Wall clock time and date at job start Thu Mar 26 2020 19:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 119.99746 * 2 1 4 4 C 1.38235 * 120.00108 * 180.02562 * 3 2 1 5 5 C 1.38243 * 119.99617 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99586 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.46779 * 209.99512 * 6 5 4 8 8 Si 1.86295 * 109.47371 * 329.99698 * 6 5 4 9 9 H 1.48499 * 109.47090 * 60.00039 * 8 6 5 10 10 H 1.48496 * 109.47219 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47357 * 300.00496 * 8 6 5 12 12 C 1.50703 * 109.47001 * 89.99822 * 6 5 4 13 13 O 1.21280 * 119.99810 * 124.99522 * 12 6 5 14 14 N 1.34769 * 120.00194 * 304.99826 * 12 6 5 15 15 C 1.46505 * 120.00085 * 179.97438 * 14 12 6 16 16 C 1.50699 * 109.46767 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.74805 * 90.00462 * 16 15 14 18 18 C 1.38457 * 119.38363 * 179.97438 * 17 16 15 19 19 N 1.31588 * 120.91461 * 359.97438 * 18 17 16 20 20 C 1.32790 * 121.62176 * 359.97438 * 19 18 17 21 21 C 1.43200 * 119.73859 * 180.02562 * 20 19 18 22 22 N 8.94254 * 139.70590 * 243.89235 * 3 1 2 23 23 C 1.38488 * 120.74928 * 269.71995 * 16 15 14 24 24 C 1.38233 * 120.00248 * 0.25361 * 5 4 3 25 25 C 1.38234 * 120.00172 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47244 * 90.00349 * 1 2 3 27 27 H 1.09004 * 109.46985 * 210.00150 * 1 2 3 28 28 H 1.08995 * 109.47261 * 329.99927 * 1 2 3 29 29 H 1.08000 * 120.00578 * 359.97438 * 3 2 1 30 30 H 1.07999 * 120.00165 * 179.97438 * 4 3 2 31 31 H 0.97009 * 119.99870 * 0.02562 * 14 12 6 32 32 H 1.09001 * 109.47023 * 299.99667 * 15 14 12 33 33 H 1.08992 * 109.46626 * 60.00043 * 15 14 12 34 34 H 1.07997 * 120.30320 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.54435 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.47277 * 359.97438 * 23 16 15 37 37 H 1.08004 * 119.99934 * 179.72684 * 24 5 4 38 38 H 1.07999 * 120.00024 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 8 6.2545 -1.1663 -0.6772 8 14 6.3990 1.5216 -0.8808 9 1 5.9045 2.7338 -0.1800 10 1 7.8839 1.5220 -0.8814 11 1 5.9029 1.5223 -2.2805 12 6 6.2821 -0.0004 1.4177 13 8 7.0525 -0.8609 1.7876 14 7 5.8762 0.9553 2.2769 15 6 6.3652 0.9544 3.6579 16 6 5.7654 2.1184 4.4038 17 6 4.5622 1.9828 5.0806 18 6 4.0370 3.0707 5.7571 19 7 4.6635 4.2278 5.7664 20 6 5.8176 4.3998 5.1325 21 6 6.4651 5.6765 5.1696 22 7 6.9708 6.6946 5.1932 23 6 6.4059 3.3459 4.4340 24 6 3.5805 -1.1971 -0.0074 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6581 2.1325 -0.0004 30 1 4.1204 2.1326 -0.0010 31 1 5.2597 1.6434 1.9810 32 1 6.0767 0.0228 4.1449 33 1 7.4514 1.0437 3.6587 34 1 4.0404 1.0373 5.0804 35 1 3.1001 2.9682 6.2846 36 1 7.3467 3.4855 3.9222 37 1 4.1206 -2.1324 -0.0127 38 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448860068.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 19:56:09 Heat of formation + Delta-G solvation = -3.212314 kcal Electronic energy + Delta-G solvation = -24428.156009 eV Core-core repulsion = 20814.916996 eV Total energy + Delta-G solvation = -3613.239013 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70715 -39.01779 -37.99572 -36.74733 -34.92821 -33.30912 -32.07318 -31.88566 -30.36218 -30.02935 -27.28702 -26.23970 -24.82663 -23.54264 -22.43966 -21.88869 -20.39545 -19.31433 -18.63298 -17.04190 -16.46050 -16.12512 -15.41644 -15.23824 -14.90922 -14.82904 -14.69629 -14.27892 -13.91517 -13.51878 -13.40993 -13.37162 -13.12805 -13.04117 -12.71155 -12.64174 -12.51608 -12.34985 -12.03610 -11.96327 -11.60164 -11.25394 -10.55543 -10.43362 -10.37596 -10.13164 -9.97739 -9.89481 -9.57781 -9.45879 -8.87721 -8.34475 -8.17743 -7.61972 -6.06226 -5.53901 0.30639 0.82105 2.07727 2.18310 2.29541 2.57516 3.15369 3.25425 3.27214 3.35968 3.59306 3.82261 4.13170 4.33148 4.40290 4.46759 4.63766 4.67559 4.75589 4.98776 5.28651 5.36066 5.40336 5.52116 5.56062 5.66850 5.76005 5.82428 5.84820 6.06488 6.08640 6.13491 6.21727 6.32663 6.49014 6.67927 6.82695 6.88961 7.11849 7.15769 7.20850 7.33774 7.44037 7.66598 7.86494 8.36404 9.30914 9.88404 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.004809 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.003527 B = 5820.934074 C = 6772.822003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.155 4.155 5 C -0.060 4.060 6 C 0.026 3.974 7 O -0.808 6.808 8 Si 0.930 3.070 9 H -0.295 1.295 10 H -0.278 1.278 11 H -0.269 1.269 12 C 0.493 3.507 13 O -0.531 6.531 14 N -0.746 5.746 15 C 0.152 3.848 16 C -0.048 4.048 17 C -0.125 4.125 18 C 0.108 3.892 19 N -0.453 5.453 20 C 0.185 3.815 21 C 0.271 3.729 22 N -0.394 5.394 23 C -0.104 4.104 24 C -0.078 4.078 25 C -0.129 4.129 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.394 0.606 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.149 0.851 37 H 0.129 0.871 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 6.184 9.808 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.173 4.173 5 C -0.062 4.062 6 C -0.078 4.078 7 O -0.751 6.751 8 Si 0.758 3.242 9 H -0.225 1.225 10 H -0.204 1.204 11 H -0.194 1.194 12 C 0.283 3.717 13 O -0.406 6.406 14 N -0.406 5.406 15 C 0.028 3.972 16 C -0.057 4.057 17 C -0.146 4.146 18 C -0.052 4.052 19 N -0.164 5.164 20 C 0.047 3.953 21 C -0.047 4.047 22 N -0.070 5.070 23 C -0.127 4.127 24 C -0.096 4.096 25 C -0.147 4.147 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.228 0.772 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.187 0.813 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.771 8.217 9.947 15.062 hybrid contribution -0.308 -0.832 -0.398 0.972 sum -8.079 7.384 9.550 14.526 Atomic orbital electron populations 1.20667 0.92277 1.01735 1.01414 1.19681 0.95084 0.93506 1.03556 1.20765 0.93982 0.96690 1.02644 1.21226 0.94270 0.98104 1.03743 1.21421 0.99208 0.92087 0.93443 1.22576 0.88748 1.07230 0.89246 1.95090 1.81241 1.30514 1.68286 0.86603 0.80200 0.74913 0.82490 1.22495 1.20355 1.19385 1.23953 0.79987 0.78836 0.88903 1.90464 1.35160 1.36974 1.77962 1.46781 1.51220 1.33249 1.09392 1.20151 0.98900 0.94232 0.83875 1.20509 0.94406 0.95050 0.95702 1.22473 0.95212 1.01233 0.95672 1.22787 0.99105 0.86859 0.96416 1.67514 1.06454 1.25810 1.16573 1.16273 0.92479 0.87704 0.98841 1.25035 0.93527 0.92089 0.94022 1.81287 1.08656 1.09834 1.07261 1.22047 1.01260 0.91765 0.97596 1.21100 0.92407 0.99578 0.96560 1.21030 0.94563 0.96706 1.02388 0.92110 0.92295 0.92347 0.87256 0.86634 0.77187 0.90369 0.90565 0.83324 0.81286 0.83350 0.85353 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.00 0.36 -0.90 16 2 C -0.12 -1.93 5.88 -104.63 -0.62 -2.54 16 3 C -0.12 -2.04 9.70 -39.58 -0.38 -2.43 16 4 C -0.16 -3.00 7.64 -39.58 -0.30 -3.30 16 5 C -0.06 -1.40 4.39 -104.62 -0.46 -1.86 16 6 C 0.03 0.69 0.70 -29.03 -0.02 0.67 16 7 O -0.81 -27.41 16.18 -55.09 -0.89 -28.30 16 8 Si 0.93 22.17 24.29 -169.99 -4.13 18.05 16 9 H -0.30 -5.79 6.38 56.52 0.36 -5.43 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.49 12.25 5.95 -10.99 -0.07 12.19 16 13 O -0.53 -15.21 16.51 -14.30 -0.24 -15.44 16 14 N -0.75 -13.75 5.09 -61.47 -0.31 -14.07 16 15 C 0.15 2.17 5.85 -5.19 -0.03 2.14 16 16 C -0.05 -0.53 5.28 -104.36 -0.55 -1.08 16 17 C -0.12 -1.13 9.82 -39.33 -0.39 -1.51 16 18 C 0.11 0.92 11.18 -17.58 -0.20 0.72 16 19 N -0.45 -4.97 10.28 -11.16 -0.11 -5.08 16 20 C 0.18 2.07 6.58 -85.07 -0.56 1.51 16 21 C 0.27 3.35 15.54 -22.44 -0.35 3.01 16 22 N -0.39 -5.53 18.54 41.88 0.78 -4.76 16 23 C -0.10 -1.09 9.50 -39.04 -0.37 -1.47 16 24 C -0.08 -1.78 9.35 -39.58 -0.37 -2.15 16 25 C -0.13 -2.36 9.70 -39.58 -0.38 -2.74 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 2.07 5.26 -52.49 -0.28 1.79 16 31 H 0.39 6.60 6.71 -40.82 -0.27 6.32 16 32 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 33 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.17 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.13 3.22 7.48 -52.48 -0.39 2.83 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -36.41 338.79 -8.48 -44.89 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.00 Total: -0.65 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -4.68 Total: 0.25 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.35 Total: -23.90 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.13 Total: -43.74 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.41 -8.48 -44.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448860068.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.679 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds