Wall clock time and date at job start Thu Mar 26 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 120.00027 * 2 1 4 4 C 1.38231 * 120.00130 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00048 * 359.97237 * 4 3 2 6 6 C 1.50698 * 120.00448 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.46756 * 33.28483 * 6 5 4 8 8 Si 1.86297 * 109.47503 * 153.28448 * 6 5 4 9 9 H 1.48506 * 109.46590 * 60.93951 * 8 6 5 10 10 H 1.48497 * 109.47326 * 180.93582 * 8 6 5 11 11 H 1.48504 * 109.47176 * 300.94328 * 8 6 5 12 12 C 1.50696 * 109.47308 * 273.29121 * 6 5 4 13 13 O 1.21283 * 120.00102 * 1.36285 * 12 6 5 14 14 N 1.34773 * 120.00074 * 181.36620 * 12 6 5 15 15 C 1.46505 * 119.99920 * 355.59226 * 14 12 6 16 16 C 1.46502 * 120.00185 * 175.60302 * 14 12 6 17 17 C 1.50698 * 109.47581 * 89.99398 * 16 14 12 18 18 C 1.32825 * 124.72190 * 90.00140 * 17 16 14 19 19 C 1.44401 * 113.07485 * 179.97438 * 18 17 16 20 20 C 1.43196 * 123.45368 * 179.97438 * 19 18 17 21 21 N 9.48020 * 153.77106 * 109.05455 * 4 1 2 22 22 C 1.35949 * 113.09483 * 0.02562 * 19 18 17 23 23 S 1.70451 * 110.83315 * 359.74349 * 22 19 18 24 24 C 1.38246 * 119.99799 * 0.28275 * 5 4 3 25 25 C 1.38231 * 119.99911 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46735 * 90.00006 * 1 2 3 27 27 H 1.08994 * 109.47258 * 209.99489 * 1 2 3 28 28 H 1.09001 * 109.47122 * 329.99894 * 1 2 3 29 29 H 1.08005 * 120.00006 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.00044 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.46776 * 94.15813 * 15 14 12 32 32 H 1.09002 * 109.46797 * 214.15335 * 15 14 12 33 33 H 1.08992 * 109.46889 * 334.15497 * 15 14 12 34 34 H 1.09005 * 109.46891 * 209.99552 * 16 14 12 35 35 H 1.08998 * 109.46932 * 329.99272 * 16 14 12 36 36 H 1.08003 * 123.46215 * 0.02562 * 18 17 16 37 37 H 1.08003 * 124.58549 * 180.02562 * 22 19 18 38 38 H 1.08000 * 119.99464 * 179.72204 * 24 5 4 39 39 H 1.08003 * 120.00099 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 8 6.2544 1.1266 0.7421 8 14 6.3991 -1.5686 0.7937 9 1 5.9235 -2.7385 0.0123 10 1 7.8839 -1.5584 0.8152 11 1 5.8843 -1.6593 2.1837 12 6 6.2822 0.0808 -1.4153 13 8 5.4951 0.1583 -2.3347 14 7 7.6071 0.0670 -1.6618 15 6 8.5594 0.0709 -0.5484 16 6 8.0951 0.0483 -3.0430 17 6 8.2743 1.4625 -3.5317 18 6 9.3937 2.1677 -3.4134 19 6 9.2872 3.4960 -3.9697 20 6 10.3608 4.4436 -3.9615 21 7 11.2120 5.1929 -3.9580 22 6 8.0630 3.7551 -4.5010 23 16 7.0352 2.4046 -4.3425 24 6 3.5805 -1.1972 -0.0037 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 0.0010 31 1 8.8435 -0.9540 -0.3098 32 1 9.4466 0.6374 -0.8313 33 1 8.0966 0.5322 0.3239 34 1 9.0509 -0.4741 -3.0836 35 1 7.3727 -0.4662 -3.6766 36 1 10.2915 1.7865 -2.9495 37 1 7.7812 4.6887 -4.9651 38 1 4.1206 -2.1324 -0.0074 39 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538505684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 20:22:48 Heat of formation + Delta-G solvation = 7.852501 kcal Electronic energy + Delta-G solvation = -25137.351055 eV Core-core repulsion = 21523.632386 eV Total energy + Delta-G solvation = -3613.718669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.087 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.16509 -38.31988 -37.79575 -35.98166 -34.57360 -33.12078 -31.18504 -30.13236 -29.81617 -26.88359 -26.50174 -25.35610 -24.68521 -22.77583 -21.69630 -20.51954 -19.78833 -18.08723 -17.77193 -16.75185 -15.91651 -15.65023 -14.96816 -14.74978 -14.45499 -14.19153 -13.93959 -13.80190 -13.44282 -13.34616 -13.21060 -12.86388 -12.77853 -12.61424 -12.55880 -12.22265 -12.06241 -11.94192 -11.92006 -11.73275 -11.48766 -11.23204 -10.96830 -10.58462 -10.44999 -10.27162 -10.02856 -9.61143 -9.37082 -9.05495 -8.73246 -8.24265 -7.96309 -7.84586 -7.49152 -6.10796 -5.65001 0.83947 1.66561 2.00455 2.09721 2.31305 2.39411 2.77712 3.23511 3.30766 3.37393 3.54217 3.75845 4.02812 4.15560 4.44388 4.82196 4.84148 5.21497 5.36666 5.44331 5.51869 5.55292 5.78454 5.83562 5.91933 5.95864 5.97571 6.03252 6.10443 6.18814 6.26951 6.32724 6.32973 6.48393 6.61162 6.67807 6.95269 7.00291 7.06060 7.38645 7.46773 7.48201 7.54460 7.84331 8.02821 8.38904 9.31174 9.66806 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.004042 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.068383 B = 6925.335569 C = 7837.345897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.120 4.120 3 C -0.132 4.132 4 C -0.070 4.070 5 C -0.038 4.038 6 C 0.021 3.979 7 O -0.815 6.815 8 Si 0.908 3.092 9 H -0.299 1.299 10 H -0.252 1.252 11 H -0.273 1.273 12 C 0.510 3.490 13 O -0.564 6.564 14 N -0.610 5.610 15 C 0.049 3.951 16 C 0.178 3.822 17 C -0.196 4.196 18 C -0.100 4.100 19 C -0.063 4.063 20 C 0.285 3.715 21 N -0.436 5.436 22 C -0.216 4.216 23 S 0.263 5.737 24 C -0.145 4.145 25 C -0.126 4.126 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.111 0.889 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -2.666 -6.945 7.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.150 4.150 4 C -0.088 4.088 5 C -0.039 4.039 6 C -0.081 4.081 7 O -0.761 6.761 8 Si 0.736 3.264 9 H -0.228 1.228 10 H -0.177 1.177 11 H -0.198 1.198 12 C 0.302 3.698 13 O -0.443 6.443 14 N -0.344 5.344 15 C -0.093 4.093 16 C 0.053 3.947 17 C -0.315 4.315 18 C -0.130 4.130 19 C -0.082 4.082 20 C -0.031 4.031 21 N -0.112 5.112 22 C -0.358 4.358 23 S 0.531 5.469 24 C -0.163 4.163 25 C -0.144 4.144 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.166 0.834 37 H 0.188 0.812 38 H 0.129 0.871 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.951 -2.300 -7.274 7.689 hybrid contribution 1.190 0.363 0.251 1.270 sum 0.239 -1.937 -7.023 7.289 Atomic orbital electron populations 1.20651 0.92416 1.01603 1.01256 1.19630 0.94957 0.93541 1.03853 1.20951 0.94618 0.96516 1.02942 1.20914 0.92349 0.99065 0.96469 1.20915 0.98532 0.91976 0.92460 1.22593 0.89200 1.06856 0.89492 1.95011 1.80664 1.34410 1.66045 0.87072 0.80883 0.76863 0.81549 1.22826 1.17685 1.19809 1.23431 0.80234 0.71707 0.94391 1.90473 1.55239 1.50965 1.47619 1.47940 1.07090 1.75153 1.04261 1.22787 0.92828 1.00690 0.92981 1.19803 1.00756 0.88682 0.85495 1.25054 0.96917 1.03150 1.06416 1.20865 0.99414 0.91157 1.01566 1.16177 0.90243 0.92751 1.09063 1.25045 0.92495 0.92628 0.92959 1.81128 1.10298 1.10011 1.09775 1.25689 0.97720 1.06473 1.05869 1.83695 1.12576 1.00302 1.50317 1.21125 0.94245 0.98061 1.02827 1.20708 0.93996 0.96600 1.03121 0.92198 0.92473 0.92391 0.87453 0.85957 0.93568 0.93463 0.85300 0.89263 0.89184 0.83367 0.81236 0.87133 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.01 36.01 0.36 -1.08 16 2 C -0.12 -2.24 5.88 -104.62 -0.62 -2.86 16 3 C -0.13 -2.69 9.70 -39.59 -0.38 -3.08 16 4 C -0.07 -1.70 9.35 -39.59 -0.37 -2.07 16 5 C -0.04 -0.95 3.88 -104.62 -0.41 -1.35 16 6 C 0.02 0.54 0.56 -29.04 -0.02 0.52 16 7 O -0.81 -24.61 14.57 -35.23 -0.51 -25.12 16 8 Si 0.91 20.96 22.29 -169.99 -3.79 17.17 16 9 H -0.30 -6.51 6.47 56.52 0.37 -6.14 16 10 H -0.25 -5.23 4.55 56.52 0.26 -4.97 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.51 12.38 6.19 -10.99 -0.07 12.31 16 13 O -0.56 -14.13 15.66 5.56 0.09 -14.05 16 14 N -0.61 -12.48 2.74 -182.95 -0.50 -12.99 16 15 C 0.05 0.95 8.49 59.85 0.51 1.46 16 16 C 0.18 2.84 5.85 -5.19 -0.03 2.81 16 17 C -0.20 -2.99 6.03 -36.17 -0.22 -3.20 16 18 C -0.10 -1.38 10.20 -39.02 -0.40 -1.78 16 19 C -0.06 -0.86 5.84 -106.37 -0.62 -1.48 16 20 C 0.29 4.16 15.62 -22.54 -0.35 3.81 16 21 N -0.44 -7.03 18.52 41.76 0.77 -6.26 16 22 C -0.22 -2.74 10.78 29.91 0.32 -2.42 16 23 S 0.26 3.81 23.00 -107.50 -2.47 1.34 16 24 C -0.14 -3.26 8.65 -39.58 -0.34 -3.61 16 25 C -0.13 -2.47 9.70 -39.59 -0.38 -2.85 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.12 3.15 7.58 -52.48 -0.40 2.75 16 31 H 0.05 0.82 5.95 -51.93 -0.31 0.51 16 32 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.13 3.03 4.42 -51.93 -0.23 2.80 16 34 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.09 1.45 7.49 -51.93 -0.39 1.06 16 36 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.11 2.39 5.24 -52.49 -0.28 2.11 16 39 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -31.59 345.03 -8.60 -40.19 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.37 Total: -0.61 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.01 Total: -4.87 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.27 Total: -19.25 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.43 Total: -39.17 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -3.79 Total: 17.17 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.47 Total: 1.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.59 -8.60 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538505684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.039 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds