Wall clock time and date at job start Thu Mar 26 2020 17:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21287 * 1 3 3 N 1.34773 * 120.00206 * 2 1 4 4 C 1.40124 * 120.00092 * 354.46354 * 3 2 1 5 5 C 1.38720 * 120.08928 * 335.19702 * 4 3 2 6 6 C 1.38200 * 119.98330 * 180.02562 * 5 4 3 7 Xx 1.81006 * 119.91566 * 180.02562 * 6 5 4 8 7 F 6.65053 * 41.00551 * 327.38022 * 2 1 3 9 8 F 1.60997 * 89.99977 * 134.99754 * 7 6 5 10 9 F 1.61000 * 89.99702 * 314.99656 * 7 6 5 11 10 F 1.61000 * 89.99766 * 224.99858 * 7 6 5 12 11 F 1.60993 * 90.00066 * 44.99473 * 7 6 5 13 12 C 1.38271 * 120.16463 * 359.97342 * 6 5 4 14 13 C 1.38245 * 120.18061 * 0.02832 * 13 6 5 15 14 C 1.38551 * 120.01302 * 359.71916 * 14 13 6 16 15 O 1.35977 * 120.08188 * 180.02562 * 15 14 13 17 16 C 1.50704 * 119.99826 * 179.72930 * 2 1 3 18 17 O 1.42898 * 109.47227 * 4.99131 * 17 2 1 19 18 Si 1.86303 * 109.46916 * 244.99541 * 17 2 1 20 19 H 1.48501 * 109.47000 * 59.99997 * 19 17 2 21 20 H 1.48501 * 109.47088 * 179.97438 * 19 17 2 22 21 H 1.48495 * 109.47253 * 300.00078 * 19 17 2 23 22 C 1.52996 * 109.47316 * 124.99895 * 17 2 1 24 23 C 1.50699 * 109.47129 * 180.02562 * 23 17 2 25 24 C 1.38240 * 119.99773 * 270.26844 * 24 23 17 26 25 C 1.38234 * 120.00374 * 179.97438 * 25 24 23 27 26 C 1.38229 * 119.99531 * 359.97438 * 26 25 24 28 27 C 1.38236 * 120.00697 * 359.97438 * 27 26 25 29 28 C 1.38232 * 120.00598 * 89.99727 * 24 23 17 30 29 H 0.97006 * 120.00144 * 174.46936 * 3 2 1 31 30 H 1.08005 * 120.00926 * 359.97438 * 5 4 3 32 31 H 1.08002 * 119.90903 * 179.97438 * 13 6 5 33 32 H 1.07999 * 119.98889 * 179.97438 * 14 13 6 34 33 H 0.96696 * 114.00229 * 89.99807 * 16 15 14 35 34 H 1.09004 * 109.47173 * 299.99363 * 23 17 2 36 35 H 1.09001 * 109.47521 * 59.99579 * 23 17 2 37 36 H 1.08007 * 119.99533 * 359.97438 * 25 24 23 38 37 H 1.07991 * 119.99883 * 179.97438 * 26 25 24 39 38 H 1.08009 * 120.00037 * 179.97438 * 27 26 25 40 39 H 1.07998 * 120.00604 * 179.97438 * 28 27 26 41 40 H 1.08001 * 119.99543 * 0.22309 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2129 0.0000 0.0000 3 7 1.8868 1.1671 0.0000 4 6 1.1911 2.3779 -0.1171 5 6 -0.0535 2.4085 -0.7289 6 6 -0.7374 3.6039 -0.8437 7 9 -3.8059 3.6753 -2.3523 8 9 -2.9225 4.5752 -0.4561 9 9 -1.8007 2.7080 -2.8274 10 9 -1.9252 4.9528 -2.4678 11 9 -2.7980 2.3304 -0.8157 12 6 -0.1846 4.7709 -0.3494 13 6 1.0553 4.7482 0.2615 14 6 1.7452 3.5530 0.3853 15 8 2.9646 3.5290 0.9864 16 6 1.9664 -1.3051 0.0062 17 8 1.0422 -2.3893 -0.1059 18 14 2.9198 -1.4642 1.5988 19 1 1.9769 -1.4315 2.7456 20 1 3.6618 -2.7505 1.6052 21 1 3.8802 -0.3376 1.7154 22 6 2.9379 -1.3388 -1.1753 23 6 3.6908 -2.6442 -1.1694 24 6 4.8829 -2.7514 -0.4777 25 6 5.5734 -3.9489 -0.4718 26 6 5.0716 -5.0393 -1.1572 27 6 3.8791 -4.9325 -1.8482 28 6 3.1868 -3.7360 -1.8511 29 1 2.8534 1.1691 0.0810 30 1 -0.4875 1.4985 -1.1162 31 1 -0.7225 5.7029 -0.4417 32 1 1.4844 5.6616 0.6461 33 1 2.9297 3.3791 1.9410 34 1 2.3801 -1.2458 -2.1072 35 1 3.6428 -0.5118 -1.0898 36 1 5.2747 -1.8994 0.0582 37 1 6.5048 -4.0324 0.0683 38 1 5.6113 -5.9749 -1.1530 39 1 3.4872 -5.7844 -2.3841 40 1 2.2551 -3.6525 -2.3909 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181378607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 17:42:59 Heat of formation + Delta-G solvation = 304.922369 kcal Electronic energy + Delta-G solvation = -35427.955290 eV Core-core repulsion = 29650.344694 eV Total energy + Delta-G solvation = -5777.610596 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 380.088 amu Computer time = 38.13 seconds Orbital eigenvalues (eV) -42.78919 -42.62797 -42.49031 -42.38420 -42.06379 -41.15802 -39.03982 -38.53123 -37.28809 -34.63478 -33.77183 -31.06719 -30.39217 -30.15920 -29.54582 -26.74932 -24.35862 -23.24767 -22.11953 -22.01630 -20.66002 -19.43601 -18.98805 -17.26178 -16.68445 -16.45255 -16.30817 -15.72083 -15.00278 -14.72355 -14.65030 -14.55766 -14.22919 -13.93433 -13.64933 -13.49424 -13.44605 -13.13875 -13.10938 -12.87782 -12.76045 -12.72763 -12.62551 -12.51285 -12.37460 -12.31626 -12.28510 -12.16261 -12.07213 -12.00931 -11.92780 -11.54498 -11.34323 -10.84355 -10.76600 -10.55729 -10.47922 -10.45596 -10.30000 -10.17238 -9.75138 -9.72136 -9.66194 -9.12966 -8.47531 -8.28185 -8.05621 -6.26843 -5.77394 -3.64697 -3.14570 -2.13842 0.12478 0.41053 1.91987 1.99814 2.52324 2.90051 2.97483 3.08370 3.21571 3.39582 3.49797 3.80160 3.98876 4.17780 4.25025 4.40808 4.54224 4.97959 5.15839 5.28007 5.35361 5.38836 5.45981 5.50277 5.63696 5.75842 5.95806 6.02301 6.15690 6.23350 6.40277 6.48121 6.50178 6.66617 6.86071 6.96967 6.99069 7.06097 7.36636 7.56451 7.63521 8.62596 9.55478 Molecular weight = 380.09amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.002761 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.239863 B =10137.165526 C =11193.228051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.496 6.496 2 C 0.473 3.527 3 N -0.667 5.667 4 C 0.207 3.793 5 C -0.139 4.139 6 C 0.390 3.610 7 F -0.156 7.156 8 F -0.188 7.188 9 F -0.153 7.153 10 F -0.183 7.183 11 F -0.127 7.127 12 C -0.130 4.130 13 C -0.067 4.067 14 C 0.080 3.920 15 O -0.475 6.475 16 C 0.013 3.987 17 O -0.792 6.792 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.249 1.249 21 H -0.294 1.294 22 C -0.098 4.098 23 C -0.044 4.044 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.128 4.128 28 C -0.081 4.081 29 H 0.422 0.578 30 H 0.205 0.795 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.889 10.943 2.988 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C 0.265 3.735 3 N -0.317 5.317 4 C 0.105 3.895 5 C -0.160 4.160 6 C 0.382 3.618 7 F -0.156 7.156 8 F -0.186 7.186 9 F -0.151 7.151 10 F -0.181 7.181 11 F -0.126 7.126 12 C -0.149 4.149 13 C -0.086 4.086 14 C 0.031 3.969 15 O -0.286 6.286 16 C -0.092 4.092 17 O -0.734 6.734 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.172 1.172 21 H -0.223 1.223 22 C -0.136 4.136 23 C -0.044 4.044 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.146 4.146 28 C -0.099 4.099 29 H 0.261 0.739 30 H 0.221 0.779 31 H 0.195 0.805 32 H 0.200 0.800 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.530 10.448 3.168 15.879 hybrid contribution -1.245 0.010 -0.197 1.260 sum 10.286 10.458 2.971 14.966 Atomic orbital electron populations 1.90487 1.14984 1.86099 1.45127 1.25783 0.90627 0.85145 0.71905 1.45327 1.11927 1.02873 1.71576 1.17847 0.89614 0.88536 0.93466 1.21665 0.92894 1.00365 1.01032 1.26304 0.46136 0.94481 0.94865 1.99999 1.96369 1.19584 1.99677 1.99916 1.97155 1.36577 1.84975 1.99923 1.86619 1.36483 1.92093 1.99918 1.96052 1.23516 1.98590 1.99927 1.95341 1.20973 1.96345 1.21341 0.95086 0.98813 0.99641 1.21114 0.89270 0.99316 0.98860 1.18306 0.88013 0.90856 0.99727 1.84884 1.22430 1.94186 1.27075 1.23646 0.97013 0.89849 0.98664 1.95149 1.52805 1.35423 1.90001 0.87022 0.76910 0.80248 0.82845 1.20511 1.17240 1.22343 1.21276 0.97302 0.92517 1.02516 1.19679 0.93030 0.96433 0.95258 1.20939 0.95830 0.97884 1.00128 1.20899 0.99910 0.93474 1.00530 1.20937 0.97047 0.98129 0.99506 1.21094 0.95546 0.97680 1.00327 1.21040 0.98257 0.92104 0.98464 0.73868 0.77880 0.80463 0.80039 0.74032 0.91239 0.93381 0.86952 0.86955 0.87062 0.86822 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 625. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -12.72 13.68 -14.31 -0.20 -12.91 16 2 C 0.47 10.29 5.77 -10.99 -0.06 10.23 16 3 N -0.67 -10.30 4.84 -9.75 -0.05 -10.35 16 4 C 0.21 2.73 6.45 -83.49 -0.54 2.20 16 5 C -0.14 -2.21 7.29 -39.42 -0.29 -2.49 16 6 C 0.39 5.71 4.82 -39.58 -0.19 5.52 16 7 F -0.16 -3.64 16.66 2.25 0.04 -3.60 16 8 F -0.19 -3.61 15.30 2.25 0.03 -3.58 16 9 F -0.15 -3.27 15.30 2.25 0.03 -3.24 16 10 F -0.18 -3.43 15.30 2.25 0.03 -3.40 16 11 F -0.13 -2.85 15.31 2.25 0.03 -2.82 16 12 C -0.13 -1.23 8.61 -39.57 -0.34 -1.57 16 13 C -0.07 -0.43 9.98 -39.46 -0.39 -0.82 16 14 C 0.08 0.68 6.72 -39.07 -0.26 0.42 16 15 O -0.47 -3.05 12.92 -19.67 -0.25 -3.30 16 16 C 0.01 0.32 0.64 -27.88 -0.02 0.30 16 17 O -0.79 -24.68 16.47 -55.09 -0.91 -25.59 16 18 Si 0.90 18.97 23.16 -169.99 -3.94 15.04 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.25 -5.41 5.97 56.52 0.34 -5.08 16 21 H -0.29 -4.79 7.11 56.52 0.40 -4.39 16 22 C -0.10 -1.94 4.24 -27.89 -0.12 -2.06 16 23 C -0.04 -0.87 4.25 -104.62 -0.45 -1.32 16 24 C -0.13 -2.27 7.03 -39.58 -0.28 -2.55 16 25 C -0.13 -2.06 10.05 -39.59 -0.40 -2.45 16 26 C -0.14 -2.15 10.05 -39.59 -0.40 -2.55 16 27 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 28 C -0.08 -1.61 9.27 -39.58 -0.37 -1.97 16 29 H 0.42 5.28 7.00 -40.82 -0.29 5.00 16 30 H 0.20 4.06 5.12 -52.48 -0.27 3.80 16 31 H 0.18 1.41 7.38 -52.49 -0.39 1.03 16 32 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 33 H 0.40 0.96 9.06 45.56 0.41 1.38 16 34 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 35 H 0.05 0.74 7.19 -51.93 -0.37 0.37 16 36 H 0.11 1.71 6.99 -52.48 -0.37 1.34 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -39.44 365.45 -6.82 -46.25 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.66 Total: 3.70 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -4.50 Total: -1.71 kcal Atomic # 7 Polarization: -10.30 SS G_CDS: -0.05 Total: -10.35 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.36 Total: -41.81 kcal Atomic # 9 Polarization: -16.81 SS G_CDS: 0.18 Total: -16.63 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -3.94 Total: 15.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.44 -6.82 -46.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181378607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 351.175 kcal (2) G-P(sol) polarization free energy of solvation -39.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 311.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 304.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.13 seconds