Wall clock time and date at job start Thu Mar 26 2020 20:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 C 1.52996 * 109.47659 * 239.99738 * 2 1 3 5 5 C 1.53005 * 109.47134 * 119.99282 * 2 1 3 6 6 O 1.42904 * 109.46691 * 54.93062 * 5 2 1 7 7 Si 1.86291 * 109.47373 * 294.92955 * 5 2 1 8 8 H 1.48499 * 109.47392 * 59.99726 * 7 5 2 9 9 H 1.48504 * 109.47285 * 179.97438 * 7 5 2 10 10 H 1.48504 * 109.47258 * 299.99692 * 7 5 2 11 11 C 1.50699 * 109.47052 * 174.92512 * 5 2 1 12 12 O 1.21289 * 120.00239 * 248.37230 * 11 5 2 13 13 N 1.34781 * 119.99664 * 68.37572 * 11 5 2 14 14 C 1.39957 * 119.99637 * 175.64711 * 13 11 5 15 15 C 1.38999 * 120.08608 * 215.13240 * 14 13 11 16 16 C 1.38222 * 120.48766 * 180.09231 * 15 14 13 17 17 C 1.38136 * 120.14698 * 359.92136 * 16 15 14 18 18 C 1.39503 * 119.45249 * 359.95329 * 17 16 15 19 19 C 1.38767 * 120.64991 * 359.88884 * 18 17 16 20 Xx 1.57608 * 118.34660 * 180.29219 * 18 17 16 21 20 O 1.41993 * 122.03638 * 171.37103 * 20 18 17 22 21 O 1.43356 * 115.93471 * 351.35092 * 20 18 17 23 22 C 1.43323 * 111.34788 * 41.24286 * 22 20 18 24 23 C 1.50453 * 120.25790 * 179.76090 * 17 16 15 25 24 H 1.09004 * 109.47090 * 299.99862 * 1 2 3 26 25 H 1.08991 * 109.47198 * 60.00719 * 1 2 3 27 26 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 28 27 H 1.09004 * 109.47621 * 187.21429 * 3 2 1 29 28 H 1.09007 * 109.47020 * 307.21308 * 3 2 1 30 29 H 1.09002 * 109.47357 * 67.20953 * 3 2 1 31 30 H 1.09006 * 109.46667 * 300.00041 * 4 2 1 32 31 H 1.09001 * 109.47136 * 59.99486 * 4 2 1 33 32 H 1.08992 * 109.47268 * 179.97438 * 4 2 1 34 33 H 0.97000 * 120.00140 * 355.65021 * 13 11 5 35 34 H 1.07998 * 119.75899 * 0.06995 * 15 14 13 36 35 H 1.07999 * 119.92737 * 179.90160 * 16 15 14 37 36 H 1.07995 * 120.28022 * 180.11897 * 19 18 17 38 37 H 0.96695 * 114.00735 * 179.97438 * 21 20 18 39 38 H 1.08993 * 109.32794 * 174.09083 * 23 22 20 40 39 H 1.09000 * 109.32067 * 54.61393 * 23 22 20 41 40 H 1.08996 * 109.13923 * 277.44728 * 24 17 16 42 41 H 1.09004 * 109.13609 * 36.63606 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 8 1.4689 -2.0296 1.3105 7 14 1.5491 0.2422 2.7664 8 1 0.0693 0.3504 2.8267 9 1 2.0436 -0.4580 3.9790 10 1 2.1426 1.6020 2.7029 11 6 3.5418 -0.8309 1.1881 12 8 4.0652 -1.9154 1.0431 13 7 4.3032 0.2761 1.2946 14 6 5.6979 0.1653 1.3294 15 6 6.4468 1.0362 2.1122 16 6 7.8248 0.9355 2.1512 17 6 8.4706 -0.0359 1.4113 18 6 7.7206 -0.9126 0.6270 19 6 6.3368 -0.8182 0.5866 20 8 7.7976 -3.0567 -0.8801 21 8 9.9125 -1.9027 -0.2277 22 6 10.4318 -1.5463 1.0597 23 6 9.9708 -0.1444 1.4477 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1224 1.4453 -0.1291 28 1 1.5751 1.9922 -0.8185 29 1 1.7858 1.9178 0.9474 30 1 1.6768 -1.7490 -1.2490 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7208 -1.2493 33 1 3.8846 1.1495 1.3472 34 1 5.9484 1.7975 2.6939 35 1 8.3979 1.6179 2.7613 36 1 5.7619 -1.5012 -0.0211 37 1 8.3790 -3.6686 -1.3518 38 1 11.5210 -1.5724 1.0292 39 1 10.0770 -2.2611 1.8022 40 1 10.3983 0.5776 0.7520 41 1 10.3209 0.0798 2.4553 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863867531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 20:11:56 Heat of formation + Delta-G solvation = 17.396242 kcal Electronic energy + Delta-G solvation = -24687.574770 eV Core-core repulsion = 21040.654192 eV Total energy + Delta-G solvation = -3646.920577 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.142 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -41.95649 -40.21478 -37.80876 -37.04701 -35.55169 -32.84075 -32.29607 -32.04420 -31.96289 -29.38138 -28.18091 -27.91742 -26.30068 -24.16565 -24.07738 -21.95310 -21.54265 -19.89080 -18.26248 -17.78868 -17.21529 -16.91350 -16.28464 -16.12336 -15.73347 -15.41627 -15.22052 -15.05175 -14.75120 -14.63464 -14.61713 -14.34157 -14.18822 -14.12514 -13.54529 -13.39877 -12.99048 -12.94028 -12.86622 -12.61921 -12.46762 -12.07018 -11.76548 -11.58837 -11.52284 -11.41553 -11.06977 -10.90962 -10.75214 -10.65752 -10.53035 -9.70875 -9.44129 -8.24456 -7.70002 -6.51744 -2.73097 -0.49458 -0.29560 1.23929 1.33931 1.48489 1.76253 2.03813 2.19541 2.59731 2.97437 3.23585 3.43924 3.66495 3.81607 4.06463 4.11860 4.15058 4.18951 4.26074 4.39131 4.44716 4.54768 4.58412 4.73388 4.74756 4.77758 4.81712 4.90504 4.92602 4.96105 4.97342 5.12456 5.13868 5.15507 5.23400 5.33091 5.47939 5.49681 5.61377 5.79412 6.37464 6.87518 7.25799 7.90946 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.004873 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.544223 B = 5744.343654 C = 6288.088076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.163 4.163 4 C -0.111 4.111 5 C -0.043 4.043 6 O -0.900 6.900 7 Si 0.942 3.058 8 H -0.269 1.269 9 H -0.317 1.317 10 H -0.188 1.188 11 C 0.478 3.522 12 O -0.570 6.570 13 N -0.669 5.669 14 C 0.182 3.818 15 C -0.112 4.112 16 C -0.014 4.014 17 C -0.093 4.093 18 C 0.265 3.735 19 C -0.166 4.166 20 O -0.867 6.867 21 O -0.437 6.437 22 C 0.015 3.985 23 C -0.100 4.100 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.433 0.567 34 H 0.215 0.785 35 H 0.250 0.750 36 H 0.123 0.877 37 H 0.299 0.701 38 H 0.183 0.817 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.949 23.853 8.257 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.220 4.220 4 C -0.168 4.168 5 C -0.144 4.144 6 O -0.846 6.846 7 Si 0.767 3.233 8 H -0.195 1.195 9 H -0.245 1.245 10 H -0.112 1.112 11 C 0.271 3.729 12 O -0.446 6.446 13 N -0.325 5.325 14 C 0.085 3.915 15 C -0.132 4.132 16 C -0.031 4.031 17 C -0.094 4.094 18 C 0.256 3.744 19 C -0.186 4.186 20 O -0.692 6.692 21 O -0.382 6.382 22 C -0.067 4.067 23 C -0.136 4.136 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.030 0.970 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.278 0.722 34 H 0.232 0.768 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.197 0.803 39 H 0.097 0.903 40 H 0.138 0.862 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 13.225 23.675 8.989 28.569 hybrid contribution 0.058 -3.181 -1.835 3.673 sum 13.283 20.493 7.154 25.448 Atomic orbital electron populations 1.21630 0.94481 1.00384 1.01416 1.21079 0.96616 0.95632 0.95652 1.22328 1.01483 0.93908 1.04273 1.21542 0.97971 0.99186 0.98123 1.24912 0.85301 1.02061 1.02107 1.94996 1.75603 1.20971 1.92991 0.86530 0.81076 0.77626 0.78094 1.19456 1.24537 1.11151 1.25053 0.93802 0.82712 0.71298 1.90531 1.75217 1.30834 1.48007 1.44854 1.02461 1.11946 1.73273 1.18085 0.85326 0.94268 0.93775 1.22144 0.94732 0.99985 0.96307 1.21795 0.92830 0.93321 0.95150 1.21072 1.00560 0.93109 0.94663 1.29519 0.84820 0.73064 0.87027 1.21425 0.91893 1.02145 1.03165 1.93632 1.43207 1.55944 1.76386 1.95175 1.27797 1.90630 1.24589 1.23473 0.98230 0.96067 0.88912 1.21597 0.85806 0.98215 1.07972 0.92629 0.90585 0.95898 0.91829 0.89344 0.90086 0.97010 0.90908 0.96331 0.72153 0.76843 0.73387 0.85927 0.87045 0.80290 0.90345 0.86250 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 68. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 7.90 71.98 0.57 -4.51 16 2 C -0.09 -3.88 0.38 -52.18 -0.02 -3.90 16 3 C -0.16 -4.68 6.90 71.98 0.50 -4.18 16 4 C -0.11 -5.29 8.05 71.98 0.58 -4.71 16 5 C -0.04 -2.34 0.31 29.85 0.01 -2.33 16 6 O -0.90 -65.78 15.87 -130.08 -2.06 -67.85 16 7 Si 0.94 39.75 22.26 68.60 1.53 41.28 16 8 H -0.27 -11.52 6.41 99.48 0.64 -10.88 16 9 H -0.32 -15.17 7.11 99.48 0.71 -14.46 16 10 H -0.19 -4.76 6.01 99.48 0.60 -4.17 16 11 C 0.48 24.95 4.35 87.66 0.38 25.33 16 12 O -0.57 -37.23 13.96 15.85 0.22 -37.01 16 13 N -0.67 -23.66 3.91 -303.41 -1.19 -24.85 16 14 C 0.18 5.58 6.31 38.17 0.24 5.82 16 15 C -0.11 -1.50 9.95 22.45 0.22 -1.28 16 16 C -0.01 -0.10 9.72 22.24 0.22 0.11 16 17 C -0.09 -1.67 5.79 -19.66 -0.11 -1.79 16 18 C 0.27 9.66 9.44 22.70 0.21 9.88 16 19 C -0.17 -6.95 8.51 22.54 0.19 -6.76 16 20 O -0.87 -56.10 17.84 -127.95 -2.28 -58.39 16 21 O -0.44 -17.56 14.34 -127.95 -1.83 -19.39 16 22 C 0.01 0.31 7.08 71.85 0.51 0.82 16 23 C -0.10 -1.03 5.95 29.64 0.18 -0.86 16 24 H 0.05 2.12 5.82 -2.39 -0.01 2.11 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.02 1.13 7.56 -2.39 -0.02 1.11 16 27 H 0.06 1.68 5.67 -2.39 -0.01 1.67 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.08 1.92 4.91 -2.39 -0.01 1.90 16 30 H 0.01 0.62 7.83 -2.38 -0.02 0.61 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.02 0.89 7.07 -2.39 -0.02 0.88 16 33 H 0.43 11.06 5.07 -92.71 -0.47 10.59 16 34 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.25 -1.80 8.06 -2.91 -0.02 -1.82 16 36 H 0.12 7.04 6.19 -2.91 -0.02 7.02 16 37 H 0.30 17.98 9.26 -74.06 -0.69 17.30 16 38 H 0.18 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 41 H 0.16 -0.19 8.12 -2.38 -0.02 -0.21 16 Total: -1.00 -128.98 330.78 -1.45 -130.43 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.49 Total: 24.12 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 3.67 Total: 11.64 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: -1.19 Total: -24.85 kcal Atomic # 8 Polarization: -176.67 SS G_CDS: -5.96 Total: -182.63 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.53 Total: 41.28 kcal Total: -128.98 -1.45 -130.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863867531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.829 kcal (2) G-P(sol) polarization free energy of solvation -128.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -130.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds