Wall clock time and date at job start Thu Mar 26 2020 21:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.96996 * 2 1 4 4 C 1.38173 * 120.02278 * 179.97438 * 3 2 1 5 5 C 1.38485 * 119.97418 * 0.02562 * 4 3 2 6 6 F 1.35102 * 120.02319 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.95182 * 359.70505 * 5 4 3 8 8 C 1.38219 * 119.96963 * 0.54669 * 7 5 4 9 9 C 1.50703 * 119.98894 * 179.74846 * 8 7 5 10 10 O 1.42896 * 109.47131 * 248.59597 * 9 8 7 11 11 Si 1.86296 * 109.47128 * 128.59215 * 9 8 7 12 12 H 1.48496 * 109.47427 * 332.63861 * 11 9 8 13 13 H 1.48506 * 109.47110 * 92.63939 * 11 9 8 14 14 H 1.48503 * 109.47197 * 212.63784 * 11 9 8 15 15 C 1.50704 * 109.46642 * 8.59436 * 9 8 7 16 16 O 1.21283 * 119.99787 * 239.06282 * 15 9 8 17 17 N 1.34775 * 120.00137 * 59.06643 * 15 9 8 18 18 C 1.46499 * 120.00078 * 5.23204 * 17 15 9 19 19 C 1.39576 * 120.00244 * 185.23815 * 17 15 9 20 20 C 1.39397 * 120.38351 * 172.58462 * 19 17 15 21 21 C 1.38247 * 118.44878 * 179.72173 * 20 19 17 22 22 C 1.39587 * 119.13467 * 0.24839 * 21 20 19 23 23 C 1.43209 * 119.65379 * 179.97438 * 22 21 20 24 24 N 9.40065 * 111.58177 * 273.75614 * 5 1 2 25 25 N 1.32851 * 120.69152 * 0.02562 * 22 21 20 26 26 C 1.31446 * 121.68455 * 359.97438 * 25 22 21 27 27 H 1.08996 * 109.46672 * 274.53628 * 1 2 3 28 28 H 1.08996 * 109.47638 * 34.54575 * 1 2 3 29 29 H 1.09003 * 109.46894 * 154.54494 * 1 2 3 30 30 H 1.07997 * 119.99243 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.01678 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.01257 * 180.29646 * 7 5 4 33 33 H 1.09004 * 109.47353 * 274.91798 * 18 17 15 34 34 H 1.09010 * 109.47240 * 34.91438 * 18 17 15 35 35 H 1.08994 * 109.47441 * 154.91475 * 18 17 15 36 36 H 1.07995 * 120.77519 * 359.97438 * 20 19 17 37 37 H 1.08003 * 120.42627 * 180.27582 * 21 20 19 38 38 H 1.08008 * 119.59855 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5795 1.1991 0.0005 5 6 4.2724 0.0001 0.0005 6 9 5.6235 0.0002 0.0016 7 6 3.5798 -1.1986 0.0062 8 6 2.1977 -1.1974 0.0004 9 6 1.4433 -2.5020 0.0008 10 8 0.7845 -2.6716 -1.2559 11 14 0.1782 -2.4874 1.3683 12 1 0.6374 -1.5890 2.4579 13 1 -1.1194 -1.9980 0.8370 14 1 0.0081 -3.8635 1.9000 15 6 2.4072 -3.6395 0.2203 16 8 2.5065 -4.5187 -0.6092 17 7 3.1587 -3.6797 1.3383 18 6 2.9578 -2.6822 2.3923 19 6 4.1286 -4.6716 1.4920 20 6 5.0130 -4.6321 2.5687 21 6 5.9540 -5.6382 2.6853 22 6 5.9898 -6.6499 1.7243 23 6 6.9604 -7.6972 1.8339 24 7 7.7292 -0.5725 8.7238 25 7 5.1337 -6.6508 0.7084 26 6 4.2272 -5.7092 0.5687 27 1 -0.3632 0.0813 1.0244 28 1 -0.3634 0.8464 -0.5827 29 1 -0.3633 -0.9279 -0.4417 30 1 1.6571 2.1327 0.0004 31 1 4.1189 2.1347 0.0010 32 1 4.1193 -2.1341 0.0110 33 1 3.5374 -1.7883 2.1619 34 1 1.9003 -2.4242 2.4516 35 1 3.2860 -3.0918 3.3475 36 1 4.9616 -3.8365 3.2972 37 1 6.6520 -5.6414 3.5095 38 1 3.5475 -5.7433 -0.2701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461303278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 21:38:56 Heat of formation + Delta-G solvation = 379.639056 kcal Electronic energy + Delta-G solvation = -27556.295095 eV Core-core repulsion = 23490.203787 eV Total energy + Delta-G solvation = -4066.091308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.101 amu Computer time = 29.34 seconds Orbital eigenvalues (eV) -49.86662 -41.77657 -40.21740 -39.20536 -36.65806 -34.57337 -33.23164 -32.50654 -31.44468 -31.03343 -28.68454 -28.18010 -27.81751 -26.60534 -24.70480 -23.99693 -23.25342 -21.99591 -20.23305 -20.06112 -18.50144 -18.24368 -17.93556 -17.11263 -16.73194 -16.60280 -16.21147 -16.03652 -15.57364 -15.25213 -15.06102 -14.66283 -14.60356 -14.56867 -14.43497 -14.12281 -14.08919 -13.88047 -13.70663 -13.45383 -13.23394 -13.03324 -12.89735 -12.43317 -12.16131 -12.02260 -11.56668 -11.41074 -11.06296 -10.79566 -10.33077 -10.07947 -9.72639 -9.70246 -9.26558 -9.14705 -8.35720 -7.86533 -6.30604 -5.09841 -5.09362 0.25671 0.42474 0.79459 0.84027 0.98208 1.03690 1.28641 1.41820 1.97615 2.28086 2.49570 2.74747 3.38505 3.41353 3.87456 3.98976 4.02318 4.08373 4.13565 4.16266 4.37743 4.43591 4.46253 4.54005 4.59194 4.65392 4.79929 4.82290 4.85728 5.09525 5.11892 5.15458 5.25595 5.29802 5.44289 5.54944 5.58241 5.68751 5.91289 6.03088 6.12069 6.60085 6.72200 7.37229 7.74455 7.88155 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.005128 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.426590 B = 5458.485633 C = 7107.127679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.072 4.072 4 C -0.149 4.149 5 C 0.075 3.925 6 F -0.152 7.152 7 C -0.181 4.181 8 C -0.048 4.048 9 C -0.030 4.030 10 O -0.884 6.884 11 Si 0.979 3.021 12 H -0.186 1.186 13 H -0.263 1.263 14 H -0.318 1.318 15 C 0.456 3.544 16 O -0.589 6.589 17 N -0.539 5.539 18 C 0.056 3.944 19 C -0.112 4.112 20 C -0.041 4.041 21 C -0.305 4.305 22 C -0.063 4.063 23 C -0.225 4.225 24 N 1.000 4.000 25 N -0.626 5.626 26 C 0.084 3.916 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.183 0.817 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.129 0.871 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.163 36.854 50.106 64.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.089 4.089 4 C -0.167 4.167 5 C 0.056 3.944 6 F -0.131 7.131 7 C -0.201 4.201 8 C -0.049 4.049 9 C -0.127 4.127 10 O -0.830 6.830 11 Si 0.804 3.196 12 H -0.111 1.111 13 H -0.189 1.189 14 H -0.247 1.247 15 C 0.251 3.749 16 O -0.471 6.471 17 N -0.267 5.267 18 C -0.084 4.084 19 C -0.208 4.208 20 C -0.066 4.066 21 C -0.327 4.327 22 C -0.175 4.175 23 C -0.234 4.234 24 N 1.000 4.000 25 N -0.345 5.345 26 C -0.081 4.081 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.200 0.800 31 H 0.194 0.806 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.179 0.821 37 H 0.146 0.854 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.553 35.847 49.499 63.318 hybrid contribution -0.229 -0.040 -1.001 1.028 sum 16.325 35.807 48.497 62.455 Atomic orbital electron populations 1.21232 0.91015 1.04546 1.03181 1.19957 0.97207 0.92074 1.01115 1.21255 0.92901 0.97657 0.97084 1.21276 0.94879 0.96069 1.04471 1.17853 0.76257 0.94820 1.05426 1.91410 1.29754 1.97515 1.94391 1.21030 0.95073 0.96972 1.07014 1.20705 0.92676 0.97670 0.93834 1.23795 0.95340 0.86313 1.07253 1.94988 1.72657 1.90238 1.25166 0.86511 0.81169 0.77592 0.74302 1.11140 1.18949 1.24687 1.24445 0.81243 0.89943 0.79315 1.90026 1.68239 1.41509 1.47344 1.45353 1.33905 1.28191 1.19234 1.22592 1.02816 0.92050 0.90979 1.18330 1.01491 0.97019 1.03937 1.20828 0.92509 0.97876 0.95341 1.20602 1.07653 1.00073 1.04370 1.22894 0.99343 1.01139 0.94171 1.81621 1.06333 0.90519 0.44966 1.99997 0.68946 0.66858 0.64199 1.68178 1.10800 1.29724 1.25837 1.24245 0.95238 0.90004 0.98594 0.89066 0.88200 0.92633 0.79956 0.80567 0.89935 0.90473 0.91280 0.87814 0.82124 0.85353 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 587. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 7.73 71.24 0.55 -5.37 16 2 C -0.10 -4.55 5.52 -19.86 -0.11 -4.66 16 3 C -0.07 -2.26 9.72 22.26 0.22 -2.04 16 4 C -0.15 -4.67 10.03 22.31 0.22 -4.45 16 5 C 0.08 3.21 7.30 22.38 0.16 3.37 16 6 F -0.15 -6.27 17.27 44.97 0.78 -5.50 16 7 C -0.18 -9.84 6.46 22.31 0.14 -9.69 16 8 C -0.05 -2.65 3.79 -19.87 -0.08 -2.73 16 9 C -0.03 -1.99 0.59 29.10 0.02 -1.97 16 10 O -0.88 -73.06 15.98 -129.94 -2.08 -75.14 16 11 Si 0.98 52.51 18.89 68.60 1.30 53.80 16 12 H -0.19 -7.07 6.15 99.48 0.61 -6.46 16 13 H -0.26 -13.62 6.11 99.48 0.61 -13.02 16 14 H -0.32 -18.61 7.11 99.48 0.71 -17.90 16 15 C 0.46 33.39 4.60 87.66 0.40 33.79 16 16 O -0.59 -50.24 12.92 16.00 0.21 -50.04 16 17 N -0.54 -33.72 2.03 -654.04 -1.33 -35.04 16 18 C 0.06 2.53 8.14 127.77 1.04 3.57 16 19 C -0.11 -7.51 6.51 38.43 0.25 -7.26 16 20 C -0.04 -2.28 9.24 22.55 0.21 -2.07 16 21 C -0.31 -18.38 9.79 22.60 0.22 -18.16 16 22 C -0.06 -4.53 6.59 40.56 0.27 -4.26 16 23 C -0.22 -15.00 25.33 69.07 1.75 -13.25 16 24 N 1.00 -55.95 30.19 37.02 1.12 -54.84 16 25 N -0.63 -49.36 10.27 -188.53 -1.94 -51.30 16 26 C 0.08 6.56 10.22 84.99 0.87 7.43 16 27 H 0.09 3.05 6.78 -2.39 -0.02 3.03 16 28 H 0.10 3.26 8.11 -2.39 -0.02 3.24 16 29 H 0.05 2.99 4.06 -2.39 -0.01 2.98 16 30 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 32 H 0.08 5.28 5.81 -2.91 -0.02 5.26 16 33 H 0.08 3.17 5.86 -2.38 -0.01 3.15 16 34 H 0.07 3.05 1.96 -2.38 0.00 3.05 16 35 H 0.10 3.70 6.29 -2.39 -0.02 3.69 16 36 H 0.16 6.63 6.37 -2.91 -0.02 6.61 16 37 H 0.13 6.45 8.06 -2.91 -0.02 6.43 16 38 H 0.15 12.71 4.54 -60.25 -0.27 12.44 16 Total: -1.00 -231.66 332.39 5.67 -225.99 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.47 Total: 19.81 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 6.14 Total: -27.76 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -2.14 Total: -141.18 kcal Atomic # 8 Polarization: -123.30 SS G_CDS: -1.87 Total: -125.17 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.78 Total: -5.50 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 1.30 Total: 53.80 kcal Total: -231.66 5.67 -225.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461303278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 605.631 kcal (2) G-P(sol) polarization free energy of solvation -231.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 373.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -225.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 379.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.34 seconds