Wall clock time and date at job start Thu Mar 26 2020 15:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21725 * 1 3 3 N 1.34771 * 120.00270 * 2 1 4 4 C 1.39998 * 119.99553 * 355.37699 * 3 2 1 5 5 C 1.38888 * 120.00283 * 214.82894 * 4 3 2 6 6 C 1.38040 * 119.99972 * 179.79147 * 5 4 3 7 7 C 1.38867 * 120.00120 * 0.48754 * 6 5 4 8 8 N 1.40082 * 119.99918 * 179.72435 * 7 6 5 9 9 C 1.34779 * 120.00234 * 35.10757 * 8 7 6 10 10 O 1.21294 * 119.99582 * 355.41554 * 9 8 7 11 11 C 1.50691 * 120.00320 * 175.40677 * 9 8 7 12 12 O 1.42902 * 109.47418 * 180.02562 * 11 9 8 13 13 Si 1.86304 * 109.47405 * 300.00605 * 11 9 8 14 14 H 1.48501 * 109.47216 * 59.99649 * 13 11 9 15 15 H 1.48497 * 109.47077 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46907 * 299.99804 * 13 11 9 17 17 C 1.50707 * 109.47155 * 60.00323 * 11 9 8 18 18 C 1.34201 * 126.49353 * 0.02706 * 17 11 9 19 19 N 1.36906 * 109.92137 * 180.02562 * 18 17 11 20 20 H 0.96996 * 125.06998 * 180.02562 * 19 18 17 21 21 C 1.37691 * 109.86536 * 359.97438 * 19 18 17 22 22 C 1.39124 * 133.47371 * 180.02562 * 21 19 18 23 23 C 1.37945 * 119.75975 * 179.97438 * 22 21 19 24 24 F 1.35101 * 119.69186 * 180.02562 * 23 22 21 25 25 C 1.39026 * 120.60801 * 359.97438 * 23 22 21 26 26 C 1.36607 * 120.50606 * 359.97438 * 25 23 22 27 27 C 1.39628 * 119.79920 * 359.74269 * 26 25 23 28 28 C 1.38870 * 120.00591 * 359.74087 * 7 6 5 29 29 C 1.38047 * 120.00121 * 0.02733 * 28 7 6 30 30 C 1.46544 * 119.99720 * 179.97438 * 2 1 3 31 31 S 1.75831 * 125.45918 * 179.69587 * 30 2 1 32 32 C 1.70606 * 91.56557 * 179.97438 * 31 30 2 33 33 C 1.33851 * 110.95515 * 0.30614 * 32 31 30 34 34 C 1.36696 * 125.46549 * 0.02562 * 30 2 1 35 35 H 0.96988 * 120.00469 * 175.10648 * 3 2 1 36 36 H 1.08008 * 119.99896 * 0.02562 * 5 4 3 37 37 H 1.08001 * 119.99711 * 180.22811 * 6 5 4 38 38 H 0.97003 * 120.00236 * 215.10992 * 8 7 6 39 39 H 1.07998 * 125.04422 * 359.97438 * 18 17 11 40 40 H 1.08006 * 120.12034 * 359.97438 * 22 21 19 41 41 H 1.07998 * 119.74835 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.10181 * 180.02562 * 26 25 23 43 43 H 1.07996 * 119.99886 * 179.97438 * 28 7 6 44 44 H 1.08002 * 119.99909 * 179.97438 * 29 28 7 45 45 H 1.08003 * 124.52521 * 180.02562 * 32 31 30 46 46 H 1.08007 * 122.44452 * 179.74441 * 33 32 31 47 47 H 1.08000 * 123.35012 * 359.93705 * 34 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2173 0.0000 0.0000 3 7 1.8912 1.1671 0.0000 4 6 1.1946 2.3775 -0.0977 5 6 1.7506 3.4448 -0.7911 6 6 1.0617 4.6369 -0.8911 7 6 -0.1827 4.7723 -0.2898 8 7 -0.8791 5.9839 -0.3864 9 6 -0.7957 6.7214 -1.5115 10 8 -0.0533 6.3788 -2.4074 11 6 -1.6248 7.9713 -1.6564 12 8 -1.3631 8.5721 -2.9263 13 14 -3.4321 7.5350 -1.5371 14 1 -3.7046 6.9104 -0.2177 15 1 -4.2491 8.7668 -1.6793 16 1 -3.7832 6.5800 -2.6188 17 6 -1.2686 8.9405 -0.5587 18 6 -0.3598 8.7501 0.4103 19 7 -0.3107 9.8485 1.2261 20 1 0.2711 9.9451 1.9962 21 6 -1.2094 10.7960 0.7898 22 6 -1.5573 12.0650 1.2415 23 6 -2.5214 12.7897 0.5719 24 9 -2.8578 14.0221 1.0115 25 6 -3.1492 12.2639 -0.5515 26 6 -2.8207 11.0201 -1.0111 27 6 -1.8433 10.2724 -0.3515 28 6 -0.7366 3.7068 0.4076 29 6 -0.0501 2.5131 0.5036 30 6 1.9499 -1.2691 0.0006 31 16 3.7002 -1.4365 -0.0070 32 6 3.5843 -3.1386 -0.0004 33 6 2.3047 -3.5313 0.0003 34 6 1.3822 -2.5127 0.0006 35 1 2.8584 1.1687 0.0716 36 1 2.7202 3.3408 -1.2553 37 1 1.4925 5.4656 -1.4334 38 1 -1.4213 6.2923 0.3565 39 1 0.2429 7.8619 0.5294 40 1 -1.0743 12.4813 2.1132 41 1 -3.9018 12.8435 -1.0653 42 1 -3.3123 10.6182 -1.8848 43 1 -1.7042 3.8124 0.8755 44 1 -0.4808 1.6846 1.0463 45 1 4.4305 -3.8098 -0.0015 46 1 2.0181 -4.5726 0.0001 47 1 0.3150 -2.6781 0.0012 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442971478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 15:39:06 Heat of formation + Delta-G solvation = -57.713220 kcal Electronic energy + Delta-G solvation = -38024.118681 eV Core-core repulsion = 32757.326470 eV Total energy + Delta-G solvation = -5266.792212 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 438.088 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.81822 -42.24649 -41.73360 -40.90304 -39.25510 -38.33356 -37.55395 -36.35844 -34.94913 -34.27282 -32.00010 -31.89169 -31.28207 -30.33364 -29.80257 -29.00238 -26.47704 -25.64298 -24.29295 -24.07050 -23.44949 -22.76893 -22.37102 -21.61525 -20.53483 -20.15329 -19.61804 -19.10324 -18.56381 -18.38465 -17.98721 -17.41819 -17.11823 -16.88135 -16.56288 -16.55784 -16.43998 -16.13345 -15.90934 -15.62332 -15.48024 -15.16733 -15.09530 -14.92007 -14.79701 -14.63621 -14.42396 -14.30701 -14.05772 -13.88806 -13.79857 -13.73133 -13.67968 -13.27806 -13.21410 -12.74419 -12.57449 -12.40919 -12.33758 -12.17640 -12.01217 -11.96262 -11.84210 -11.79623 -11.27539 -10.79395 -10.42250 -10.41129 -9.93806 -9.92363 -9.55039 -9.13151 -8.75517 -8.56286 -8.23769 -7.74805 -0.58948 0.04316 0.21873 0.41041 0.45416 0.51793 0.89512 1.26292 1.36687 1.38488 1.43594 1.73890 1.84519 1.93545 2.06527 2.16083 2.37335 2.59210 2.84312 2.86520 3.42847 3.61699 3.78591 3.90081 3.99496 4.02607 4.11334 4.13431 4.31192 4.31881 4.34639 4.37402 4.44914 4.50890 4.54124 4.59977 4.62980 4.82501 4.97956 5.00219 5.05424 5.09252 5.16875 5.18755 5.25777 5.28810 5.34881 5.40323 5.45435 5.53242 5.63275 5.79702 5.87248 6.07941 6.16954 6.25250 6.59620 6.80912 6.91907 7.37112 7.88118 Molecular weight = 438.09amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.001261 C = 0.001234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.051612 B =22204.784895 C =22688.454496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C 0.587 3.413 3 N -0.654 5.654 4 C 0.114 3.886 5 C -0.114 4.114 6 C -0.124 4.124 7 C 0.127 3.873 8 N -0.675 5.675 9 C 0.488 3.512 10 O -0.560 6.560 11 C 0.025 3.975 12 O -0.887 6.887 13 Si 0.942 3.058 14 H -0.232 1.232 15 H -0.260 1.260 16 H -0.308 1.308 17 C -0.164 4.164 18 C 0.030 3.970 19 N -0.571 5.571 20 H 0.434 0.566 21 C 0.117 3.883 22 C -0.157 4.157 23 C 0.108 3.892 24 F -0.138 7.138 25 C -0.185 4.185 26 C -0.051 4.051 27 C -0.132 4.132 28 C -0.132 4.132 29 C -0.102 4.102 30 C -0.307 4.307 31 S 0.242 5.758 32 C -0.214 4.214 33 C -0.162 4.162 34 C -0.054 4.054 35 H 0.421 0.579 36 H 0.152 0.848 37 H 0.118 0.882 38 H 0.418 0.582 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.150 0.850 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.202 0.798 46 H 0.169 0.831 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -17.091 16.599 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.431 6.431 2 C 0.377 3.623 3 N -0.299 5.299 4 C 0.019 3.981 5 C -0.134 4.134 6 C -0.145 4.145 7 C 0.032 3.968 8 N -0.326 5.326 9 C 0.279 3.721 10 O -0.437 6.437 11 C -0.077 4.077 12 O -0.833 6.833 13 Si 0.767 3.233 14 H -0.157 1.157 15 H -0.185 1.185 16 H -0.235 1.235 17 C -0.171 4.171 18 C -0.095 4.095 19 N -0.177 5.177 20 H 0.275 0.725 21 C 0.008 3.992 22 C -0.178 4.178 23 C 0.088 3.912 24 F -0.117 7.117 25 C -0.205 4.205 26 C -0.070 4.070 27 C -0.137 4.137 28 C -0.152 4.152 29 C -0.123 4.123 30 C -0.427 4.427 31 S 0.509 5.491 32 C -0.352 4.352 33 C -0.192 4.192 34 C -0.089 4.089 35 H 0.259 0.741 36 H 0.169 0.831 37 H 0.136 0.864 38 H 0.256 0.744 39 H 0.197 0.803 40 H 0.183 0.817 41 H 0.167 0.833 42 H 0.126 0.874 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.219 0.781 46 H 0.186 0.814 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.201 -16.335 15.817 25.347 hybrid contribution -0.670 -0.568 -0.344 0.943 sum 10.531 -16.903 15.472 25.219 Atomic orbital electron populations 1.90823 1.14466 1.87317 1.50479 1.17414 0.86682 0.82982 0.75259 1.43119 1.10942 1.03245 1.72612 1.17643 0.94576 0.85966 0.99870 1.20890 1.01786 0.91754 0.98977 1.21089 0.93664 0.98982 1.00771 1.18244 0.91754 0.87075 0.99727 1.44257 1.49741 1.20327 1.18275 1.24058 0.81699 0.86425 0.79891 1.90418 1.39567 1.71384 1.42289 1.22432 1.02303 0.88928 0.94010 1.95023 1.89004 1.76013 1.23275 0.86320 0.80422 0.78191 0.78398 1.15697 1.18494 1.23523 1.21513 1.01323 0.96418 0.97853 1.21730 1.01524 0.92848 0.93376 1.41433 1.35386 1.12757 1.28113 0.72495 1.17871 0.94218 0.91866 0.95292 1.19881 1.01644 0.92258 1.04023 1.17084 0.97796 0.80972 0.95378 1.91464 1.91527 1.39641 1.89040 1.20660 1.04677 0.96599 0.98563 1.20303 0.95272 0.93599 0.97830 1.19339 1.00763 0.95819 0.97811 1.21016 1.00855 0.90853 1.02515 1.21089 0.94592 0.97156 0.99438 1.24412 0.99695 0.96356 1.22219 1.82870 0.98560 1.01263 1.66392 1.25839 1.02790 1.00536 1.06013 1.20253 0.91440 1.01805 1.05665 1.21038 1.02235 0.90192 0.95407 0.74084 0.83056 0.86400 0.74378 0.80305 0.81677 0.83273 0.87416 0.83367 0.84119 0.78144 0.81355 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -17.52 14.27 -4.43 -0.06 -17.58 16 2 C 0.59 14.24 7.62 86.41 0.66 14.90 16 3 N -0.65 -13.89 5.33 -307.06 -1.64 -15.53 16 4 C 0.11 3.09 6.30 38.15 0.24 3.33 16 5 C -0.11 -3.23 9.96 22.38 0.22 -3.01 16 6 C -0.12 -4.50 8.69 22.37 0.19 -4.30 16 7 C 0.13 4.57 6.30 38.12 0.24 4.81 16 8 N -0.68 -26.58 3.65 -303.38 -1.11 -27.69 16 9 C 0.49 25.52 5.11 87.65 0.45 25.97 16 10 O -0.56 -34.02 13.94 15.96 0.22 -33.79 16 11 C 0.02 1.39 0.78 29.10 0.02 1.41 16 12 O -0.89 -64.91 17.19 -129.94 -2.23 -67.14 16 13 Si 0.94 46.24 25.10 68.60 1.72 47.96 16 14 H -0.23 -8.92 7.11 99.48 0.71 -8.21 16 15 H -0.26 -12.57 5.99 99.48 0.60 -11.98 16 16 H -0.31 -16.55 7.11 99.48 0.71 -15.84 16 17 C -0.16 -7.76 4.50 -18.62 -0.08 -7.84 16 18 C 0.03 1.11 10.25 82.98 0.85 1.96 16 19 N -0.57 -16.73 6.07 -187.59 -1.14 -17.87 16 20 H 0.43 8.34 8.96 -92.71 -0.83 7.51 16 21 C 0.12 4.05 7.27 39.03 0.28 4.33 16 22 C -0.16 -4.54 10.05 22.41 0.23 -4.31 16 23 C 0.11 3.38 7.28 22.39 0.16 3.54 16 24 F -0.14 -3.95 17.25 44.97 0.78 -3.18 16 25 C -0.19 -6.45 9.95 22.08 0.22 -6.23 16 26 C -0.05 -2.22 9.28 22.22 0.21 -2.02 16 27 C -0.13 -5.85 5.86 -20.19 -0.12 -5.97 16 28 C -0.13 -3.98 9.96 22.38 0.22 -3.76 16 29 C -0.10 -2.98 8.69 22.38 0.19 -2.79 16 30 C -0.31 -5.48 6.45 24.08 0.16 -5.32 16 31 S 0.24 2.37 22.16 -56.49 -1.25 1.12 16 32 C -0.21 -1.60 10.92 66.82 0.73 -0.87 16 33 C -0.16 -1.63 10.15 21.08 0.21 -1.42 16 34 C -0.05 -0.87 10.01 21.72 0.22 -0.65 16 35 H 0.42 6.00 7.95 -92.72 -0.74 5.26 16 36 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.12 4.99 6.22 -2.91 -0.02 4.97 16 38 H 0.42 13.75 7.50 -92.71 -0.70 13.05 16 39 H 0.18 5.93 6.62 -2.91 -0.02 5.91 16 40 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 42 H 0.11 5.17 6.73 -2.91 -0.02 5.15 16 43 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.14 4.08 6.21 -2.91 -0.02 4.06 16 45 H 0.20 0.24 8.06 -2.91 -0.02 0.21 16 46 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 47 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -93.97 417.17 0.30 -93.67 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.49 Total: 28.28 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.51 Total: 11.76 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -3.88 Total: -61.09 kcal Atomic # 8 Polarization: -116.44 SS G_CDS: -2.07 Total: -118.52 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.72 Total: 47.96 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.25 Total: 1.12 kcal Total: -93.97 0.30 -93.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442971478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.955 kcal (2) G-P(sol) polarization free energy of solvation -93.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds