Wall clock time and date at job start Thu Mar 26 2020 14:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 108.94056 * 2 1 4 4 C 1.53235 * 108.96821 * 241.35252 * 2 1 3 5 5 S 1.81950 * 104.47791 * 239.31497 * 4 2 1 6 6 C 1.76666 * 96.21257 * 359.81290 * 5 4 2 7 7 N 1.30291 * 125.35817 * 180.20574 * 6 5 4 8 8 C 1.46498 * 120.00245 * 185.30256 * 7 6 5 9 9 C 1.50694 * 109.47000 * 187.49198 * 8 7 6 10 10 C 1.38238 * 119.99907 * 274.72545 * 9 8 7 11 11 C 1.38240 * 119.99709 * 179.74360 * 10 9 8 12 12 C 1.38231 * 119.99941 * 0.52961 * 11 10 9 13 13 C 1.38234 * 120.00458 * 359.74520 * 12 11 10 14 14 C 1.38233 * 120.00297 * 94.99861 * 9 8 7 15 15 N 1.36617 * 109.29177 * 0.33903 * 6 5 4 16 16 C 1.34784 * 121.03570 * 179.85853 * 15 6 5 17 17 O 1.21255 * 119.99941 * 331.51136 * 16 15 6 18 18 C 1.50695 * 119.99795 * 151.50727 * 16 15 6 19 19 O 1.42900 * 109.46909 * 180.62537 * 18 16 15 20 20 Si 1.86303 * 109.47127 * 300.62090 * 18 16 15 21 21 H 1.48504 * 109.47073 * 206.77959 * 20 18 16 22 22 H 1.48499 * 109.47170 * 326.78272 * 20 18 16 23 23 H 1.48492 * 109.46975 * 86.78162 * 20 18 16 24 24 C 1.50694 * 109.47197 * 60.62365 * 18 16 15 25 25 C 1.33351 * 125.19179 * 80.23982 * 24 18 16 26 26 C 1.38462 * 114.93256 * 180.16834 * 25 24 18 27 27 C 1.33504 * 114.88620 * 359.49262 * 26 25 24 28 28 Cl 1.73600 * 125.21410 * 180.28751 * 27 26 25 29 29 S 1.75882 * 125.18856 * 259.88008 * 24 18 16 30 30 H 1.08999 * 109.46737 * 303.13214 * 1 2 3 31 31 H 1.09001 * 109.46717 * 63.12885 * 1 2 3 32 32 H 1.08995 * 109.47450 * 183.13100 * 1 2 3 33 33 H 1.09000 * 109.47011 * 180.69350 * 3 2 1 34 34 H 1.08992 * 109.47120 * 300.70191 * 3 2 1 35 35 H 1.09001 * 109.46786 * 60.70020 * 3 2 1 36 36 H 1.09000 * 110.43262 * 358.06719 * 4 2 1 37 37 H 1.09001 * 110.43180 * 120.43810 * 4 2 1 38 38 H 1.09000 * 109.46593 * 307.49143 * 8 7 6 39 39 H 1.08998 * 109.46975 * 67.49202 * 8 7 6 40 40 H 1.07997 * 119.99916 * 359.97438 * 10 9 8 41 41 H 1.08005 * 119.99896 * 180.29026 * 11 10 9 42 42 H 1.08001 * 119.99891 * 179.76339 * 12 11 10 43 43 H 1.07993 * 120.00386 * 180.02562 * 13 12 11 44 44 H 1.08007 * 119.99837 * 359.97438 * 14 9 8 45 45 H 1.07999 * 122.53269 * 359.95175 * 25 24 18 46 46 H 1.07998 * 122.56005 * 179.75331 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0266 1.4471 0.0000 4 6 2.0281 -0.6947 -1.2717 5 16 3.0262 -2.0905 -0.6665 6 6 2.7949 -1.7593 1.0534 7 7 3.3007 -2.4573 2.0303 8 6 2.9392 -2.1476 3.4158 9 6 3.7897 -2.9667 4.3520 10 6 3.4087 -4.2530 4.6853 11 6 4.1918 -5.0063 5.5400 12 6 5.3501 -4.4693 6.0698 13 6 5.7282 -3.1810 5.7410 14 6 4.9481 -2.4298 4.8819 15 7 1.9997 -0.6578 1.1980 16 6 1.6680 -0.1957 2.4199 17 8 1.6030 -0.9592 3.3597 18 6 1.3780 1.2697 2.6181 19 8 1.0675 1.5122 3.9917 20 14 2.8734 2.2697 2.1337 21 1 2.8773 3.5503 2.8856 22 1 4.1053 1.5044 2.4529 23 1 2.8295 2.5516 0.6764 24 6 0.2061 1.6705 1.7597 25 6 -1.0755 1.4603 2.0622 26 6 -1.9802 1.9131 1.1169 27 6 -1.4320 2.5011 0.0510 28 17 -2.3129 3.1698 -1.2871 29 16 0.3197 2.4948 0.2102 30 1 -0.3633 0.5617 0.8606 31 1 -0.3633 0.4645 -0.9167 32 1 -0.3634 -1.0261 0.0561 33 1 3.1165 1.4572 -0.0124 34 1 1.6483 1.9611 -0.8836 35 1 1.6688 1.9540 0.8962 36 1 1.1864 -1.0566 -1.8622 37 1 2.6412 -0.0138 -1.8621 38 1 3.1063 -1.0875 3.6065 39 1 1.8878 -2.3848 3.5786 40 1 2.5012 -4.6708 4.2752 41 1 3.8965 -6.0129 5.7968 42 1 5.9599 -5.0564 6.7405 43 1 6.6334 -2.7616 6.1546 44 1 5.2438 -1.4233 4.6246 45 1 -1.3843 0.9705 2.9739 46 1 -3.0481 1.8032 1.2348 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757799694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 14:59:24 Heat of formation + Delta-G solvation = 310.568408 kcal Electronic energy + Delta-G solvation = -36309.973588 eV Core-core repulsion = 31843.895123 eV Total energy + Delta-G solvation = -4466.078465 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 423.052 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98461 -39.31308 -38.46715 -37.56009 -36.25540 -35.17081 -33.01991 -32.60197 -30.61091 -30.53215 -29.79219 -28.18740 -27.22429 -26.11230 -25.21358 -23.58147 -22.20031 -21.78166 -21.60359 -20.94815 -19.27135 -17.95086 -17.84390 -17.47525 -16.98211 -16.32250 -16.22918 -15.92141 -15.55936 -14.99042 -14.70338 -14.48940 -14.07488 -14.00016 -13.56226 -13.40001 -13.30145 -13.12159 -13.01681 -12.85659 -12.76811 -12.65704 -12.43412 -12.18091 -12.02516 -11.76080 -11.72200 -11.39269 -11.35624 -11.01761 -10.87284 -10.75970 -10.57715 -10.52701 -10.46596 -10.24194 -9.62409 -9.40874 -9.30600 -8.60578 -8.56724 -8.49918 -8.16294 -7.66736 -7.51779 -7.40696 -7.38329 -6.51269 -5.93843 1.31548 1.42726 1.75864 1.78363 1.79840 2.03010 2.21731 2.32739 2.51331 2.82198 2.86280 3.03949 3.19248 3.36214 3.38758 4.00091 4.14403 4.16614 4.60303 4.76302 4.94795 5.10239 5.18920 5.23248 5.26027 5.33023 5.39684 5.44935 5.63176 5.71625 5.77079 5.84596 5.87998 5.97907 6.02387 6.05844 6.09358 6.12360 6.19204 6.30905 6.45609 6.52809 6.55499 6.70050 6.78374 6.80564 6.94368 6.98797 7.06298 7.14517 7.36942 7.43613 8.08870 8.72578 9.35024 Molecular weight = 423.05amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.003003 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.093350 B = 9322.826503 C =10122.282189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.180 3.820 3 C -0.194 4.194 4 C -0.104 4.104 5 S -0.064 6.064 6 C 0.355 3.645 7 N -0.526 5.526 8 C 0.087 3.913 9 C -0.064 4.064 10 C -0.105 4.105 11 C -0.125 4.125 12 C -0.134 4.134 13 C -0.124 4.124 14 C -0.111 4.111 15 N -0.582 5.582 16 C 0.451 3.549 17 O -0.435 6.435 18 C 0.067 3.933 19 O -0.778 6.778 20 Si 0.765 3.235 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.174 1.174 24 C -0.141 4.141 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.222 4.222 28 Cl -0.059 7.059 29 S 0.142 5.858 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.146 0.854 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 -2.563 -10.786 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C 0.092 3.908 3 C -0.259 4.259 4 C -0.253 4.253 5 S 0.167 5.833 6 C -0.030 4.030 7 N -0.253 5.253 8 C -0.041 4.041 9 C -0.065 4.065 10 C -0.124 4.124 11 C -0.143 4.143 12 C -0.152 4.152 13 C -0.142 4.142 14 C -0.130 4.130 15 N -0.321 5.321 16 C 0.245 3.755 17 O -0.307 6.307 18 C -0.039 4.039 19 O -0.720 6.720 20 Si 0.589 3.411 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.101 1.101 24 C -0.258 4.258 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.360 4.360 28 Cl -0.031 7.031 29 S 0.408 5.592 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.164 0.836 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.802 -3.311 -11.514 12.570 hybrid contribution -2.551 1.039 1.908 3.350 sum 1.251 -2.272 -9.607 9.951 Atomic orbital electron populations 1.24475 0.92208 1.04610 1.08938 1.20062 0.96566 0.91079 0.83044 1.22554 1.02773 0.95785 1.04794 1.24539 1.03198 0.98238 0.99315 1.86077 1.64920 1.37483 0.94812 1.24396 0.92425 0.87265 0.98932 1.72498 1.24089 1.28703 0.99991 1.22817 0.98398 0.97714 0.85209 1.20616 0.94631 0.94423 0.96862 1.21004 0.99742 0.93875 0.97766 1.21062 0.95496 0.99504 0.98266 1.20993 0.97417 0.95778 1.01035 1.21057 0.99665 0.94756 0.98688 1.21098 0.94630 0.99779 0.97503 1.46607 1.50566 1.26793 1.08137 1.24021 0.77149 0.94337 0.80017 1.91074 1.40844 1.53892 1.44939 1.22429 0.95047 0.87957 0.98484 1.95173 1.85190 1.85987 1.05696 0.90734 0.82627 0.84680 0.83107 1.18716 1.18673 1.10069 1.26628 1.02193 1.02421 0.94563 1.19633 0.91237 1.04037 1.00272 1.20080 1.00722 1.01308 0.93167 1.27547 1.04252 1.09396 0.94777 1.98281 1.75884 1.84067 1.44885 1.87852 0.93079 1.61330 1.16896 0.84481 0.90351 0.92680 0.87490 0.85802 0.90088 0.86165 0.86416 0.89342 0.83611 0.86586 0.86627 0.86739 0.86647 0.86889 0.83639 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -3.79 5.85 37.16 0.22 -3.57 16 2 C 0.18 2.75 1.02 -132.76 -0.14 2.62 16 3 C -0.19 -2.86 2.48 37.16 0.09 -2.77 16 4 C -0.10 -1.17 6.59 37.28 0.25 -0.92 16 5 S -0.06 -0.92 23.23 -107.50 -2.50 -3.42 16 6 C 0.35 6.81 8.11 -89.09 -0.72 6.08 16 7 N -0.53 -11.02 10.61 -115.20 -1.22 -12.25 16 8 C 0.09 1.92 3.88 -5.20 -0.02 1.90 16 9 C -0.06 -1.28 5.46 -104.63 -0.57 -1.85 16 10 C -0.11 -1.85 9.72 -39.58 -0.38 -2.23 16 11 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 12 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 13 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 14 C -0.11 -2.09 9.68 -39.58 -0.38 -2.47 16 15 N -0.58 -11.30 2.24 -103.48 -0.23 -11.53 16 16 C 0.45 10.64 4.45 -10.98 -0.05 10.59 16 17 O -0.44 -11.21 9.06 -14.33 -0.13 -11.34 16 18 C 0.07 1.68 0.72 -29.04 -0.02 1.66 16 19 O -0.78 -24.80 16.91 -55.14 -0.93 -25.73 16 20 Si 0.77 16.89 22.58 -169.99 -3.84 13.05 16 21 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.26 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.17 -2.80 3.12 -7.64 -0.02 -2.82 16 24 C -0.14 -2.97 2.67 -36.02 -0.10 -3.07 16 25 C -0.12 -2.53 8.32 -41.21 -0.34 -2.87 16 26 C -0.12 -2.07 9.53 -41.16 -0.39 -2.46 16 27 C -0.22 -3.52 5.81 29.08 0.17 -3.35 16 28 Cl -0.06 -0.81 29.29 -51.86 -1.52 -2.33 16 29 S 0.14 2.28 12.25 -107.50 -1.32 0.96 16 30 H 0.14 2.47 0.63 -127.46 -0.08 2.39 16 31 H 0.08 1.03 6.65 -51.93 -0.35 0.68 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 1.46 5.85 -51.93 -0.30 1.16 16 34 H 0.12 1.42 5.75 -18.16 -0.10 1.31 16 35 H 0.08 1.51 0.00 0.00 0.00 1.51 16 36 H 0.12 1.09 7.63 -51.93 -0.40 0.70 16 37 H 0.12 0.97 7.63 -51.93 -0.40 0.57 16 38 H 0.09 2.25 5.26 0.03 0.00 2.25 16 39 H 0.15 3.44 5.72 -0.91 -0.01 3.43 16 40 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 45 H 0.15 3.22 8.06 -52.49 -0.42 2.80 16 46 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -32.32 367.61 -13.97 -46.29 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.23 Total: 10.43 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.59 Total: -9.69 kcal Atomic # 7 Polarization: -22.32 SS G_CDS: -1.45 Total: -23.78 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.06 Total: -37.07 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -3.84 Total: 13.05 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -3.81 Total: -2.45 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.52 Total: -2.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.32 -13.97 -46.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757799694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 356.863 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 324.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 310.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds