Wall clock time and date at job start Thu Mar 26 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38234 * 120.00469 * 2 1 4 4 C 1.38232 * 120.00339 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00030 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99979 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.46918 * 210.00043 * 6 5 4 8 8 Si 1.86292 * 109.47307 * 330.00197 * 6 5 4 9 9 H 1.48494 * 109.47299 * 179.97438 * 8 6 5 10 10 H 1.48503 * 109.47205 * 300.00093 * 8 6 5 11 11 H 1.48508 * 109.47083 * 59.99612 * 8 6 5 12 12 C 1.50700 * 109.46621 * 90.00246 * 6 5 4 13 13 O 1.21284 * 119.99811 * 125.00025 * 12 6 5 14 14 N 1.34774 * 120.00425 * 304.99741 * 12 6 5 15 15 C 1.46493 * 120.00367 * 180.02562 * 14 12 6 16 16 C 1.50696 * 109.47181 * 180.02562 * 15 14 12 17 17 N 1.28714 * 124.72563 * 90.00147 * 16 15 14 18 18 C 1.33527 * 115.75514 * 179.97438 * 17 16 15 19 19 C 1.43205 * 123.13470 * 179.97438 * 18 17 16 20 20 N 7.85297 * 94.56115 * 63.80434 * 2 1 3 21 21 C 1.35187 * 113.73517 * 0.22998 * 18 17 16 22 22 S 1.70774 * 124.72969 * 269.95775 * 16 15 14 23 23 C 1.38231 * 119.99959 * 0.25587 * 5 4 3 24 24 C 1.38239 * 120.00145 * 359.46472 * 23 5 4 25 25 H 1.09004 * 109.47169 * 89.99765 * 1 2 3 26 26 H 1.09001 * 109.47306 * 209.99941 * 1 2 3 27 27 H 1.08996 * 109.46806 * 330.00141 * 1 2 3 28 28 H 1.08008 * 119.99657 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.99942 * 179.97438 * 4 3 2 30 30 H 0.97000 * 119.99713 * 0.02562 * 14 12 6 31 31 H 1.08998 * 109.47435 * 59.99568 * 15 14 12 32 32 H 1.09009 * 109.47053 * 300.00189 * 15 14 12 33 33 H 1.08000 * 125.58347 * 179.76155 * 21 18 17 34 34 H 1.08005 * 120.00274 * 179.72801 * 23 5 4 35 35 H 1.07997 * 120.00392 * 180.28044 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7788 -0.0001 0.0005 7 8 6.2551 -1.1669 -0.6731 8 14 6.3998 1.5210 -0.8776 9 1 7.8848 1.5213 -0.8770 10 1 5.9048 1.5211 -2.2777 11 1 5.9048 2.7335 -0.1775 12 6 6.2810 -0.0002 1.4214 13 8 7.0511 -0.8606 1.7923 14 7 5.8745 0.9559 2.2799 15 6 6.3631 0.9561 3.6610 16 6 5.7616 2.1195 4.4064 17 7 4.6525 2.0783 5.0582 18 6 4.2870 3.2159 5.6542 19 6 3.0835 3.3473 6.4190 20 7 2.1315 3.4556 7.0241 21 6 5.1563 4.2336 5.4637 22 16 6.4572 3.6761 4.5051 23 6 3.5806 -1.1972 -0.0053 24 6 2.1982 -1.1972 0.0000 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1325 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 5.2583 1.6439 1.9834 31 1 7.4494 1.0459 3.6621 32 1 6.0751 0.0246 4.1485 33 1 5.0476 5.2344 5.8548 34 1 4.1205 -2.1325 -0.0098 35 1 1.6582 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538516949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 22:54:04 Heat of formation + Delta-G solvation = -19.534029 kcal Electronic energy + Delta-G solvation = -23055.832269 eV Core-core repulsion = 19531.037740 eV Total energy + Delta-G solvation = -3524.794530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29812 -40.65015 -39.63298 -37.68857 -35.82482 -34.90512 -32.25789 -32.06407 -31.59925 -29.15604 -27.84969 -26.44963 -24.80726 -23.42499 -22.19528 -21.91390 -20.74055 -20.28951 -18.17424 -17.97775 -17.21646 -16.88790 -16.44605 -16.06434 -15.94226 -15.78214 -15.38947 -15.04769 -14.62546 -14.57388 -14.39489 -14.27367 -14.19756 -14.12293 -13.82802 -13.70120 -13.31401 -13.02743 -12.73525 -12.72596 -12.28720 -12.20774 -11.97725 -11.69964 -11.32785 -11.01045 -10.91492 -10.73421 -10.04515 -9.99876 -9.70310 -9.20885 -8.32804 -7.73890 -0.64720 0.12525 0.49543 0.55112 0.64824 0.71127 1.24216 1.37356 1.39056 1.50465 1.97095 2.27715 2.46549 2.55155 2.74366 3.07919 3.24201 3.92549 4.07212 4.11269 4.13180 4.27966 4.29993 4.45908 4.53590 4.60949 4.65413 4.77573 4.90160 4.92871 4.99416 5.08106 5.31488 5.41767 5.52999 5.67434 5.79783 6.05997 6.18976 6.31567 6.40542 6.64604 7.43058 7.91631 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.005454 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.528784 B = 5132.238871 C = 6672.241543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.111 4.111 3 C -0.112 4.112 4 C -0.155 4.155 5 C -0.090 4.090 6 C -0.034 4.034 7 O -0.900 6.900 8 Si 0.965 3.035 9 H -0.297 1.297 10 H -0.280 1.280 11 H -0.204 1.204 12 C 0.495 3.505 13 O -0.586 6.586 14 N -0.726 5.726 15 C 0.191 3.809 16 C -0.015 4.015 17 N -0.452 5.452 18 C 0.090 3.910 19 C 0.311 3.689 20 N -0.434 5.434 21 C -0.210 4.210 22 S 0.359 5.641 23 C -0.119 4.119 24 C -0.129 4.129 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.141 0.859 30 H 0.406 0.594 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.077 0.923 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 18.301 9.325 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.130 4.130 4 C -0.173 4.173 5 C -0.091 4.091 6 C -0.133 4.133 7 O -0.847 6.847 8 Si 0.788 3.212 9 H -0.224 1.224 10 H -0.206 1.206 11 H -0.128 1.128 12 C 0.285 3.715 13 O -0.465 6.465 14 N -0.385 5.385 15 C 0.065 3.935 16 C -0.293 4.293 17 N -0.168 5.168 18 C -0.046 4.046 19 C -0.007 4.007 20 N -0.111 5.111 21 C -0.355 4.355 22 S 0.616 5.384 23 C -0.138 4.138 24 C -0.147 4.147 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.175 0.825 29 H 0.159 0.841 30 H 0.242 0.758 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.095 0.905 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.877 18.207 9.573 21.141 hybrid contribution -0.453 -1.405 0.221 1.492 sum -5.330 16.803 9.794 20.166 Atomic orbital electron populations 1.20744 0.88540 1.03482 1.02992 1.20233 0.97708 0.92462 1.00688 1.21288 0.93096 0.98647 0.99922 1.21366 0.95579 0.97010 1.03353 1.21127 0.97590 0.93847 0.96513 1.23603 0.91145 1.08265 0.90299 1.94985 1.83354 1.35282 1.71062 0.86036 0.78344 0.75525 0.81267 1.22449 1.20570 1.12809 1.23596 0.79392 0.79066 0.89465 1.90416 1.37945 1.39125 1.79009 1.46301 1.50241 1.31914 1.10002 1.19713 0.98729 0.93895 0.81147 1.26651 0.96144 1.02545 1.03928 1.66798 1.14390 1.26957 1.08656 1.15588 0.94062 0.90299 1.04644 1.24259 0.91406 0.92910 0.92159 1.81154 1.10874 1.08120 1.10995 1.27202 0.98290 1.06180 1.03870 1.82890 1.17455 0.99423 1.38608 1.20925 0.94452 0.98048 1.00356 1.21214 0.92751 0.99046 1.01672 0.90290 0.91397 0.90005 0.82505 0.84139 0.75842 0.87837 0.91000 0.75084 0.90466 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 10.01 71.24 0.71 -1.54 16 2 C -0.11 -3.59 5.88 -19.86 -0.12 -3.71 16 3 C -0.11 -3.52 9.70 22.27 0.22 -3.30 16 4 C -0.16 -5.89 7.64 22.27 0.17 -5.72 16 5 C -0.09 -4.46 4.39 -19.87 -0.09 -4.54 16 6 C -0.03 -1.93 0.70 29.10 0.02 -1.91 16 7 O -0.90 -67.19 16.18 -129.99 -2.10 -69.30 16 8 Si 0.97 44.34 24.29 68.60 1.67 46.00 16 9 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.20 -6.36 6.38 99.48 0.63 -5.73 16 12 C 0.49 26.33 5.95 87.66 0.52 26.85 16 13 O -0.59 -36.53 16.51 15.95 0.26 -36.27 16 14 N -0.73 -28.04 5.09 -466.80 -2.37 -30.42 16 15 C 0.19 5.93 6.24 85.63 0.53 6.47 16 16 C -0.01 -0.34 6.71 88.56 0.59 0.26 16 17 N -0.45 -11.70 10.67 -184.43 -1.97 -13.67 16 18 C 0.09 1.80 6.55 39.43 0.26 2.06 16 19 C 0.31 7.25 15.74 88.37 1.39 8.65 16 20 N -0.43 -11.77 18.52 18.97 0.35 -11.42 16 21 C -0.21 -2.29 10.89 67.12 0.73 -1.56 16 22 S 0.36 4.32 22.92 -56.49 -1.29 3.03 16 23 C -0.12 -6.10 9.35 22.27 0.21 -5.89 16 24 C -0.13 -5.11 9.70 22.27 0.22 -4.89 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 27 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.14 4.44 5.26 -2.91 -0.02 4.43 16 30 H 0.41 13.53 6.71 -92.71 -0.62 12.91 16 31 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.23 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.08 4.60 7.48 -2.91 -0.02 4.58 16 35 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -94.12 328.44 1.13 -92.99 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.22 Total: 7.83 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.37 Total: 11.23 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -3.99 Total: -55.51 kcal Atomic # 8 Polarization: -103.73 SS G_CDS: -1.84 Total: -105.57 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.00 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.29 Total: 3.03 kcal Total: -94.12 1.13 -92.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538516949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.454 kcal (2) G-P(sol) polarization free energy of solvation -94.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds