Wall clock time and date at job start Thu Mar 26 2020 15:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21725 * 1 3 3 N 1.34771 * 120.00270 * 2 1 4 4 C 1.39998 * 119.99553 * 355.37699 * 3 2 1 5 5 C 1.38888 * 120.00283 * 214.82894 * 4 3 2 6 6 C 1.38040 * 119.99972 * 179.79147 * 5 4 3 7 7 C 1.38867 * 120.00120 * 0.48754 * 6 5 4 8 8 N 1.40082 * 119.99918 * 179.72435 * 7 6 5 9 9 C 1.34779 * 120.00234 * 35.10757 * 8 7 6 10 10 O 1.21294 * 119.99582 * 355.41554 * 9 8 7 11 11 C 1.50691 * 120.00320 * 175.40677 * 9 8 7 12 12 O 1.42902 * 109.47418 * 180.02562 * 11 9 8 13 13 Si 1.86304 * 109.47405 * 300.00605 * 11 9 8 14 14 H 1.48501 * 109.47216 * 59.99649 * 13 11 9 15 15 H 1.48497 * 109.47077 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46907 * 299.99804 * 13 11 9 17 17 C 1.50707 * 109.47155 * 60.00323 * 11 9 8 18 18 C 1.34201 * 126.49353 * 0.02706 * 17 11 9 19 19 N 1.36906 * 109.92137 * 180.02562 * 18 17 11 20 20 H 0.96996 * 125.06998 * 180.02562 * 19 18 17 21 21 C 1.37691 * 109.86536 * 359.97438 * 19 18 17 22 22 C 1.39124 * 133.47371 * 180.02562 * 21 19 18 23 23 C 1.37945 * 119.75975 * 179.97438 * 22 21 19 24 24 F 1.35101 * 119.69186 * 180.02562 * 23 22 21 25 25 C 1.39026 * 120.60801 * 359.97438 * 23 22 21 26 26 C 1.36607 * 120.50606 * 359.97438 * 25 23 22 27 27 C 1.39628 * 119.79920 * 359.74269 * 26 25 23 28 28 C 1.38870 * 120.00591 * 359.74087 * 7 6 5 29 29 C 1.38047 * 120.00121 * 0.02733 * 28 7 6 30 30 C 1.46544 * 119.99720 * 179.97438 * 2 1 3 31 31 S 1.75831 * 125.45918 * 179.69587 * 30 2 1 32 32 C 1.70606 * 91.56557 * 179.97438 * 31 30 2 33 33 C 1.33851 * 110.95515 * 0.30614 * 32 31 30 34 34 C 1.36696 * 125.46549 * 0.02562 * 30 2 1 35 35 H 0.96988 * 120.00469 * 175.10648 * 3 2 1 36 36 H 1.08008 * 119.99896 * 0.02562 * 5 4 3 37 37 H 1.08001 * 119.99711 * 180.22811 * 6 5 4 38 38 H 0.97003 * 120.00236 * 215.10992 * 8 7 6 39 39 H 1.07998 * 125.04422 * 359.97438 * 18 17 11 40 40 H 1.08006 * 120.12034 * 359.97438 * 22 21 19 41 41 H 1.07998 * 119.74835 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.10181 * 180.02562 * 26 25 23 43 43 H 1.07996 * 119.99886 * 179.97438 * 28 7 6 44 44 H 1.08002 * 119.99909 * 179.97438 * 29 28 7 45 45 H 1.08003 * 124.52521 * 180.02562 * 32 31 30 46 46 H 1.08007 * 122.44452 * 179.74441 * 33 32 31 47 47 H 1.08000 * 123.35012 * 359.93705 * 34 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2173 0.0000 0.0000 3 7 1.8912 1.1671 0.0000 4 6 1.1946 2.3775 -0.0977 5 6 1.7506 3.4448 -0.7911 6 6 1.0617 4.6369 -0.8911 7 6 -0.1827 4.7723 -0.2898 8 7 -0.8791 5.9839 -0.3864 9 6 -0.7957 6.7214 -1.5115 10 8 -0.0533 6.3788 -2.4074 11 6 -1.6248 7.9713 -1.6564 12 8 -1.3631 8.5721 -2.9263 13 14 -3.4321 7.5350 -1.5371 14 1 -3.7046 6.9104 -0.2177 15 1 -4.2491 8.7668 -1.6793 16 1 -3.7832 6.5800 -2.6188 17 6 -1.2686 8.9405 -0.5587 18 6 -0.3598 8.7501 0.4103 19 7 -0.3107 9.8485 1.2261 20 1 0.2711 9.9451 1.9962 21 6 -1.2094 10.7960 0.7898 22 6 -1.5573 12.0650 1.2415 23 6 -2.5214 12.7897 0.5719 24 9 -2.8578 14.0221 1.0115 25 6 -3.1492 12.2639 -0.5515 26 6 -2.8207 11.0201 -1.0111 27 6 -1.8433 10.2724 -0.3515 28 6 -0.7366 3.7068 0.4076 29 6 -0.0501 2.5131 0.5036 30 6 1.9499 -1.2691 0.0006 31 16 3.7002 -1.4365 -0.0070 32 6 3.5843 -3.1386 -0.0004 33 6 2.3047 -3.5313 0.0003 34 6 1.3822 -2.5127 0.0006 35 1 2.8584 1.1687 0.0716 36 1 2.7202 3.3408 -1.2553 37 1 1.4925 5.4656 -1.4334 38 1 -1.4213 6.2923 0.3565 39 1 0.2429 7.8619 0.5294 40 1 -1.0743 12.4813 2.1132 41 1 -3.9018 12.8435 -1.0653 42 1 -3.3123 10.6182 -1.8848 43 1 -1.7042 3.8124 0.8755 44 1 -0.4808 1.6846 1.0463 45 1 4.4305 -3.8098 -0.0015 46 1 2.0181 -4.5726 0.0001 47 1 0.3150 -2.6781 0.0012 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442971478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 15:39:07 Heat of formation + Delta-G solvation = -31.135668 kcal Electronic energy + Delta-G solvation = -38022.966192 eV Core-core repulsion = 32757.326470 eV Total energy + Delta-G solvation = -5265.639722 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 438.088 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.51824 -40.77231 -40.60099 -39.44809 -38.17590 -37.36222 -36.11337 -35.05863 -33.37401 -32.63957 -30.72523 -30.49758 -30.22432 -28.81380 -28.38684 -27.61556 -25.49076 -24.20078 -23.03792 -22.63296 -22.33159 -21.36537 -21.15081 -20.09450 -19.79335 -18.98571 -18.45356 -17.66312 -17.45163 -16.97742 -16.57677 -16.23729 -15.84726 -15.73551 -15.67074 -15.28027 -15.22561 -14.76295 -14.40877 -14.31600 -13.98447 -13.91449 -13.69897 -13.61582 -13.44260 -13.38743 -13.22713 -13.09212 -12.91346 -12.85488 -12.71693 -12.57156 -12.38837 -12.26052 -11.47334 -11.46735 -11.18107 -11.06312 -10.92072 -10.74912 -10.67426 -10.43253 -10.24786 -10.09897 -10.01718 -9.37218 -9.18170 -9.06127 -8.86811 -8.77811 -8.56195 -7.69118 -7.38225 -6.97648 -6.04187 -5.53758 0.04693 0.99993 1.39785 1.46398 1.48891 1.68700 1.96078 2.02224 2.78128 2.91190 3.15932 3.29628 3.32113 3.42414 3.56437 3.73225 3.93369 4.11040 4.30284 4.40700 4.53605 4.55452 4.79412 4.84829 5.03184 5.08699 5.14801 5.27461 5.40744 5.48038 5.49698 5.59276 5.60970 5.68805 5.71098 5.77483 5.85956 5.87141 6.03307 6.05356 6.20110 6.36126 6.44601 6.48253 6.54479 6.64242 6.69775 6.75237 6.89362 6.97650 7.02007 7.19492 7.28836 7.45118 7.50712 7.66849 7.86114 8.05445 8.24262 9.19657 9.86261 Molecular weight = 438.09amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.001261 C = 0.001234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.051612 B =22204.784895 C =22688.454496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.509 6.509 2 C 0.588 3.412 3 N -0.663 5.663 4 C 0.101 3.899 5 C -0.119 4.119 6 C -0.110 4.110 7 C 0.156 3.844 8 N -0.694 5.694 9 C 0.484 3.516 10 O -0.509 6.509 11 C 0.061 3.939 12 O -0.799 6.799 13 Si 0.922 3.078 14 H -0.294 1.294 15 H -0.261 1.261 16 H -0.275 1.275 17 C -0.111 4.111 18 C -0.003 4.003 19 N -0.596 5.596 20 H 0.408 0.592 21 C 0.118 3.882 22 C -0.179 4.179 23 C 0.110 3.890 24 F -0.148 7.148 25 C -0.198 4.198 26 C -0.017 4.017 27 C -0.098 4.098 28 C -0.143 4.143 29 C -0.096 4.096 30 C -0.266 4.266 31 S 0.201 5.799 32 C -0.228 4.228 33 C -0.150 4.150 34 C -0.053 4.053 35 H 0.404 0.596 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.405 0.595 39 H 0.164 0.836 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.137 0.863 45 H 0.170 0.830 46 H 0.147 0.853 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.097 -15.548 12.523 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.386 6.386 2 C 0.375 3.625 3 N -0.308 5.308 4 C 0.008 3.992 5 C -0.140 4.140 6 C -0.131 4.131 7 C 0.060 3.940 8 N -0.345 5.345 9 C 0.275 3.725 10 O -0.381 6.381 11 C -0.044 4.044 12 O -0.741 6.741 13 Si 0.748 3.252 14 H -0.222 1.222 15 H -0.186 1.186 16 H -0.200 1.200 17 C -0.118 4.118 18 C -0.125 4.125 19 N -0.200 5.200 20 H 0.244 0.756 21 C 0.009 3.991 22 C -0.201 4.201 23 C 0.089 3.911 24 F -0.127 7.127 25 C -0.218 4.218 26 C -0.035 4.035 27 C -0.103 4.103 28 C -0.164 4.164 29 C -0.117 4.117 30 C -0.387 4.387 31 S 0.468 5.532 32 C -0.366 4.366 33 C -0.181 4.181 34 C -0.086 4.086 35 H 0.240 0.760 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.241 0.759 39 H 0.181 0.819 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.188 0.812 46 H 0.165 0.835 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.250 -14.779 11.601 20.941 hybrid contribution -0.222 -0.904 0.849 1.260 sum 9.028 -15.683 12.450 21.965 Atomic orbital electron populations 1.90856 1.12599 1.86634 1.48476 1.16985 0.86954 0.82063 0.76500 1.43194 1.10144 1.04344 1.73081 1.17555 0.94877 0.85263 1.01509 1.20749 1.00918 0.92944 0.99396 1.21197 0.92982 0.98477 1.00415 1.18140 0.91218 0.87177 0.97465 1.44855 1.49873 1.20170 1.19604 1.24585 0.82448 0.86323 0.79176 1.90454 1.37452 1.70009 1.40204 1.21939 0.99561 0.87661 0.95216 1.95133 1.86631 1.73612 1.18769 0.86691 0.83088 0.78662 0.76717 1.22238 1.18597 1.20046 1.21959 0.97713 0.95524 0.96613 1.21688 1.04051 0.92097 0.94665 1.41610 1.35935 1.14374 1.28101 0.75574 1.17808 0.94171 0.90985 0.96178 1.19556 1.03026 0.93765 1.03758 1.17110 0.97716 0.80559 0.95671 1.91432 1.91607 1.40368 1.89277 1.20497 1.04926 0.97876 0.98512 1.20425 0.93717 0.91822 0.97548 1.19078 0.99582 0.95725 0.95919 1.20874 1.00218 0.91671 1.03682 1.20940 0.94155 0.97370 0.99215 1.24593 0.97403 0.97623 1.19038 1.83029 1.01888 1.00773 1.67532 1.25361 1.02079 1.00417 1.08725 1.20080 0.91570 1.01228 1.05203 1.20851 1.01928 0.89695 0.96114 0.76049 0.85832 0.83613 0.75895 0.81924 0.85779 0.85352 0.84491 0.85494 0.84525 0.81247 0.83526 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -8.07 14.27 5.17 0.07 -8.00 16 2 C 0.59 7.35 7.62 -12.92 -0.10 7.26 16 3 N -0.66 -7.53 5.33 -11.04 -0.06 -7.59 16 4 C 0.10 1.43 6.30 -83.65 -0.53 0.90 16 5 C -0.12 -1.73 9.96 -39.41 -0.39 -2.13 16 6 C -0.11 -1.94 8.69 -39.42 -0.34 -2.28 16 7 C 0.16 2.79 6.30 -83.62 -0.53 2.27 16 8 N -0.69 -13.46 3.65 -9.83 -0.04 -13.50 16 9 C 0.48 12.02 5.11 -10.99 -0.06 11.96 16 10 O -0.51 -14.41 13.94 -14.36 -0.20 -14.61 16 11 C 0.06 1.61 0.78 -29.04 -0.02 1.59 16 12 O -0.80 -26.94 17.19 -55.14 -0.95 -27.89 16 13 Si 0.92 21.87 25.10 -169.99 -4.27 17.60 16 14 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.26 -5.99 5.99 56.52 0.34 -5.65 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 C -0.11 -2.56 4.50 -102.70 -0.46 -3.02 16 18 C 0.00 -0.05 10.25 -16.71 -0.17 -0.22 16 19 N -0.60 -9.52 6.07 -10.64 -0.06 -9.58 16 20 H 0.41 4.75 8.96 -40.82 -0.37 4.39 16 21 C 0.12 2.16 7.27 -83.99 -0.61 1.55 16 22 C -0.18 -2.92 10.05 -39.36 -0.40 -3.31 16 23 C 0.11 1.86 7.28 -39.40 -0.29 1.57 16 24 F -0.15 -2.37 17.25 2.25 0.04 -2.33 16 25 C -0.20 -3.50 9.95 -39.88 -0.40 -3.90 16 26 C -0.02 -0.35 9.28 -39.65 -0.37 -0.72 16 27 C -0.10 -2.13 5.86 -105.12 -0.62 -2.75 16 28 C -0.14 -2.23 9.96 -39.42 -0.39 -2.62 16 29 C -0.10 -1.45 8.69 -39.41 -0.34 -1.79 16 30 C -0.27 -2.56 6.45 -36.79 -0.24 -2.80 16 31 S 0.20 1.27 22.16 -107.50 -2.38 -1.11 16 32 C -0.23 -1.28 10.92 29.19 0.32 -0.96 16 33 C -0.15 -0.96 10.15 -41.42 -0.42 -1.38 16 34 C -0.05 -0.45 10.01 -40.44 -0.40 -0.86 16 35 H 0.40 3.32 7.95 -40.82 -0.32 2.99 16 36 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.15 2.89 6.22 -52.49 -0.33 2.57 16 38 H 0.40 6.81 7.50 -40.82 -0.31 6.50 16 39 H 0.16 2.76 6.62 -52.49 -0.35 2.41 16 40 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.14 3.00 6.73 -52.49 -0.35 2.64 16 43 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.14 2.04 6.21 -52.49 -0.33 1.71 16 45 H 0.17 0.52 8.06 -52.48 -0.42 0.10 16 46 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 417.17 15.07 6.29 6.29 Total: -1.00 -38.16 417.17 -12.48 -50.64 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.17 Total: 11.73 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -6.75 Total: -1.64 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: -0.16 Total: -30.68 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.07 Total: -50.50 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.27 Total: 17.60 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.38 Total: -1.11 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -38.16 -12.48 -50.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442971478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.504 kcal (2) G-P(sol) polarization free energy of solvation -38.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds