Wall clock time and date at job start Thu Mar 26 2020 18:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00213 * 2 1 4 4 C 1.38211 * 119.99788 * 180.28358 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.50701 * 120.00231 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.46650 * 30.00116 * 7 6 5 9 9 Si 1.86304 * 109.47040 * 149.99849 * 7 6 5 10 10 H 1.48503 * 109.46934 * 59.99975 * 9 7 6 11 11 H 1.48499 * 109.46971 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47280 * 300.00062 * 9 7 6 13 13 C 1.50696 * 109.47037 * 270.00159 * 7 6 5 14 14 O 1.21281 * 120.00144 * 125.00309 * 13 7 6 15 15 N 1.34776 * 119.99928 * 304.99313 * 13 7 6 16 16 C 1.46499 * 119.99996 * 180.02562 * 15 13 7 17 17 H 1.09005 * 109.47305 * 325.00112 * 16 15 13 18 18 C 1.52997 * 109.47291 * 85.00426 * 16 15 13 19 19 C 1.50702 * 109.47105 * 205.00785 * 16 15 13 20 20 C 1.38386 * 119.92381 * 319.72190 * 19 16 15 21 21 C 1.38335 * 120.30523 * 179.77054 * 20 19 16 22 22 C 1.37972 * 120.15591 * 0.50991 * 21 20 19 23 23 C 1.39619 * 119.83923 * 359.74490 * 22 21 20 24 24 C 1.43199 * 120.14686 * 179.97438 * 23 22 21 25 25 N 9.08365 * 96.06555 * 262.62090 * 2 1 3 26 26 C 1.37932 * 119.92572 * 140.00191 * 19 16 15 27 27 C 1.38212 * 119.99687 * 179.72372 * 2 1 3 28 28 H 1.08998 * 109.46800 * 270.28143 * 1 2 3 29 29 H 1.09007 * 109.47085 * 30.27480 * 1 2 3 30 30 H 1.08997 * 109.47544 * 150.28187 * 1 2 3 31 31 H 1.07998 * 119.99812 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00200 * 179.74545 * 4 3 2 33 33 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 34 34 H 0.97003 * 120.00317 * 0.02562 * 15 13 7 35 35 H 1.08998 * 109.47064 * 299.99972 * 18 16 15 36 36 H 1.08994 * 109.46945 * 60.00069 * 18 16 15 37 37 H 1.09001 * 109.47256 * 180.02562 * 18 16 15 38 38 H 1.08002 * 119.84311 * 0.02562 * 20 19 16 39 39 H 1.08005 * 119.92868 * 180.25703 * 21 20 19 40 40 H 1.07991 * 120.08021 * 179.72601 * 22 21 20 41 41 H 1.07995 * 120.07647 * 359.97438 * 26 19 16 42 42 H 1.08001 * 120.00342 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0059 5 6 4.2717 -0.0001 -0.0006 6 6 3.5806 -1.1971 0.0052 7 6 4.3340 -2.5022 0.0117 8 8 5.5826 -2.3280 0.6846 9 14 3.3270 -3.7962 0.8962 10 1 2.0295 -3.9771 0.1969 11 1 4.0698 -5.0821 0.9031 12 1 3.0795 -3.3607 2.2941 13 6 4.5853 -2.9441 -1.4069 14 8 5.7155 -3.1828 -1.7766 15 7 3.5541 -3.0743 -2.2649 16 6 3.7983 -3.5045 -3.6438 17 1 4.7490 -3.0976 -3.9885 18 6 3.8471 -5.0327 -3.7003 19 6 2.6870 -3.0043 -4.5303 20 6 1.3786 -3.0342 -4.0806 21 6 0.3529 -2.5726 -4.8860 22 6 0.6273 -2.0885 -6.1485 23 6 1.9445 -2.0603 -6.6106 24 6 2.2367 -1.5597 -7.9201 25 7 2.4668 -1.1601 -8.9580 26 6 2.9756 -2.5229 -5.7903 27 6 2.1980 -1.1970 0.0058 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8925 -0.5094 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 -0.0101 33 1 5.3517 -0.0002 -0.0005 34 1 2.6501 -2.8832 -1.9693 35 1 4.6509 -5.3944 -3.0591 36 1 2.8965 -5.4395 -3.3558 37 1 4.0293 -5.3527 -4.7262 38 1 1.1577 -3.4160 -3.0948 39 1 -0.6656 -2.5950 -4.5273 40 1 -0.1749 -1.7326 -6.7779 41 1 3.9967 -2.5039 -6.1416 42 1 1.6580 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133725602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 18:41:40 Heat of formation + Delta-G solvation = -20.701520 kcal Electronic energy + Delta-G solvation = -26902.840372 eV Core-core repulsion = 23198.731262 eV Total energy + Delta-G solvation = -3704.109110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.03016 -38.91494 -37.96814 -36.64605 -34.85933 -32.96588 -31.69672 -31.45671 -30.98170 -29.11097 -29.01364 -26.18827 -24.73881 -24.26035 -23.21862 -21.65163 -21.15634 -20.34342 -18.77608 -18.23122 -16.52237 -16.15350 -15.80070 -15.49882 -14.93510 -14.82062 -14.41421 -14.29187 -14.19323 -13.73502 -13.57329 -13.32134 -13.29104 -13.16987 -12.89651 -12.80632 -12.60670 -12.48122 -12.19313 -12.10004 -11.90279 -11.69504 -11.57369 -11.37089 -11.19332 -10.76462 -10.54063 -10.37891 -10.28083 -9.87100 -9.56175 -9.14811 -9.02643 -8.80975 -8.26218 -8.01193 -7.64629 -6.01273 -5.49047 0.60689 1.12393 2.13656 2.21269 2.49173 2.78631 3.15125 3.29550 3.37945 3.64460 3.70973 3.88217 4.12883 4.48215 4.56616 4.66963 4.69946 4.86637 5.06819 5.24708 5.36951 5.38662 5.43460 5.58101 5.65445 5.71089 5.72267 5.80656 5.87965 5.89083 6.06594 6.07621 6.10140 6.13552 6.17022 6.34770 6.39617 6.44649 6.51359 6.63396 6.78019 6.87783 6.92606 7.25638 7.30041 7.32087 7.38501 7.71358 7.91121 8.46300 9.39681 9.94530 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.004940 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.423428 B = 5666.728427 C = 6667.521775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.086 4.086 6 C -0.053 4.053 7 C 0.025 3.975 8 O -0.809 6.809 9 Si 0.929 3.071 10 H -0.296 1.296 11 H -0.278 1.278 12 H -0.270 1.270 13 C 0.494 3.506 14 O -0.532 6.532 15 N -0.744 5.744 16 C 0.174 3.826 17 H 0.094 0.906 18 C -0.158 4.158 19 C -0.078 4.078 20 C -0.081 4.081 21 C -0.115 4.115 22 C -0.075 4.075 23 C -0.031 4.031 24 C 0.260 3.740 25 N -0.424 5.424 26 C -0.060 4.060 27 C -0.157 4.157 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.391 0.609 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.421 0.177 -8.102 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.095 4.095 3 C -0.164 4.164 4 C -0.145 4.145 5 C -0.104 4.104 6 C -0.054 4.054 7 C -0.079 4.079 8 O -0.753 6.753 9 Si 0.758 3.242 10 H -0.226 1.226 11 H -0.204 1.204 12 H -0.195 1.195 13 C 0.284 3.716 14 O -0.407 6.407 15 N -0.403 5.403 16 C 0.069 3.931 17 H 0.112 0.888 18 C -0.217 4.217 19 C -0.079 4.079 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.035 4.035 24 C -0.055 4.055 25 N -0.099 5.099 26 C -0.081 4.081 27 C -0.175 4.175 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.362 0.064 -9.361 16.315 hybrid contribution -0.480 0.185 0.399 0.652 sum -13.843 0.250 -8.962 16.492 Atomic orbital electron populations 1.20710 0.92241 1.01868 1.01574 1.19674 0.95042 0.93333 1.01477 1.20733 0.94204 0.96604 1.04848 1.21131 0.94152 0.97796 1.01447 1.21097 1.01082 0.91001 0.97219 1.21439 0.92412 0.98911 0.92667 1.22572 1.02023 0.93748 0.89512 1.95088 1.22287 1.89316 1.68564 0.86621 0.73961 0.81182 0.82474 1.22556 1.20368 1.19488 1.23812 0.84041 0.74777 0.88966 1.90452 1.23115 1.49243 1.77848 1.46837 1.11287 1.72317 1.09857 1.19707 0.96079 0.94437 0.82876 0.88793 1.22191 1.02718 0.94794 1.01974 1.20057 0.95144 0.98233 0.94455 1.21294 0.92036 0.96753 0.99895 1.21059 0.99748 0.98923 0.93551 1.21133 0.94452 0.97787 0.96229 1.15937 0.94747 1.04987 0.87815 1.25727 0.93596 0.93412 0.92806 1.81232 1.07565 1.09378 1.11765 1.21046 0.98730 0.95538 0.92790 1.21089 0.94490 0.97124 1.04804 0.91939 0.92259 0.92057 0.87470 0.87237 0.85478 0.77397 0.91241 0.92462 0.92086 0.85115 0.84772 0.85157 0.84765 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 2 C -0.10 -1.60 5.88 -104.62 -0.62 -2.21 16 3 C -0.15 -2.46 9.70 -39.58 -0.38 -2.84 16 4 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 5 C -0.09 -2.00 9.35 -39.58 -0.37 -2.37 16 6 C -0.05 -1.26 4.39 -104.62 -0.46 -1.72 16 7 C 0.03 0.68 0.70 -29.04 -0.02 0.66 16 8 O -0.81 -27.75 16.19 -55.09 -0.89 -28.64 16 9 Si 0.93 22.12 24.29 -169.99 -4.13 18.00 16 10 H -0.30 -5.65 6.38 56.52 0.36 -5.29 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.49 12.51 5.91 -10.99 -0.06 12.44 16 14 O -0.53 -15.46 16.17 -14.30 -0.23 -15.69 16 15 N -0.74 -14.19 4.56 -54.93 -0.25 -14.44 16 16 C 0.17 2.72 2.77 -69.08 -0.19 2.53 16 17 H 0.09 1.62 7.43 -51.93 -0.39 1.23 16 18 C -0.16 -2.22 9.46 37.16 0.35 -1.87 16 19 C -0.08 -0.96 4.95 -104.68 -0.52 -1.47 16 20 C -0.08 -0.85 9.04 -39.49 -0.36 -1.20 16 21 C -0.11 -0.96 10.03 -39.64 -0.40 -1.36 16 22 C -0.08 -0.64 9.76 -39.16 -0.38 -1.02 16 23 C -0.03 -0.32 5.73 -106.93 -0.61 -0.94 16 24 C 0.26 3.06 15.33 -22.48 -0.34 2.71 16 25 N -0.42 -5.88 18.54 41.83 0.78 -5.10 16 26 C -0.06 -0.67 9.37 -39.17 -0.37 -1.04 16 27 C -0.16 -3.06 7.30 -39.58 -0.29 -3.35 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.13 3.28 7.48 -52.49 -0.39 2.89 16 34 H 0.39 6.64 5.13 -40.82 -0.21 6.43 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.13 1.30 6.92 -52.49 -0.36 0.93 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 1.38 8.03 -52.49 -0.42 0.96 16 42 H 0.12 2.04 5.26 -52.49 -0.28 1.77 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -36.36 361.30 -9.45 -45.80 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.11 Total: 1.44 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -5.06 Total: -6.81 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.52 Total: -19.54 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.12 Total: -44.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.13 Total: 18.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.36 -9.45 -45.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133725602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.103 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds