 3.8544 48 1 6.3773 -5.1777 3.7198 49 1 8.8238 -5.0271 3.4851 50 1 8.5612 -0.7664 3.5205 51 1 4.1206 -2.1324 -0.0072 52 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488029168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 14:33:51 Heat of formation + Delta-G solvation = 12.795401 kcal Electronic energy + Delta-G solvation = -41701.420848 eV Core-core repulsion = 36705.330498 eV Total energy + Delta-G solvation = -4996.090350 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 417.153 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.86646 -42.26991 -40.41740 -40.22312 -39.13220 -37.65476 -36.34228 -35.05591 -33.15025 -32.23733 -32.12542 -31.96038 -31.69482 -31.36035 -28.57102 -27.75371 -26.95305 -24.70817 -23.85464 -23.60080 -23.49699 -22.98805 -22.62120 -21.56161 -20.03510 -19.86342 -18.48173 -17.63800 -17.33307 -17.19229 -17.07692 -16.86962 -16.56392 -16.42553 -16.22525 -16.04337 -15.71071 -15.53194 -15.46818 -15.19944 -14.98425 -14.77482 -14.69962 -14.41388 -14.32791 -14.21157 -14.12956 -14.04638 -13.89497 -13.80716 -13.56229 -13.48270 -13.42574 -13.06346 -12.88455 -12.85651 -12.70956 -12.36075 -12.20438 -12.12919 -12.02106 -11.98846 -11.89227 -11.75333 -11.45535 -11.38731 -10.94334 -9.89715 -9.80022 -9.76340 -9.64056 -9.55816 -9.01189 -8.81227 -8.28578 -7.77886 -0.23903 0.21387 0.37562 0.45110 0.59587 0.70493 1.20068 1.36667 1.37501 1.65294 1.87811 1.99693 2.31149 2.65422 2.83151 2.89600 2.99560 3.09271 3.37029 3.72200 3.77038 3.86773 3.92794 4.03247 4.11042 4.12091 4.22395 4.26104 4.33325 4.36612 4.42818 4.47250 4.49228 4.57742 4.61705 4.69175 4.76105 4.78799 4.84239 4.88674 4.97469 5.01433 5.07080 5.08103 5.13229 5.17383 5.18477 5.23705 5.26052 5.36521 5.38015 5.39380 5.49663 5.59919 5.66418 5.73453 5.86179 5.88439 5.91507 6.03274 6.07610 6.35114 6.48277 6.63635 7.53102 7.82869 Molecular weight = 417.15amu Principal moments of inertia in cm(-1) A = 0.005422 B = 0.004175 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5162.953136 B = 6704.929030 C = 9822.862437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.095 4.095 3 C -0.110 4.110 4 C -0.153 4.153 5 C -0.079 4.079 6 C -0.009 4.009 7 O -0.892 6.892 8 Si 0.940 3.060 9 H -0.328 1.328 10 H -0.243 1.243 11 H -0.251 1.251 12 C 0.497 3.503 13 O -0.579 6.579 14 N -0.602 5.602 15 C 0.097 3.903 16 C -0.067 4.067 17 C -0.117 4.117 18 C -0.057 4.057 19 C -0.038 4.038 20 C 0.283 3.717 21 N -0.468 5.468 22 C -0.055 4.055 23 C -0.106 4.106 24 C 0.138 3.862 25 C -0.084 4.084 26 C -0.116 4.116 27 C -0.102 4.102 28 C -0.156 4.156 29 C 0.049 3.951 30 F -0.158 7.158 31 C -0.099 4.099 32 C -0.109 4.109 33 C -0.124 4.124 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.134 0.866 46 H 0.059 0.941 47 H 0.154 0.846 48 H 0.167 0.833 49 H 0.151 0.849 50 H 0.110 0.890 51 H 0.080 0.920 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.581 2.064 11.396 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.171 4.171 5 C -0.080 4.080 6 C -0.109 4.109 7 O -0.840 6.840 8 Si 0.767 3.233 9 H -0.258 1.258 10 H -0.167 1.167 11 H -0.177 1.177 12 C 0.289 3.711 13 O -0.459 6.459 14 N -0.339 5.339 15 C -0.022 4.022 16 C -0.068 4.068 17 C -0.136 4.136 18 C -0.077 4.077 19 C -0.042 4.042 20 C -0.031 4.031 21 N -0.144 5.144 22 C -0.075 4.075 23 C -0.124 4.124 24 C 0.017 3.983 25 C -0.085 4.085 26 C -0.135 4.135 27 C -0.119 4.119 28 C -0.175 4.175 29 C 0.030 3.970 30 F -0.137 7.137 31 C -0.118 4.118 32 C -0.127 4.127 33 C -0.142 4.142 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.173 0.827 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.172 0.828 43 H 0.172 0.828 44 H 0.165 0.835 45 H 0.151 0.849 46 H 0.077 0.923 47 H 0.171 0.829 48 H 0.185 0.815 49 H 0.168 0.832 50 H 0.128 0.872 51 H 0.098 0.902 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.369 2.758 12.578 20.050 hybrid contribution 1.956 -0.561 -1.074 2.301 sum -13.412 2.197 11.504 17.806 Atomic orbital electron populations 1.20753 0.88692 1.03816 1.02711 1.20085 0.97401 0.92064 0.99926 1.21137 0.92051 0.99092 1.00518 1.20939 0.96052 0.96376 1.03725 1.21038 0.97545 0.94238 0.95191 1.23167 0.91237 1.06493 0.90009 1.95020 1.83461 1.47260 1.58214 0.86436 0.78227 0.77155 0.81498 1.25815 1.16655 1.17700 1.23211 0.85642 0.73982 0.88249 1.90444 1.19760 1.50104 1.85638 1.48172 1.12115 1.66815 1.06759 1.23078 0.81430 1.02670 0.95064 1.20424 0.96647 0.94756 0.95001 1.21045 0.98911 0.99205 0.94415 1.21276 0.94995 0.96067 0.95356 1.16039 1.04002 0.95630 0.88540 1.25885 0.92297 0.92356 0.92582 1.81306 1.11437 1.08895 1.12733 1.21329 0.95019 0.98535 0.92621 1.21168 0.98321 0.96766 0.96164 1.20858 0.99147 0.92680 0.85640 1.20006 0.92605 0.96686 0.99165 1.21381 1.01287 0.91154 0.99631 1.21310 0.92146 1.00114 0.98362 1.21383 0.96975 0.95761 1.03385 1.18076 0.76850 0.95915 1.06148 1.91404 1.30996 1.97359 1.93955 1.20987 0.95190 0.96901 0.98766 1.20575 0.94390 0.96962 1.00810 1.21155 0.92269 0.99113 1.01652 0.91018 0.90832 0.89914 0.82717 0.86361 0.88289 0.86927 0.84377 0.82788 0.82787 0.83511 0.84866 0.92262 0.82867 0.81538 0.83171 0.87207 0.90158 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.01 71.23 0.71 -0.83 16 2 C -0.09 -2.23 5.72 -19.86 -0.11 -2.34 16 3 C -0.11 -2.71 9.30 22.27 0.21 -2.50 16 4 C -0.15 -5.13 5.08 22.27 0.11 -5.02 16 5 C -0.08 -3.43 2.50 -19.86 -0.05 -3.48 16 6 C -0.01 -0.47 0.64 29.10 0.02 -0.45 16 7 O -0.89 -64.20 16.89 -136.42 -2.30 -66.50 16 8 Si 0.94 47.27 24.10 68.60 1.65 48.92 16 9 H -0.33 -19.46 7.11 99.48 0.71 -18.75 16 10 H -0.24 -10.83 7.00 99.48 0.70 -10.14 16 11 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 12 C 0.50 25.57 5.50 87.65 0.48 26.05 16 13 O -0.58 -33.93 12.59 9.55 0.12 -33.81 16 14 N -0.60 -22.72 3.17 -830.52 -2.63 -25.35 16 15 C 0.10 2.86 3.63 85.63 0.31 3.17 16 16 C -0.07 -1.35 4.46 -19.81 -0.09 -1.44 16 17 C -0.12 -1.92 6.93 22.23 0.15 -1.77 16 18 C -0.06 -0.72 9.76 22.54 0.22 -0.50 16 19 C -0.04 -0.53 5.73 -21.36 -0.12 -0.66 16 20 C 0.28 5.01 15.33 88.33 1.35 6.36 16 21 N -0.47 -10.77 18.54 19.01 0.35 -10.42 16 22 C -0.05 -0.68 9.76 22.54 0.22 -0.46 16 23 C -0.11 -1.64 9.65 22.23 0.21 -1.42 16 24 C 0.14 4.35 5.49 85.64 0.47 4.82 16 25 C -0.08 -2.98 4.42 -19.87 -0.09 -3.06 16 26 C -0.12 -3.42 9.71 22.28 0.22 -3.20 16 27 C -0.10 -2.82 10.04 22.26 0.22 -2.60 16 28 C -0.16 -5.05 10.03 22.31 0.22 -4.82 16 29 C 0.05 1.95 7.30 22.38 0.16 2.11 16 30 F -0.16 -6.51 17.27 44.97 0.78 -5.74 16 31 C -0.10 -4.09 7.11 22.31 0.16 -3.93 16 32 C -0.11 -4.44 7.48 22.27 0.17 -4.27 16 33 C -0.12 -3.63 9.02 22.27 0.20 -3.43 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 36 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 37 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.12 3.78 5.21 -2.91 -0.02 3.77 16 39 H 0.10 2.98 4.18 -5.76 -0.02 2.96 16 40 H 0.11 3.56 2.75 -2.43 -0.01 3.56 16 41 H 0.14 2.19 7.29 -2.91 -0.02 2.17 16 42 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.15 1.94 7.96 -2.91 -0.02 1.91 16 45 H 0.13 3.08 3.78 -2.39 -0.01 3.08 16 46 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 47 H 0.15 3.35 7.51 -2.91 -0.02 3.33 16 48 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 49 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 50 H 0.11 4.90 7.40 -2.91 -0.02 4.87 16 51 H 0.08 3.92 7.78 -2.91 -0.02 3.89 16 52 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -90.80 422.94 5.06 -85.74 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.73 Total: 10.82 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.37 Total: -3.66 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -2.28 Total: -35.77 kcal Atomic # 8 Polarization: -98.13 SS G_CDS: -2.18 Total: -100.31 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.78 Total: -5.74 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.65 Total: 48.92 kcal Total: -90.80 5.06 -85.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488029168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.531 kcal (2) G-P(sol) polarization free energy of solvation -90.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds