Wall clock time and date at job start Thu Mar 26 2020 19:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38249 * 120.00201 * 2 1 4 4 C 1.38208 * 120.00280 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00005 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99890 * 359.95510 * 5 4 3 7 7 C 1.50699 * 119.99918 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.47099 * 210.00192 * 7 6 5 9 9 Si 1.86302 * 109.47252 * 330.00088 * 7 6 5 10 10 H 1.48505 * 109.47218 * 179.97438 * 9 7 6 11 11 H 1.48500 * 109.47256 * 300.00058 * 9 7 6 12 12 H 1.48495 * 109.47069 * 59.99986 * 9 7 6 13 13 C 1.50695 * 109.47102 * 90.00136 * 7 6 5 14 14 O 1.21288 * 120.00047 * 125.00126 * 13 7 6 15 15 N 1.34778 * 120.00026 * 304.99678 * 13 7 6 16 16 C 1.39544 * 119.99791 * 184.59201 * 15 13 7 17 17 C 1.39100 * 119.92238 * 324.61584 * 16 15 13 18 18 C 1.37704 * 120.07969 * 179.72311 * 17 16 15 19 19 C 1.39774 * 119.91727 * 0.57591 * 18 17 16 20 20 C 1.43194 * 120.07897 * 179.68147 * 19 18 17 21 21 N 9.79499 * 104.64757 * 200.64304 * 5 1 2 22 22 C 1.39775 * 119.83943 * 359.69523 * 19 18 17 23 23 C 1.37689 * 119.92205 * 0.02562 * 22 19 18 24 24 C 1.38218 * 119.99651 * 180.21458 * 2 1 3 25 25 H 1.09002 * 109.47667 * 89.99804 * 1 2 3 26 26 H 1.09003 * 109.47410 * 209.99741 * 1 2 3 27 27 H 1.09005 * 109.47259 * 329.99715 * 1 2 3 28 28 H 1.08005 * 119.99933 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.00065 * 179.97438 * 4 3 2 30 30 H 1.08002 * 120.00178 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00374 * 4.59064 * 15 13 7 32 32 H 1.07996 * 119.96110 * 359.97438 * 17 16 15 33 33 H 1.07994 * 120.03698 * 180.27001 * 18 17 16 34 34 H 1.08000 * 120.03736 * 179.97438 * 22 19 18 35 35 H 1.07999 * 119.96444 * 179.97438 * 23 22 19 36 36 H 1.07998 * 120.00532 * 0.04302 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5805 -1.1970 0.0009 7 6 4.3340 -2.5021 0.0015 8 8 3.5618 -3.4983 -0.6719 9 14 5.9620 -2.2797 -0.8766 10 1 6.7048 -3.5656 -0.8755 11 1 5.7147 -1.8515 -2.2769 12 1 6.7645 -1.2445 -0.1769 13 6 4.5850 -2.9366 1.4225 14 8 4.2250 -4.0336 1.7938 15 7 5.2097 -2.1061 2.2807 16 6 5.5278 -2.5428 3.5674 17 6 4.6708 -3.4093 4.2377 18 6 4.9843 -3.8468 5.5052 19 6 6.1595 -3.4095 6.1228 20 6 6.4855 -3.8568 7.4434 21 7 6.7482 8.8682 3.3418 22 6 7.0155 -2.5343 5.4483 23 6 6.6984 -2.1056 4.1789 24 6 2.1980 -1.1970 -0.0045 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0001 30 1 5.3516 0.0000 0.0005 31 1 5.4382 -1.2049 2.0041 32 1 3.7603 -3.7426 3.7620 33 1 4.3205 -4.5230 6.0233 34 1 7.9241 -2.1941 5.9226 35 1 7.3591 -1.4290 3.6572 36 1 1.6580 -2.1323 -0.0087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524223989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 19:32:24 Heat of formation + Delta-G solvation = 346.156605 kcal Electronic energy + Delta-G solvation = -21878.973655 eV Core-core repulsion = 18501.847945 eV Total energy + Delta-G solvation = -3377.125710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.97123 -39.95679 -38.86111 -36.14685 -33.89710 -33.01900 -32.44362 -32.05600 -29.48826 -27.27722 -26.62997 -24.83691 -24.71558 -22.28639 -21.70052 -21.13946 -20.11620 -18.98974 -17.81176 -17.55450 -16.82187 -16.34413 -16.27878 -15.72181 -15.52489 -15.23991 -15.08718 -14.73551 -14.38435 -14.19526 -13.68351 -13.46104 -13.19105 -12.98728 -12.92176 -12.68400 -12.20766 -12.07724 -11.81775 -11.22856 -11.15981 -11.01828 -10.90429 -10.58159 -10.28962 -10.19012 -9.88432 -8.44810 -8.35272 -6.97352 -6.45861 -3.42503 -3.42411 -2.78590 -2.26282 -0.33801 -0.27190 1.50996 1.67195 1.75631 1.94135 2.19981 2.33992 2.49898 2.75808 2.79868 2.80877 2.88239 3.26288 3.34867 3.56193 3.86751 3.93460 4.05648 4.16874 4.34070 4.64539 4.90961 5.05472 5.13052 5.20800 5.37051 5.37348 5.44344 5.58852 5.70118 5.78956 5.97115 6.03104 6.08118 6.35287 6.44005 6.53046 6.73394 6.88086 7.05438 7.34387 7.67234 8.85831 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.006876 B = 0.005200 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4070.930621 B = 5382.853826 C = 7646.116916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.113 4.113 5 C -0.169 4.169 6 C -0.078 4.078 7 C 0.025 3.975 8 O -0.783 6.783 9 Si 0.938 3.062 10 H -0.274 1.274 11 H -0.251 1.251 12 H -0.289 1.289 13 C 0.480 3.520 14 O -0.479 6.479 15 N -0.651 5.651 16 C 0.335 3.665 17 C -0.160 4.160 18 C 0.031 3.969 19 C -0.435 4.435 20 C 0.651 3.349 21 N -1.000 6.000 22 C 0.040 3.960 23 C -0.186 4.186 24 C -0.080 4.080 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.430 0.570 32 H 0.180 0.820 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -46.509 18.505 50.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.131 4.131 5 C -0.187 4.187 6 C -0.079 4.079 7 C -0.079 4.079 8 O -0.724 6.724 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.174 1.174 12 H -0.218 1.218 13 C 0.273 3.727 14 O -0.349 6.349 15 N -0.290 5.290 16 C 0.222 3.778 17 C -0.180 4.180 18 C 0.011 3.989 19 C -0.436 4.436 20 C 0.649 3.351 21 N -1.000 6.000 22 C 0.020 3.980 23 C -0.206 4.206 24 C -0.098 4.098 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.271 0.729 32 H 0.197 0.803 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.710 -47.390 17.691 50.590 hybrid contribution -0.368 1.016 -1.436 1.797 sum -1.078 -46.374 16.255 49.152 Atomic orbital electron populations 1.20756 0.91673 1.02167 1.02168 1.20039 0.95878 0.93399 1.00247 1.20971 0.94314 0.97245 1.02605 1.21059 0.94358 0.97634 1.00081 1.21238 0.99679 0.92803 1.04941 1.21117 0.95281 0.95071 0.96477 1.22952 1.04800 0.93717 0.86398 1.95182 1.64345 1.47064 1.65800 0.86441 0.76045 0.76932 0.84309 1.19878 1.17416 1.21850 1.26428 0.72465 0.84387 0.89402 1.90503 1.45488 1.21685 1.77227 1.46418 1.54954 1.18902 1.08752 1.19607 0.88457 0.85297 0.84440 1.21970 1.02502 0.99604 0.93885 1.21494 0.91264 0.92289 0.93844 1.22522 1.03739 1.12079 1.05213 1.83841 0.20856 0.39050 0.91374 2.00000 1.30587 1.34868 1.34545 1.21389 0.96418 0.87622 0.92576 1.21590 0.96846 1.05475 0.96704 1.20960 0.93986 0.97244 0.97652 0.91362 0.91836 0.91914 0.86493 0.86095 0.86400 0.72913 0.80291 0.81819 0.81605 0.81267 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.00 0.36 -0.97 16 2 C -0.10 -1.45 5.88 -104.63 -0.62 -2.07 16 3 C -0.13 -1.91 9.70 -39.59 -0.38 -2.30 16 4 C -0.11 -1.62 10.05 -39.59 -0.40 -2.01 16 5 C -0.17 -2.53 7.58 -39.58 -0.30 -2.83 16 6 C -0.08 -1.40 4.37 -104.62 -0.46 -1.85 16 7 C 0.03 0.50 0.70 -29.04 -0.02 0.48 16 8 O -0.78 -21.17 16.18 -55.09 -0.89 -22.06 16 9 Si 0.94 16.45 24.37 -169.99 -4.14 12.30 16 10 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 11 H -0.25 -4.82 7.11 56.52 0.40 -4.42 16 12 H -0.29 -3.78 6.38 56.52 0.36 -3.42 16 13 C 0.48 7.52 5.78 -10.99 -0.06 7.46 16 14 O -0.48 -8.52 13.94 -14.31 -0.20 -8.72 16 15 N -0.65 -6.03 4.83 -9.84 -0.05 -6.08 16 16 C 0.34 1.53 6.29 -83.70 -0.53 1.00 16 17 C -0.16 -0.55 8.67 -39.46 -0.34 -0.89 16 18 C 0.03 -0.08 9.75 -39.20 -0.38 -0.46 16 19 C -0.43 2.48 5.74 -106.83 -0.61 1.86 16 20 C 0.65 -7.52 25.13 32.65 0.82 -6.70 16 21 N -1.00 -43.75 30.19 60.35 1.82 -41.93 16 22 C 0.04 -0.16 9.75 -39.21 -0.38 -0.54 16 23 C -0.19 -0.04 9.94 -39.46 -0.39 -0.43 16 24 C -0.08 -1.45 9.00 -39.58 -0.36 -1.80 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.12 1.51 5.28 -52.49 -0.28 1.24 16 31 H 0.43 3.33 7.09 -40.82 -0.29 3.04 16 32 H 0.18 1.19 6.23 -52.49 -0.33 0.87 16 33 H 0.16 -0.93 8.06 -52.49 -0.42 -1.35 16 34 H 0.17 -1.26 8.06 -52.49 -0.42 -1.68 16 35 H 0.17 -0.17 8.06 -52.49 -0.42 -0.59 16 36 H 0.13 2.57 7.48 -52.49 -0.39 2.18 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -73.27 339.13 -5.90 -79.17 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -3.50 Total: -5.75 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -4.05 Total: -12.04 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.77 Total: -48.01 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.09 Total: -30.77 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -4.14 Total: 12.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -73.27 -5.90 -79.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524223989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 425.326 kcal (2) G-P(sol) polarization free energy of solvation -73.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 352.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 346.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds