Wall clock time and date at job start Thu Mar 26 2020 20:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 C 1.52996 * 109.47659 * 239.99738 * 2 1 3 5 5 C 1.53005 * 109.47134 * 119.99282 * 2 1 3 6 6 O 1.42904 * 109.46691 * 54.93062 * 5 2 1 7 7 Si 1.86291 * 109.47373 * 294.92955 * 5 2 1 8 8 H 1.48499 * 109.47392 * 59.99726 * 7 5 2 9 9 H 1.48504 * 109.47285 * 179.97438 * 7 5 2 10 10 H 1.48504 * 109.47258 * 299.99692 * 7 5 2 11 11 C 1.50699 * 109.47052 * 174.92512 * 5 2 1 12 12 O 1.21289 * 120.00239 * 248.37230 * 11 5 2 13 13 N 1.34781 * 119.99664 * 68.37572 * 11 5 2 14 14 C 1.39957 * 119.99637 * 175.64711 * 13 11 5 15 15 C 1.38999 * 120.08608 * 215.13240 * 14 13 11 16 16 C 1.38222 * 120.48766 * 180.09231 * 15 14 13 17 17 C 1.38136 * 120.14698 * 359.92136 * 16 15 14 18 18 C 1.39503 * 119.45249 * 359.95329 * 17 16 15 19 19 C 1.38767 * 120.64991 * 359.88884 * 18 17 16 20 Xx 1.57608 * 118.34660 * 180.29219 * 18 17 16 21 20 O 1.41993 * 122.03638 * 171.37103 * 20 18 17 22 21 O 1.43356 * 115.93471 * 351.35092 * 20 18 17 23 22 C 1.43323 * 111.34788 * 41.24286 * 22 20 18 24 23 C 1.50453 * 120.25790 * 179.76090 * 17 16 15 25 24 H 1.09004 * 109.47090 * 299.99862 * 1 2 3 26 25 H 1.08991 * 109.47198 * 60.00719 * 1 2 3 27 26 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 28 27 H 1.09004 * 109.47621 * 187.21429 * 3 2 1 29 28 H 1.09007 * 109.47020 * 307.21308 * 3 2 1 30 29 H 1.09002 * 109.47357 * 67.20953 * 3 2 1 31 30 H 1.09006 * 109.46667 * 300.00041 * 4 2 1 32 31 H 1.09001 * 109.47136 * 59.99486 * 4 2 1 33 32 H 1.08992 * 109.47268 * 179.97438 * 4 2 1 34 33 H 0.97000 * 120.00140 * 355.65021 * 13 11 5 35 34 H 1.07998 * 119.75899 * 0.06995 * 15 14 13 36 35 H 1.07999 * 119.92737 * 179.90160 * 16 15 14 37 36 H 1.07995 * 120.28022 * 180.11897 * 19 18 17 38 37 H 0.96695 * 114.00735 * 179.97438 * 21 20 18 39 38 H 1.08993 * 109.32794 * 174.09083 * 23 22 20 40 39 H 1.09000 * 109.32067 * 54.61393 * 23 22 20 41 40 H 1.08996 * 109.13923 * 277.44728 * 24 17 16 42 41 H 1.09004 * 109.13609 * 36.63606 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 8 1.4689 -2.0296 1.3105 7 14 1.5491 0.2422 2.7664 8 1 0.0693 0.3504 2.8267 9 1 2.0436 -0.4580 3.9790 10 1 2.1426 1.6020 2.7029 11 6 3.5418 -0.8309 1.1881 12 8 4.0652 -1.9154 1.0431 13 7 4.3032 0.2761 1.2946 14 6 5.6979 0.1653 1.3294 15 6 6.4468 1.0362 2.1122 16 6 7.8248 0.9355 2.1512 17 6 8.4706 -0.0359 1.4113 18 6 7.7206 -0.9126 0.6270 19 6 6.3368 -0.8182 0.5866 20 8 7.7976 -3.0567 -0.8801 21 8 9.9125 -1.9027 -0.2277 22 6 10.4318 -1.5463 1.0597 23 6 9.9708 -0.1444 1.4477 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1224 1.4453 -0.1291 28 1 1.5751 1.9922 -0.8185 29 1 1.7858 1.9178 0.9474 30 1 1.6768 -1.7490 -1.2490 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7208 -1.2493 33 1 3.8846 1.1495 1.3472 34 1 5.9484 1.7975 2.6939 35 1 8.3979 1.6179 2.7613 36 1 5.7619 -1.5012 -0.0211 37 1 8.3790 -3.6686 -1.3518 38 1 11.5210 -1.5724 1.0292 39 1 10.0770 -2.2611 1.8022 40 1 10.3983 0.5776 0.7520 41 1 10.3209 0.0798 2.4553 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE ALL CONVERGERS ARE NOW FORCED ON SHIFT=1000, PULAY ON, CAMP-KING ON AND ITERATION COUNTER RESET CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863867531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 20:11:59 Heat of formation + Delta-G solvation = 66.732732 kcal Electronic energy + Delta-G solvation = -24685.435379 eV Core-core repulsion = 21040.654192 eV Total energy + Delta-G solvation = -3644.781187 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.142 amu Computer time = 47.17 seconds Orbital eigenvalues (eV) -40.53529 -38.75545 -36.64952 -35.29812 -33.67707 -31.43461 -30.93323 -30.32755 -30.20384 -27.81300 -26.93276 -26.74126 -25.15950 -22.62884 -22.47493 -20.54595 -20.08833 -18.70909 -16.96308 -16.49413 -15.79387 -15.42471 -14.94191 -14.52557 -14.39316 -14.06833 -13.90588 -13.49329 -13.33902 -13.28898 -13.13113 -12.71914 -12.70493 -12.36807 -12.18061 -11.97874 -11.79504 -11.44665 -11.37182 -11.35467 -11.24057 -11.04111 -10.65016 -10.45722 -10.31223 -10.11910 -10.01733 -9.42477 -9.00750 -8.63822 -8.31951 -8.00159 -7.68326 -7.54926 -5.87552 -4.86476 -0.79443 1.13994 1.28116 2.44684 2.54825 2.68599 3.06708 3.28507 3.46610 3.73375 4.69514 4.82514 5.01167 5.05932 5.15375 5.17623 5.27546 5.28780 5.47312 5.57257 5.68072 5.76988 5.85452 5.90502 5.92993 5.98286 6.06840 6.09678 6.14151 6.25816 6.31740 6.34306 6.36227 6.41677 6.54469 6.54876 6.67294 6.79081 6.85877 6.93371 7.49699 7.63931 8.04041 8.69522 8.89945 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.004873 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.544223 B = 5744.343654 C = 6288.088076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.175 4.175 4 C -0.126 4.126 5 C -0.036 4.036 6 O -0.609 6.609 7 Si 0.963 3.037 8 H -0.249 1.249 9 H -0.264 1.264 10 H -0.262 1.262 11 C 0.492 3.508 12 O -0.482 6.482 13 N -0.683 5.683 14 C 0.180 3.820 15 C -0.159 4.159 16 C -0.071 4.071 17 C -0.115 4.115 18 C 0.250 3.750 19 C -0.123 4.123 20 O -0.706 6.706 21 O -0.528 6.528 22 C 0.063 3.937 23 C -0.094 4.094 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.412 0.588 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.311 0.689 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.078 0.922 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 14.954 4.898 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.232 4.232 4 C -0.184 4.184 5 C -0.134 4.134 6 O -0.553 6.553 7 Si 0.781 3.219 8 H -0.172 1.172 9 H -0.189 1.189 10 H -0.190 1.190 11 C 0.281 3.719 12 O -0.353 6.353 13 N -0.338 5.338 14 C 0.084 3.916 15 C -0.180 4.180 16 C -0.090 4.090 17 C -0.117 4.117 18 C 0.232 3.768 19 C -0.143 4.143 20 O -0.532 6.532 21 O -0.464 6.464 22 C -0.020 4.020 23 C -0.131 4.131 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.192 0.808 37 H 0.143 0.857 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.097 0.903 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.532 14.597 5.582 15.831 hybrid contribution 0.741 -0.567 -0.761 1.204 sum -1.791 14.030 4.821 14.943 Atomic orbital electron populations 1.21781 0.93913 1.03140 1.00361 1.20983 0.96776 0.93651 0.96276 1.22434 1.01602 0.96804 1.02375 1.21730 1.00288 1.01305 0.95041 1.25051 0.87804 1.00997 0.99565 1.95026 1.71706 1.16843 1.71693 0.86379 0.81768 0.74762 0.79018 1.17245 1.18880 1.18966 1.23168 0.91288 0.83221 0.74271 1.90667 1.72940 1.27393 1.44269 1.44691 1.02808 1.11658 1.74670 1.17515 0.84233 0.94992 0.94846 1.21104 0.93994 1.02353 1.00522 1.20577 0.93301 0.96679 0.98431 1.20166 0.98919 0.94882 0.97694 1.29809 0.85249 0.78042 0.83673 1.21319 0.91490 1.00354 1.01093 1.93610 1.33552 1.51129 1.74872 1.95097 1.41840 1.85888 1.23605 1.21776 0.95607 0.91523 0.93140 1.21468 0.88702 1.01293 1.01655 0.93249 0.93176 0.90909 0.91980 0.91555 0.92149 0.91384 0.93414 0.93464 0.74685 0.83975 0.83281 0.80833 0.85732 0.92168 0.95839 0.90338 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 20 The total number of SCF iterations 1136. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 7.90 37.16 0.29 -1.80 16 2 C -0.08 -1.29 0.38 -154.51 -0.06 -1.35 16 3 C -0.18 -2.23 6.90 37.16 0.26 -1.97 16 4 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 5 C -0.04 -0.74 0.31 -27.88 -0.01 -0.75 16 6 O -0.61 -16.03 15.87 -55.00 -0.87 -16.91 16 7 Si 0.96 16.26 22.26 -169.99 -3.78 12.48 16 8 H -0.25 -4.02 6.41 56.52 0.36 -3.66 16 9 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 10 H -0.26 -3.28 6.01 56.52 0.34 -2.94 16 11 C 0.49 10.47 4.35 -10.98 -0.05 10.43 16 12 O -0.48 -12.63 13.96 -14.22 -0.20 -12.83 16 13 N -0.68 -11.42 3.91 -9.84 -0.04 -11.46 16 14 C 0.18 3.06 6.31 -83.65 -0.53 2.53 16 15 C -0.16 -2.04 9.95 -39.31 -0.39 -2.43 16 16 C -0.07 -0.89 9.72 -39.62 -0.39 -1.27 16 17 C -0.12 -1.93 5.79 -104.31 -0.60 -2.54 16 18 C 0.25 5.44 9.44 -38.91 -0.37 5.07 16 19 C -0.12 -2.60 8.51 -39.17 -0.33 -2.93 16 20 O -0.71 -21.26 17.84 -57.22 -1.02 -22.28 16 21 O -0.53 -13.92 14.34 -57.22 -0.82 -14.74 16 22 C 0.06 1.26 7.08 36.95 0.26 1.52 16 23 C -0.09 -1.45 5.95 -28.21 -0.17 -1.62 16 24 H 0.05 0.71 5.82 -51.93 -0.30 0.41 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.29 7.56 -51.93 -0.39 0.90 16 27 H 0.06 0.77 5.67 -51.93 -0.29 0.47 16 28 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.06 0.68 4.91 -51.93 -0.26 0.42 16 30 H 0.07 1.39 7.83 -51.93 -0.41 0.99 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.90 7.07 -51.93 -0.37 0.53 16 33 H 0.41 5.37 5.07 -40.82 -0.21 5.17 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.17 4.32 6.19 -52.49 -0.32 4.00 16 37 H 0.31 8.55 9.26 45.56 0.42 8.97 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -36.39 330.78 -8.36 -44.75 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -4.83 Total: 15.08 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.78 Total: 0.92 kcal Atomic # 7 Polarization: -11.42 SS G_CDS: -0.04 Total: -11.46 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -2.91 Total: -66.76 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -3.78 Total: 12.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.39 -8.36 -44.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863867531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.482 kcal (2) G-P(sol) polarization free energy of solvation -36.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 47.17 seconds