Wall clock time and date at job start Thu Mar 26 2020 17:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00236 * 2 1 4 4 C 1.38214 * 120.00203 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38214 * 120.00336 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.00071 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.47167 * 209.99814 * 7 6 5 9 9 Si 1.86299 * 109.47325 * 329.99739 * 7 6 5 10 10 H 1.48501 * 109.47335 * 179.97438 * 9 7 6 11 11 H 1.48497 * 109.47300 * 300.00413 * 9 7 6 12 12 H 1.48505 * 109.46922 * 60.00017 * 9 7 6 13 13 C 1.50704 * 109.47326 * 89.99939 * 7 6 5 14 14 O 1.21303 * 119.99807 * 124.99575 * 13 7 6 15 15 N 1.34769 * 119.99756 * 304.99902 * 13 7 6 16 16 C 1.40769 * 119.99825 * 179.97438 * 15 13 7 17 17 C 1.40250 * 126.07962 * 359.97261 * 16 15 13 18 18 N 1.30827 * 108.33613 * 179.77814 * 17 16 15 19 19 N 1.40074 * 108.36959 * 0.38490 * 18 17 16 20 20 C 1.46496 * 126.05680 * 179.87975 * 19 18 17 21 21 C 1.47206 * 109.47036 * 304.68538 * 20 19 18 22 22 N 9.75647 * 110.03438 * 104.98325 * 2 1 3 23 23 C 1.35748 * 126.07962 * 180.02562 * 16 15 13 24 24 C 1.38215 * 120.00228 * 180.28029 * 2 1 3 25 25 H 1.09001 * 109.47109 * 89.99809 * 1 2 3 26 26 H 1.08997 * 109.47323 * 209.99277 * 1 2 3 27 27 H 1.09002 * 109.47133 * 329.99895 * 1 2 3 28 28 H 1.08006 * 119.99733 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.00063 * 180.02562 * 4 3 2 30 30 H 1.08005 * 119.99761 * 179.97438 * 5 4 3 31 31 H 0.97005 * 120.00231 * 0.02562 * 15 13 7 32 32 H 1.08006 * 125.83347 * 359.97438 * 17 16 15 33 33 H 1.09001 * 109.47001 * 184.68758 * 20 19 18 34 34 H 1.08996 * 109.46915 * 64.68658 * 20 19 18 35 35 H 1.08007 * 126.22546 * 359.97438 * 23 16 15 36 36 H 1.08001 * 119.99942 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0011 8 8 3.5621 -3.4976 -0.6757 9 14 5.9623 -2.2788 -0.8786 10 1 6.7051 -3.5647 -0.8787 11 1 5.7153 -1.8491 -2.2785 12 1 6.7646 -1.2442 -0.1776 13 6 4.5848 -2.9381 1.4195 14 8 4.2245 -4.0357 1.7896 15 7 5.2092 -2.1085 2.2787 16 6 5.4429 -2.5156 3.6059 17 6 5.0817 -3.7491 4.1672 18 7 5.4681 -3.7614 5.4171 19 7 6.0813 -2.5346 5.7017 20 6 6.6529 -2.1346 6.9898 21 6 5.6321 -2.2678 8.0421 22 7 4.8494 -2.3698 8.8544 23 6 6.0569 -1.7837 4.5702 24 6 2.1981 -1.1969 -0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1326 0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 0.0000 0.0005 31 1 5.4969 -1.2307 1.9829 32 1 4.5744 -4.5529 3.6543 33 1 6.9841 -1.0976 6.9341 34 1 7.5027 -2.7754 7.2248 35 1 6.4542 -0.7856 4.4582 36 1 1.6581 -2.1323 -0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464514755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 17:01:46 Heat of formation + Delta-G solvation = 50.020125 kcal Electronic energy + Delta-G solvation = -23280.414711 eV Core-core repulsion = 19732.284259 eV Total energy + Delta-G solvation = -3548.130452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03958 -38.98800 -37.96409 -36.91997 -34.04541 -33.18721 -32.59341 -31.53342 -29.33072 -28.81182 -27.25750 -26.36493 -24.30303 -21.79807 -21.44044 -20.83426 -20.17544 -18.86534 -17.99358 -17.01891 -16.16396 -15.72036 -15.55938 -15.00386 -14.87537 -14.25904 -14.09339 -13.95211 -13.47186 -13.37373 -13.23717 -12.96598 -12.78343 -12.62663 -12.51690 -12.42582 -12.16687 -11.93165 -11.74878 -11.26067 -10.63277 -10.57656 -10.41494 -10.34835 -10.14919 -9.85837 -9.59470 -9.25700 -8.89393 -7.96983 -7.75647 -7.24831 -6.08998 -5.56415 1.81685 1.99947 2.07233 2.22214 2.49090 3.02748 3.05667 3.15273 3.29025 3.39045 3.56397 3.92107 4.02686 4.46848 4.53120 4.66607 4.81978 4.96544 5.41007 5.42743 5.52253 5.71968 5.75158 5.79697 5.90336 6.00652 6.04631 6.21529 6.40583 6.46589 6.62812 6.73781 6.86622 6.91119 7.00611 7.17249 7.21684 7.37825 7.48009 7.65073 7.84338 7.87889 8.34486 9.26423 9.84313 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.004788 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.612994 B = 5846.835277 C = 6579.036074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.121 4.121 5 C -0.164 4.164 6 C -0.057 4.057 7 C 0.027 3.973 8 O -0.805 6.805 9 Si 0.934 3.066 10 H -0.277 1.277 11 H -0.268 1.268 12 H -0.294 1.294 13 C 0.492 3.508 14 O -0.519 6.519 15 N -0.662 5.662 16 C 0.038 3.962 17 C 0.060 3.940 18 N -0.287 5.287 19 N -0.394 5.394 20 C 0.250 3.750 21 C 0.194 3.806 22 N -0.406 5.406 23 C -0.009 4.009 24 C -0.079 4.079 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.403 0.597 32 H 0.210 0.790 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.178 0.822 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 11.172 7.730 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.101 4.101 3 C -0.164 4.164 4 C -0.139 4.139 5 C -0.182 4.182 6 C -0.058 4.058 7 C -0.077 4.077 8 O -0.748 6.748 9 Si 0.762 3.238 10 H -0.202 1.202 11 H -0.192 1.192 12 H -0.224 1.224 13 C 0.283 3.717 14 O -0.392 6.392 15 N -0.312 5.312 16 C -0.067 4.067 17 C -0.129 4.129 18 N -0.108 5.108 19 N -0.183 5.183 20 C 0.125 3.875 21 C -0.126 4.126 22 N -0.083 5.083 23 C -0.154 4.154 24 C -0.097 4.097 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.238 0.762 32 H 0.226 0.774 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.195 0.805 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.891 9.446 9.684 14.755 hybrid contribution 0.287 1.153 -1.076 1.603 sum 6.178 10.599 8.608 14.987 Atomic orbital electron populations 1.20717 0.92161 1.01918 1.01675 1.19965 0.95507 0.93587 1.01017 1.20756 0.94206 0.96685 1.04733 1.20872 0.94148 0.97158 1.01742 1.21225 0.99667 0.92778 1.04559 1.21417 0.95208 0.96057 0.93149 1.22606 1.03446 0.92913 0.88764 1.95104 1.64074 1.47549 1.68049 0.86532 0.78057 0.76790 0.82430 1.20217 1.19236 1.22394 1.24224 0.74080 0.84448 0.88947 1.90328 1.49342 1.22159 1.77377 1.44024 1.60259 1.20054 1.06912 1.18153 1.05342 0.95560 0.87693 1.24742 0.99316 0.98584 0.90252 1.77382 1.15778 1.00656 1.16974 1.47828 1.50063 1.12676 1.07747 1.18741 0.89943 1.04105 0.74712 1.29054 0.95080 0.93799 0.94682 1.81059 1.08294 1.07943 1.10987 1.21779 1.08248 0.98949 0.86380 1.21001 0.94346 0.97068 0.97263 0.91781 0.91817 0.92424 0.87394 0.87121 0.86518 0.76185 0.77420 0.84426 0.85673 0.80492 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 36.00 0.36 -1.27 16 2 C -0.10 -1.89 5.88 -104.63 -0.62 -2.51 16 3 C -0.15 -2.44 9.70 -39.58 -0.38 -2.82 16 4 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 5 C -0.16 -3.14 7.64 -39.58 -0.30 -3.45 16 6 C -0.06 -1.34 4.39 -104.63 -0.46 -1.80 16 7 C 0.03 0.71 0.70 -29.04 -0.02 0.69 16 8 O -0.80 -27.13 16.18 -55.09 -0.89 -28.02 16 9 Si 0.93 21.86 24.29 -169.99 -4.13 17.73 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -5.54 6.38 56.52 0.36 -5.18 16 13 C 0.49 12.46 5.92 -10.99 -0.07 12.39 16 14 O -0.52 -14.74 13.66 -14.32 -0.20 -14.94 16 15 N -0.66 -13.13 5.01 -10.04 -0.05 -13.18 16 16 C 0.04 0.68 6.90 -83.88 -0.58 0.10 16 17 C 0.06 1.16 10.84 -17.22 -0.19 0.97 16 18 N -0.29 -4.93 12.39 30.70 0.38 -4.55 16 19 N -0.39 -4.99 3.68 -63.90 -0.23 -5.22 16 20 C 0.25 1.76 6.99 -6.83 -0.05 1.72 16 21 C 0.19 2.13 15.60 -20.87 -0.33 1.80 16 22 N -0.41 -5.78 18.52 42.03 0.78 -5.00 16 23 C -0.01 -0.12 11.52 -16.68 -0.19 -0.31 16 24 C -0.08 -1.82 9.01 -39.58 -0.36 -2.18 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 27 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 2.00 5.26 -52.48 -0.28 1.73 16 31 H 0.40 6.83 7.07 -40.82 -0.29 6.54 16 32 H 0.21 4.50 5.92 -52.48 -0.31 4.19 16 33 H 0.14 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.13 3.30 7.48 -52.49 -0.39 2.91 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -38.59 319.90 -6.57 -45.16 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.48 Total: 2.25 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -3.57 Total: 0.94 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.87 Total: -27.95 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.09 Total: -42.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.13 Total: 17.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -38.59 -6.57 -45.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464514755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.181 kcal (2) G-P(sol) polarization free energy of solvation -38.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds