Wall clock time and date at job start Thu Mar 26 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38234 * 120.00469 * 2 1 4 4 C 1.38232 * 120.00339 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00030 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99979 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.46918 * 210.00043 * 6 5 4 8 8 Si 1.86292 * 109.47307 * 330.00197 * 6 5 4 9 9 H 1.48494 * 109.47299 * 179.97438 * 8 6 5 10 10 H 1.48503 * 109.47205 * 300.00093 * 8 6 5 11 11 H 1.48508 * 109.47083 * 59.99612 * 8 6 5 12 12 C 1.50700 * 109.46621 * 90.00246 * 6 5 4 13 13 O 1.21284 * 119.99811 * 125.00025 * 12 6 5 14 14 N 1.34774 * 120.00425 * 304.99741 * 12 6 5 15 15 C 1.46493 * 120.00367 * 180.02562 * 14 12 6 16 16 C 1.50696 * 109.47181 * 180.02562 * 15 14 12 17 17 N 1.28714 * 124.72563 * 90.00147 * 16 15 14 18 18 C 1.33527 * 115.75514 * 179.97438 * 17 16 15 19 19 C 1.43205 * 123.13470 * 179.97438 * 18 17 16 20 20 N 7.85297 * 94.56115 * 63.80434 * 2 1 3 21 21 C 1.35187 * 113.73517 * 0.22998 * 18 17 16 22 22 S 1.70774 * 124.72969 * 269.95775 * 16 15 14 23 23 C 1.38231 * 119.99959 * 0.25587 * 5 4 3 24 24 C 1.38239 * 120.00145 * 359.46472 * 23 5 4 25 25 H 1.09004 * 109.47169 * 89.99765 * 1 2 3 26 26 H 1.09001 * 109.47306 * 209.99941 * 1 2 3 27 27 H 1.08996 * 109.46806 * 330.00141 * 1 2 3 28 28 H 1.08008 * 119.99657 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.99942 * 179.97438 * 4 3 2 30 30 H 0.97000 * 119.99713 * 0.02562 * 14 12 6 31 31 H 1.08998 * 109.47435 * 59.99568 * 15 14 12 32 32 H 1.09009 * 109.47053 * 300.00189 * 15 14 12 33 33 H 1.08000 * 125.58347 * 179.76155 * 21 18 17 34 34 H 1.08005 * 120.00274 * 179.72801 * 23 5 4 35 35 H 1.07997 * 120.00392 * 180.28044 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7788 -0.0001 0.0005 7 8 6.2551 -1.1669 -0.6731 8 14 6.3998 1.5210 -0.8776 9 1 7.8848 1.5213 -0.8770 10 1 5.9048 1.5211 -2.2777 11 1 5.9048 2.7335 -0.1775 12 6 6.2810 -0.0002 1.4214 13 8 7.0511 -0.8606 1.7923 14 7 5.8745 0.9559 2.2799 15 6 6.3631 0.9561 3.6610 16 6 5.7616 2.1195 4.4064 17 7 4.6525 2.0783 5.0582 18 6 4.2870 3.2159 5.6542 19 6 3.0835 3.3473 6.4190 20 7 2.1315 3.4556 7.0241 21 6 5.1563 4.2336 5.4637 22 16 6.4572 3.6761 4.5051 23 6 3.5806 -1.1972 -0.0053 24 6 2.1982 -1.1972 0.0000 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1325 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 5.2583 1.6439 1.9834 31 1 7.4494 1.0459 3.6621 32 1 6.0751 0.0246 4.1485 33 1 5.0476 5.2344 5.8548 34 1 4.1205 -2.1325 -0.0098 35 1 1.6582 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538516949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 22:54:05 Heat of formation + Delta-G solvation = 9.065606 kcal Electronic energy + Delta-G solvation = -23054.592096 eV Core-core repulsion = 19531.037740 eV Total energy + Delta-G solvation = -3523.554356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35146 -38.97194 -37.94625 -36.67520 -34.24131 -33.23959 -31.14602 -30.31374 -29.97065 -27.82539 -26.40756 -25.43452 -23.16924 -21.83528 -21.08174 -20.33720 -19.50870 -18.92627 -17.35146 -16.35865 -15.80073 -15.16939 -15.14652 -14.77306 -14.74537 -14.26575 -13.93090 -13.54581 -13.48971 -13.31608 -13.25152 -13.15260 -12.84747 -12.63719 -12.44502 -12.25095 -11.97630 -11.90684 -11.62897 -11.20020 -10.50985 -10.40060 -10.32674 -10.09068 -10.01463 -9.86097 -9.55579 -9.29204 -8.83087 -8.34868 -8.11242 -7.56381 -6.03502 -5.51105 0.12688 0.89196 1.28814 1.66003 2.14086 2.24806 2.32915 3.15045 3.23360 3.29211 3.37441 3.41313 3.83691 4.05401 4.26765 4.48780 4.71060 4.72984 4.79905 5.28124 5.41860 5.46497 5.67385 5.72678 5.80483 5.83690 5.90539 6.12715 6.18139 6.37911 6.54794 6.69456 6.88507 6.94766 7.09743 7.12804 7.25991 7.26470 7.39327 7.71931 7.92468 8.36171 9.31776 9.90606 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.005454 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.528784 B = 5132.238871 C = 6672.241543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.155 4.155 5 C -0.061 4.061 6 C 0.026 3.974 7 O -0.807 6.807 8 Si 0.931 3.069 9 H -0.276 1.276 10 H -0.269 1.269 11 H -0.295 1.295 12 C 0.495 3.505 13 O -0.530 6.530 14 N -0.745 5.745 15 C 0.191 3.809 16 C 0.027 3.973 17 N -0.422 5.422 18 C 0.123 3.877 19 C 0.294 3.706 20 N -0.396 5.396 21 C -0.246 4.246 22 S 0.260 5.740 23 C -0.078 4.078 24 C -0.128 4.128 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.395 0.605 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.191 0.809 34 H 0.129 0.871 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 12.649 8.356 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.173 4.173 5 C -0.063 4.063 6 C -0.078 4.078 7 O -0.750 6.750 8 Si 0.759 3.241 9 H -0.202 1.202 10 H -0.194 1.194 11 H -0.225 1.225 12 C 0.285 3.715 13 O -0.404 6.404 14 N -0.406 5.406 15 C 0.064 3.936 16 C -0.253 4.253 17 N -0.137 5.137 18 C -0.014 4.014 19 C -0.025 4.025 20 N -0.073 5.073 21 C -0.392 4.392 22 S 0.518 5.482 23 C -0.096 4.096 24 C -0.146 4.146 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.208 0.792 34 H 0.147 0.853 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.785 12.486 8.548 15.386 hybrid contribution -1.047 0.304 0.434 1.174 sum -3.832 12.790 8.983 16.093 Atomic orbital electron populations 1.20667 0.92310 1.01768 1.01341 1.19683 0.95089 0.93547 1.03465 1.20753 0.94016 0.96673 1.02642 1.21198 0.94254 0.98062 1.03816 1.21398 0.99185 0.92103 0.93572 1.22602 0.88765 1.07363 0.89076 1.95090 1.81231 1.30515 1.68188 0.86584 0.80155 0.74820 0.82503 1.20203 1.19351 1.22469 1.24020 0.79915 0.78666 0.88885 1.90468 1.35228 1.36720 1.77947 1.46797 1.51348 1.33588 1.08895 1.19753 0.97715 0.92677 0.83454 1.27336 0.94950 1.00864 1.02135 1.66935 1.13444 1.24982 1.08352 1.15656 0.93296 0.89740 1.02732 1.24072 0.91589 0.93924 0.92941 1.81141 1.09728 1.06948 1.09481 1.26631 1.00249 1.05407 1.06873 1.83154 1.19742 1.04279 1.41029 1.21094 0.92403 0.99579 0.96483 1.21027 0.94595 0.96689 1.02305 0.92100 0.92291 0.92396 0.87318 0.86660 0.77110 0.89363 0.88679 0.79214 0.85326 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.01 36.01 0.36 -1.05 16 2 C -0.12 -2.09 5.88 -104.62 -0.62 -2.70 16 3 C -0.12 -2.20 9.70 -39.59 -0.38 -2.58 16 4 C -0.16 -3.14 7.64 -39.59 -0.30 -3.45 16 5 C -0.06 -1.48 4.39 -104.63 -0.46 -1.94 16 6 C 0.03 0.70 0.70 -29.03 -0.02 0.68 16 7 O -0.81 -27.52 16.18 -55.09 -0.89 -28.41 16 8 Si 0.93 21.94 24.29 -169.99 -4.13 17.81 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -5.62 6.38 56.52 0.36 -5.26 16 12 C 0.50 12.53 5.95 -10.99 -0.07 12.46 16 13 O -0.53 -15.26 16.51 -14.31 -0.24 -15.50 16 14 N -0.75 -14.43 5.09 -61.48 -0.31 -14.74 16 15 C 0.19 2.96 6.24 -5.20 -0.03 2.93 16 16 C 0.03 0.34 6.71 -13.59 -0.09 0.25 16 17 N -0.42 -5.87 10.67 -9.65 -0.10 -5.97 16 18 C 0.12 1.42 6.55 -86.29 -0.57 0.86 16 19 C 0.29 3.75 15.74 -22.56 -0.36 3.39 16 20 N -0.40 -5.66 18.52 41.73 0.77 -4.89 16 21 C -0.25 -2.02 10.89 29.65 0.32 -1.70 16 22 S 0.26 2.23 22.92 -107.50 -2.46 -0.23 16 23 C -0.08 -1.84 9.35 -39.58 -0.37 -2.21 16 24 C -0.13 -2.51 9.70 -39.58 -0.38 -2.89 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.12 2.12 5.26 -52.48 -0.28 1.84 16 30 H 0.39 7.01 6.71 -40.82 -0.27 6.74 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 33 H 0.19 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.13 3.34 7.48 -52.48 -0.39 2.95 16 35 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -36.53 328.44 -8.53 -45.06 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -3.16 Total: -0.14 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.96 Total: 2.06 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.36 Total: -25.60 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.13 Total: -43.91 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.13 Total: 17.81 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.46 Total: -0.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.53 -8.53 -45.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538516949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.129 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds