Wall clock time and date at job start Thu Mar 26 2020 19:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 119.99746 * 2 1 4 4 C 1.38235 * 120.00108 * 180.02562 * 3 2 1 5 5 C 1.38243 * 119.99617 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99586 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.46779 * 209.99512 * 6 5 4 8 8 Si 1.86295 * 109.47371 * 329.99698 * 6 5 4 9 9 H 1.48499 * 109.47090 * 60.00039 * 8 6 5 10 10 H 1.48496 * 109.47219 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47357 * 300.00496 * 8 6 5 12 12 C 1.50703 * 109.47001 * 89.99822 * 6 5 4 13 13 O 1.21280 * 119.99810 * 124.99522 * 12 6 5 14 14 N 1.34769 * 120.00194 * 304.99826 * 12 6 5 15 15 C 1.46505 * 120.00085 * 179.97438 * 14 12 6 16 16 C 1.50699 * 109.46767 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.74805 * 90.00462 * 16 15 14 18 18 C 1.38457 * 119.38363 * 179.97438 * 17 16 15 19 19 N 1.31588 * 120.91461 * 359.97438 * 18 17 16 20 20 C 1.32790 * 121.62176 * 359.97438 * 19 18 17 21 21 C 1.43200 * 119.73859 * 180.02562 * 20 19 18 22 22 N 8.94254 * 139.70590 * 243.89235 * 3 1 2 23 23 C 1.38488 * 120.74928 * 269.71995 * 16 15 14 24 24 C 1.38233 * 120.00248 * 0.25361 * 5 4 3 25 25 C 1.38234 * 120.00172 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47244 * 90.00349 * 1 2 3 27 27 H 1.09004 * 109.46985 * 210.00150 * 1 2 3 28 28 H 1.08995 * 109.47261 * 329.99927 * 1 2 3 29 29 H 1.08000 * 120.00578 * 359.97438 * 3 2 1 30 30 H 1.07999 * 120.00165 * 179.97438 * 4 3 2 31 31 H 0.97009 * 119.99870 * 0.02562 * 14 12 6 32 32 H 1.09001 * 109.47023 * 299.99667 * 15 14 12 33 33 H 1.08992 * 109.46626 * 60.00043 * 15 14 12 34 34 H 1.07997 * 120.30320 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.54435 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.47277 * 359.97438 * 23 16 15 37 37 H 1.08004 * 119.99934 * 179.72684 * 24 5 4 38 38 H 1.07999 * 120.00024 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 8 6.2545 -1.1663 -0.6772 8 14 6.3990 1.5216 -0.8808 9 1 5.9045 2.7338 -0.1800 10 1 7.8839 1.5220 -0.8814 11 1 5.9029 1.5223 -2.2805 12 6 6.2821 -0.0004 1.4177 13 8 7.0525 -0.8609 1.7876 14 7 5.8762 0.9553 2.2769 15 6 6.3652 0.9544 3.6579 16 6 5.7654 2.1184 4.4038 17 6 4.5622 1.9828 5.0806 18 6 4.0370 3.0707 5.7571 19 7 4.6635 4.2278 5.7664 20 6 5.8176 4.3998 5.1325 21 6 6.4651 5.6765 5.1696 22 7 6.9708 6.6946 5.1932 23 6 6.4059 3.3459 4.4340 24 6 3.5805 -1.1971 -0.0074 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6581 2.1325 -0.0004 30 1 4.1204 2.1326 -0.0010 31 1 5.2597 1.6434 1.9810 32 1 6.0767 0.0228 4.1449 33 1 7.4514 1.0437 3.6587 34 1 4.0404 1.0373 5.0804 35 1 3.1001 2.9682 6.2846 36 1 7.3467 3.4855 3.9222 37 1 4.1206 -2.1324 -0.0127 38 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448860068.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 19:56:08 Heat of formation + Delta-G solvation = -30.161629 kcal Electronic energy + Delta-G solvation = -24429.324619 eV Core-core repulsion = 20814.916996 eV Total energy + Delta-G solvation = -3614.407623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57211 -40.64364 -39.60809 -37.74922 -36.26672 -34.92817 -33.34511 -32.67707 -32.04785 -31.58445 -28.76077 -27.52067 -25.71099 -24.91633 -23.53469 -23.38094 -21.92765 -20.83531 -19.79984 -17.97150 -17.78490 -17.21810 -16.90635 -16.71756 -16.37407 -15.83235 -15.70790 -15.67868 -15.39045 -15.08183 -14.56363 -14.40941 -14.24854 -14.16990 -14.15072 -13.95363 -13.82962 -13.55720 -13.34065 -12.97818 -12.80114 -12.70037 -12.34101 -12.18650 -12.01008 -11.69722 -11.33122 -11.16112 -10.77027 -10.70062 -10.22449 -9.97046 -9.66536 -9.17615 -8.33830 -7.75653 -0.50838 0.01184 0.58725 0.68525 1.20701 1.32480 1.36435 1.43914 1.69288 1.95966 2.36273 2.45758 2.65836 2.90977 3.12640 3.40012 3.64754 3.83387 3.96064 4.11931 4.14574 4.18698 4.32737 4.48635 4.54866 4.56416 4.65633 4.67118 4.78144 4.82144 4.95924 4.99395 5.04735 5.14296 5.20988 5.35874 5.46692 5.48042 5.61233 5.72019 5.84845 6.09996 6.19530 6.35293 6.68079 6.68716 7.45243 7.91457 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.004809 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.003527 B = 5820.934074 C = 6772.822003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.106 4.106 3 C -0.109 4.109 4 C -0.156 4.156 5 C -0.089 4.089 6 C -0.026 4.026 7 O -0.900 6.900 8 Si 0.955 3.045 9 H -0.213 1.213 10 H -0.307 1.307 11 H -0.280 1.280 12 C 0.493 3.507 13 O -0.589 6.589 14 N -0.725 5.725 15 C 0.153 3.847 16 C -0.057 4.057 17 C -0.109 4.109 18 C 0.119 3.881 19 N -0.465 5.465 20 C 0.175 3.825 21 C 0.288 3.712 22 N -0.430 5.430 23 C -0.097 4.097 24 C -0.117 4.117 25 C -0.126 4.126 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.406 0.594 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.168 0.832 35 H 0.208 0.792 36 H 0.156 0.844 37 H 0.077 0.923 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 9.381 11.380 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.126 4.126 4 C -0.173 4.173 5 C -0.090 4.090 6 C -0.126 4.126 7 O -0.847 6.847 8 Si 0.780 3.220 9 H -0.137 1.137 10 H -0.235 1.235 11 H -0.205 1.205 12 C 0.283 3.717 13 O -0.468 6.468 14 N -0.383 5.383 15 C 0.030 3.970 16 C -0.065 4.065 17 C -0.129 4.129 18 C -0.041 4.041 19 N -0.176 5.176 20 C 0.039 3.961 21 C -0.029 4.029 22 N -0.107 5.107 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.144 4.144 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.242 0.758 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.186 0.814 35 H 0.224 0.776 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.118 11.509 11.574 20.329 hybrid contribution 0.878 -1.886 -0.802 2.229 sum -11.240 9.623 10.773 18.303 Atomic orbital electron populations 1.20753 0.88395 1.03773 1.02881 1.20215 0.97698 0.92261 1.00404 1.21265 0.92783 0.98750 0.99839 1.21320 0.95734 0.96742 1.03539 1.21022 0.97059 0.94004 0.96886 1.23372 0.91580 1.07263 0.90407 1.94986 1.83482 1.35052 1.71132 0.86184 0.77956 0.76165 0.81662 1.13734 1.23495 1.20529 1.23470 0.79436 0.79351 0.89421 1.90415 1.37838 1.39520 1.79019 1.46291 1.50063 1.31431 1.10503 1.20232 0.99086 0.96116 0.81597 1.20132 0.95633 0.93774 0.96977 1.22719 0.93958 1.02253 0.94012 1.23367 0.99746 0.85495 0.95463 1.67548 1.06385 1.27096 1.16549 1.16161 0.93000 0.87139 0.99842 1.25227 0.92718 0.92019 0.92942 1.81303 1.09819 1.10975 1.08618 1.22053 1.01398 0.91349 0.97198 1.20902 0.94535 0.97809 1.00306 1.21217 0.92535 0.99141 1.01495 0.90736 0.91072 0.89667 0.82510 0.84834 0.75788 0.90339 0.90817 0.81438 0.77554 0.82679 0.90488 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.01 71.23 0.71 -1.13 16 2 C -0.11 -2.99 5.88 -19.87 -0.12 -3.11 16 3 C -0.11 -3.04 9.70 22.27 0.22 -2.83 16 4 C -0.16 -5.53 7.64 22.27 0.17 -5.36 16 5 C -0.09 -4.19 4.39 -19.86 -0.09 -4.28 16 6 C -0.03 -1.47 0.70 29.10 0.02 -1.44 16 7 O -0.90 -66.55 16.18 -129.99 -2.10 -68.66 16 8 Si 0.96 45.28 24.29 68.60 1.67 46.95 16 9 H -0.21 -7.20 6.38 99.48 0.63 -6.56 16 10 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 12 C 0.49 25.57 5.95 87.66 0.52 26.09 16 13 O -0.59 -36.10 16.51 15.96 0.26 -35.84 16 14 N -0.73 -26.24 5.09 -466.79 -2.37 -28.61 16 15 C 0.15 4.21 5.85 85.63 0.50 4.71 16 16 C -0.06 -1.08 5.28 -19.69 -0.10 -1.19 16 17 C -0.11 -1.50 9.82 22.43 0.22 -1.28 16 18 C 0.12 1.46 11.18 84.78 0.95 2.40 16 19 N -0.46 -8.44 10.28 -189.22 -1.94 -10.39 16 20 C 0.18 3.43 6.58 40.54 0.27 3.69 16 21 C 0.29 6.61 15.54 88.32 1.37 7.98 16 22 N -0.43 -11.59 18.54 19.02 0.35 -11.23 16 23 C -0.10 -1.79 9.50 22.62 0.21 -1.57 16 24 C -0.12 -5.59 9.35 22.27 0.21 -5.38 16 25 C -0.13 -4.48 9.70 22.27 0.22 -4.27 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 28 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.13 4.13 5.26 -2.91 -0.02 4.12 16 31 H 0.41 12.55 6.71 -92.70 -0.62 11.93 16 32 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 33 H 0.07 2.11 8.10 -2.39 -0.02 2.09 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.08 4.35 7.48 -2.91 -0.02 4.33 16 38 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -91.52 338.79 2.32 -89.20 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.18 Total: 5.54 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 5.28 Total: 13.04 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -3.97 Total: -50.23 kcal Atomic # 8 Polarization: -102.66 SS G_CDS: -1.84 Total: -104.50 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.67 Total: 46.95 kcal Total: -91.52 2.32 -89.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448860068.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.042 kcal (2) G-P(sol) polarization free energy of solvation -91.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds